© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07247 |
| Gene name | |
| Location | scaffold_09:1021185..1021914 |
| Strand | - |
| Gene length (bp) | 729 |
| Transcript length (bp) | 606 |
| Coding sequence length (bp) | 606 |
| Protein length (aa) | 202 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01105 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD | 1.5E-45 | 20 | 196 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 169 | 191 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 237.71 | 137.47 | 337.95 |
| Alive | In ants, during behavior modification | 253.69 | 143.47 | 363.92 |
| Dead | In ants, recently dead | 240.49 | 138.47 | 342.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.781048 | no |
| Alive | Dead | 0.790427 | no |
| Dead | Fungus | 0.962493 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07247 MRPPSSLLAATLLASAAAAHNIVLPAHGLECFHENLHSEDTMTVTYQIGDREFGSAGNLDIDFWITNPVGGYEIS EKTVSNGDHSFTAKHDGKYTYCFSNQHWGATSKEVSFNVHGIVYVSESDMPSDPIEVEVRHLSELLAQVKDEQQY IIVREHTHRNTAESTNARVKWWNLFVIGVVVGESLFQIWWLRRFFEVKRVV* |
| Coding | >Ophcf2|07247 ATGCGTCCGCCCTCATCCCTCCTGGCAGCAACGCTGCTCGCCTCCGCAGCAGCAGCGCACAACATCGTCCTCCCC GCCCACGGCCTCGAATGCTTCCATGAGAATCTGCACAGCGAGGATACCATGACGGTGACGTACCAGATCGGGGAC CGCGAGTTTGGCAGCGCAGGCAACCTCGATATCGACTTTTGGATAACCAACCCCGTCGGCGGCTACGAAATCAGC GAAAAGACAGTCTCCAACGGCGACCACTCCTTCACCGCAAAGCACGACGGCAAATACACCTACTGCTTCAGCAAC CAACACTGGGGCGCCACCAGCAAAGAAGTCTCCTTCAACGTCCACGGCATCGTCTACGTCAGCGAGTCCGACATG CCCTCGGACCCCATCGAAGTAGAAGTCCGTCATCTCTCCGAACTCCTCGCCCAAGTCAAGGACGAGCAGCAGTAC ATCATTGTTCGCGAACACACCCACCGCAACACCGCCGAGAGCACAAACGCCCGCGTCAAGTGGTGGAACCTCTTC GTCATCGGCGTCGTCGTCGGCGAGTCGCTCTTCCAGATCTGGTGGCTACGTCGCTTCTTCGAGGTCAAGCGCGTC GTTTGA |
| Transcript | >Ophcf2|07247 ATGCGTCCGCCCTCATCCCTCCTGGCAGCAACGCTGCTCGCCTCCGCAGCAGCAGCGCACAACATCGTCCTCCCC GCCCACGGCCTCGAATGCTTCCATGAGAATCTGCACAGCGAGGATACCATGACGGTGACGTACCAGATCGGGGAC CGCGAGTTTGGCAGCGCAGGCAACCTCGATATCGACTTTTGGATAACCAACCCCGTCGGCGGCTACGAAATCAGC GAAAAGACAGTCTCCAACGGCGACCACTCCTTCACCGCAAAGCACGACGGCAAATACACCTACTGCTTCAGCAAC CAACACTGGGGCGCCACCAGCAAAGAAGTCTCCTTCAACGTCCACGGCATCGTCTACGTCAGCGAGTCCGACATG CCCTCGGACCCCATCGAAGTAGAAGTCCGTCATCTCTCCGAACTCCTCGCCCAAGTCAAGGACGAGCAGCAGTAC ATCATTGTTCGCGAACACACCCACCGCAACACCGCCGAGAGCACAAACGCCCGCGTCAAGTGGTGGAACCTCTTC GTCATCGGCGTCGTCGTCGGCGAGTCGCTCTTCCAGATCTGGTGGCTACGTCGCTTCTTCGAGGTCAAGCGCGTC GTTTGA |
| Gene | >Ophcf2|07247 ATGCGTCCGCCCTCATCCCTCCTGGCAGCAACGCTGCTCGCCTCCGCAGCAGCAGCGCACAACATCGTCCTCCCC GCCCACGGCCTCGAATGCTTCCATGAGAATCTGCACAGCGAGGATACCATGACGGTGACGTACCAGATCGGGGAC CGCGAGTTTGGCAGCGCAGGCAACCTCGATATCGACTTTTGGGTACTTCCTTTTACTGCTTGGGGTAAATGAGGA CAGCTGGCTTACGCAGATACATAGATAACCAACCCCGTCGGCGGCTACGAAATCAGCGAAAAGACAGTCTCCAAC GGCGACCACTCCTTCACCGCAAAGCACGACGGCAAATACACCTACTGCTTCAGCAACCAACACTGGGGCGCCACC AGCAAAGAAGTCTCCTTCAACGTCCACGGCATCGTCTACGTCAGCGAGTCCGACATGCCCTCGGACCCCATCGAA GTAGAAGGTATCCATCCCATCTTCTTCTTCTCCTCTGCTCCCGGCCCCGGCTTCTGCTAAGCTACATCAACAGTC CGTCATCTCTCCGAACTCCTCGCCCAAGTCAAGGACGAGCAGCAGTACATCATTGTTCGCGAACACACCCACCGC AACACCGCCGAGAGCACAAACGCCCGCGTCAAGTGGTGGAACCTCTTCGTCATCGGCGTCGTCGTCGGCGAGTCG CTCTTCCAGATCTGGTGGCTACGTCGCTTCTTCGAGGTCAAGCGCGTCGTTTGA |