Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07254
Gene name
Locationscaffold_09:1034447..1035269
Strand-
Gene length (bp)822
Transcript length (bp)699
Coding sequence length (bp)699
Protein length (aa) 233

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 5.5E-11 145 209

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

Domain # Start End Length
1 214 231 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07254
MSTSGGAASGSASWAKLRQQGRTLETQTESLFHTFAQFAAAVNVAPEATDEERETESKIEHLLEKRETVISQLAR
LLDSEAALTSSALKQNNLSLLREKLASHRRDLSRLRTTLQQARDRANLLTNVRSDIDQYRARNPEAAEAEYMLDE
RARIDNSHDVADSVLSQAYAVNDGFVLQRETLASINRRITLAASQVPGINNLMNRISAKKRRDGIIMGCFIALCF
VAFWWFT*
Coding >Ophcf2|07254
ATGTCGACGTCTGGTGGTGCGGCTTCGGGGAGTGCGAGCTGGGCGAAGTTGAGGCAGCAGGGGAGGACGCTGGAG
ACGCAGACGGAGAGTCTTTTCCATACGTTTGCGCAGTTCGCGGCTGCGGTGAATGTCGCGCCCGAAGCCACGGAC
GAGGAGCGCGAGACGGAATCCAAGATTGAGCATCTTTTGGAAAAGCGCGAGACGGTAATCTCACAGCTCGCCCGC
CTCCTCGACTCCGAAGCAGCCCTCACATCTTCAGCCCTCAAGCAGAACAACCTCTCCCTCCTGCGCGAAAAACTG
GCCTCCCACCGCCGCGACCTCTCCCGCCTACGCACAACCCTCCAGCAGGCGCGCGACAGAGCCAACCTGCTGACC
AACGTGCGCTCAGACATCGACCAGTACCGCGCGAGGAACCCGGAGGCTGCCGAGGCGGAGTACATGCTTGACGAG
AGGGCGCGGATCGATAATAGTCATGATGTTGCGGATAGCGTGTTGAGTCAGGCTTATGCTGTTAATGATGGGTTT
GTGCTGCAGAGGGAGACGCTGGCTAGTATCAATCGGAGGATTACGCTTGCGGCGAGCCAGGTTCCTGGTATCAAC
AACTTGATGAACAGGATTTCGGCCAAGAAGCGACGGGATGGGATCATCATGGGATGCTTTATTGCCTTGTGCTTT
GTGGCCTTTTGGTGGTTTACTTAG
Transcript >Ophcf2|07254
ATGTCGACGTCTGGTGGTGCGGCTTCGGGGAGTGCGAGCTGGGCGAAGTTGAGGCAGCAGGGGAGGACGCTGGAG
ACGCAGACGGAGAGTCTTTTCCATACGTTTGCGCAGTTCGCGGCTGCGGTGAATGTCGCGCCCGAAGCCACGGAC
GAGGAGCGCGAGACGGAATCCAAGATTGAGCATCTTTTGGAAAAGCGCGAGACGGTAATCTCACAGCTCGCCCGC
CTCCTCGACTCCGAAGCAGCCCTCACATCTTCAGCCCTCAAGCAGAACAACCTCTCCCTCCTGCGCGAAAAACTG
GCCTCCCACCGCCGCGACCTCTCCCGCCTACGCACAACCCTCCAGCAGGCGCGCGACAGAGCCAACCTGCTGACC
AACGTGCGCTCAGACATCGACCAGTACCGCGCGAGGAACCCGGAGGCTGCCGAGGCGGAGTACATGCTTGACGAG
AGGGCGCGGATCGATAATAGTCATGATGTTGCGGATAGCGTGTTGAGTCAGGCTTATGCTGTTAATGATGGGTTT
GTGCTGCAGAGGGAGACGCTGGCTAGTATCAATCGGAGGATTACGCTTGCGGCGAGCCAGGTTCCTGGTATCAAC
AACTTGATGAACAGGATTTCGGCCAAGAAGCGACGGGATGGGATCATCATGGGATGCTTTATTGCCTTGTGCTTT
GTGGCCTTTTGGTGGTTTACTTAG
Gene >Ophcf2|07254
ATGTCGACGTCTGGTGGTGCGGCTTCGGGGAGTGCGAGCTGGGCGAAGTTGAGGCAGCAGGGGAGGACGCTGGAG
ACGCAGGTATGTGAATTGCTTGGGGGGGGGGTGGGAAGGGATTCTGACTGGGGAATAGACGGAGAGTCTTTTCCA
TACGTTTGCGCAGTTCGCGGCTGCGGTGAATGTCGCGCCCGAAGCCACGGACGAGGAGCGCGAGACGGAATCCAA
GATTGAGCATCTTTTGGAAAAGGTAGCCGCGGCTTTTTTTTCCTTCCCCCAGGGGTTAGGTATCATCATGCCCAC
TGACGGACATGACATCAGCGCGAGACGGTAATCTCACAGCTCGCCCGCCTCCTCGACTCCGAAGCAGCCCTCACA
TCTTCAGCCCTCAAGCAGAACAACCTCTCCCTCCTGCGCGAAAAACTGGCCTCCCACCGCCGCGACCTCTCCCGC
CTACGCACAACCCTCCAGCAGGCGCGCGACAGAGCCAACCTGCTGACCAACGTGCGCTCAGACATCGACCAGTAC
CGCGCGAGGAACCCGGAGGCTGCCGAGGCGGAGTACATGCTTGACGAGAGGGCGCGGATCGATAATAGTCATGAT
GTTGCGGATAGCGTGTTGAGTCAGGCTTATGCTGTTAATGATGGGTTTGTGCTGCAGAGGGAGACGCTGGCTAGT
ATCAATCGGAGGATTACGCTTGCGGCGAGCCAGGTTCCTGGTATCAACAACTTGATGAACAGGATTTCGGCCAAG
AAGCGACGGGATGGGATCATCATGGGATGCTTTATTGCCTTGTGCTTTGTGGCCTTTTGGTGGTTTACTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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