© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07166 |
| Gene name | |
| Location | scaffold_09:810477..812007 |
| Strand | - |
| Gene length (bp) | 1530 |
| Transcript length (bp) | 1125 |
| Coding sequence length (bp) | 1125 |
| Protein length (aa) | 375 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 7.3E-08 | 165 | 363 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 305 | 327 | 22 |
| 2 | 342 | 364 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 1.86 | 0.21 | 3.50 |
| Alive | In ants, during behavior modification | 15.40 | 6.21 | 24.58 |
| Dead | In ants, recently dead | 27.36 | 13.23 | 41.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.006475 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07166 MAFGSGISCPVARLLKYENGFWTAGQVDLQRSQALPDVCYIFLEDRDWYKHQCTEQGRGRILAPFNIPSFLTSQL CTESNGYFGCQSSFDANEGLIDLSMWFRCLVKRVLNHDEKKAPDGKDYWWDEMGFFTSWHHPNSSKILCVGTPES FHDRLRVELDTAPSFLLKDPFAMLIPIIGQIIELYTDSTWRVRDKVREIEKTRGRQRADFVTMHNISRHAIHLNE VCTVTIETLEKLLEQQKLTHGAIAWLDKTYKQQSQESLSFYLQMMKSLKLRSSSNQERINAEITLAYHIIASQDS AVTKTIAVLTMTFLPASFVASLFSTTFFSSADDKKLAVSTKFWTYWVVAVPSTLLVLFAWWLFLQKSSSRNRWS* |
| Coding | >Ophcf2|07166 ATGGCGTTCGGCAGCGGAATCAGCTGCCCGGTGGCAAGGCTCCTGAAATACGAGAACGGGTTCTGGACGGCCGGG CAAGTCGATCTTCAGCGGAGCCAGGCTCTGCCTGACGTGTGCTACATCTTTCTAGAGGACCGGGATTGGTACAAA CACCAATGCACGGAGCAGGGCCGCGGAAGGATCCTCGCGCCCTTCAACATACCCTCGTTTCTTACTAGCCAGCTT TGCACTGAGAGCAATGGCTATTTTGGCTGCCAAAGCTCGTTTGATGCTAACGAAGGGTTGATAGATCTAAGCATG TGGTTCCGATGCTTGGTCAAGAGGGTTTTGAATCACGATGAAAAAAAAGCTCCGGACGGTAAAGACTATTGGTGG GATGAGATGGGCTTCTTTACAAGCTGGCATCATCCTAACAGCAGCAAGATACTATGCGTCGGCACGCCTGAGAGT TTCCATGACCGATTACGGGTCGAGCTCGACACGGCTCCTTCATTCTTGTTAAAGGACCCTTTCGCAATGCTCATC CCGATCATTGGTCAGATAATTGAGCTCTATACCGACAGCACCTGGAGAGTGCGGGATAAAGTGCGGGAAATCGAA AAGACGAGAGGCAGGCAAAGAGCCGACTTCGTGACGATGCACAACATCTCCAGGCACGCCATTCACCTTAATGAG GTTTGCACAGTAACCATAGAAACCTTGGAGAAGTTGCTTGAGCAGCAGAAGTTGACGCACGGGGCCATCGCCTGG CTCGACAAGACGTACAAGCAGCAGTCACAGGAGTCCCTGAGCTTCTACCTGCAGATGATGAAAAGCCTGAAGCTA CGCTCGTCATCGAACCAAGAAAGAATCAACGCCGAGATCACACTGGCATACCACATCATCGCCAGCCAGGACAGC GCAGTCACCAAGACCATCGCCGTTCTCACCATGACGTTCCTACCGGCCTCATTCGTCGCGTCACTATTCAGCACC ACCTTCTTCTCCTCGGCTGACGACAAGAAGCTAGCCGTTTCGACCAAGTTCTGGACGTACTGGGTGGTTGCAGTG CCATCGACCCTACTCGTTCTCTTTGCTTGGTGGCTGTTTCTGCAAAAATCATCTTCTCGAAACCGATGGAGCTAG |
| Transcript | >Ophcf2|07166 ATGGCGTTCGGCAGCGGAATCAGCTGCCCGGTGGCAAGGCTCCTGAAATACGAGAACGGGTTCTGGACGGCCGGG CAAGTCGATCTTCAGCGGAGCCAGGCTCTGCCTGACGTGTGCTACATCTTTCTAGAGGACCGGGATTGGTACAAA CACCAATGCACGGAGCAGGGCCGCGGAAGGATCCTCGCGCCCTTCAACATACCCTCGTTTCTTACTAGCCAGCTT TGCACTGAGAGCAATGGCTATTTTGGCTGCCAAAGCTCGTTTGATGCTAACGAAGGGTTGATAGATCTAAGCATG TGGTTCCGATGCTTGGTCAAGAGGGTTTTGAATCACGATGAAAAAAAAGCTCCGGACGGTAAAGACTATTGGTGG GATGAGATGGGCTTCTTTACAAGCTGGCATCATCCTAACAGCAGCAAGATACTATGCGTCGGCACGCCTGAGAGT TTCCATGACCGATTACGGGTCGAGCTCGACACGGCTCCTTCATTCTTGTTAAAGGACCCTTTCGCAATGCTCATC CCGATCATTGGTCAGATAATTGAGCTCTATACCGACAGCACCTGGAGAGTGCGGGATAAAGTGCGGGAAATCGAA AAGACGAGAGGCAGGCAAAGAGCCGACTTCGTGACGATGCACAACATCTCCAGGCACGCCATTCACCTTAATGAG GTTTGCACAGTAACCATAGAAACCTTGGAGAAGTTGCTTGAGCAGCAGAAGTTGACGCACGGGGCCATCGCCTGG CTCGACAAGACGTACAAGCAGCAGTCACAGGAGTCCCTGAGCTTCTACCTGCAGATGATGAAAAGCCTGAAGCTA CGCTCGTCATCGAACCAAGAAAGAATCAACGCCGAGATCACACTGGCATACCACATCATCGCCAGCCAGGACAGC GCAGTCACCAAGACCATCGCCGTTCTCACCATGACGTTCCTACCGGCCTCATTCGTCGCGTCACTATTCAGCACC ACCTTCTTCTCCTCGGCTGACGACAAGAAGCTAGCCGTTTCGACCAAGTTCTGGACGTACTGGGTGGTTGCAGTG CCATCGACCCTACTCGTTCTCTTTGCTTGGTGGCTGTTTCTGCAAAAATCATCTTCTCGAAACCGATGGAGCTAG |
| Gene | >Ophcf2|07166 ATGGCGTTCGGCAGCGGAATCAGCTGCCCGGTGGCAAGGCTCCTGAAATACGGTAGACCCATATCGGTTCCTGCC TTGGTTCTAAGCCCCTTACTGACCACTTCTCGCAGAGAACGGGTTCTGGACGGCCGGGCAAGTCGATCTTCAGGT CAGTTCGAGTGGTTCATCGCTGCCCTGATCCTGTTTGTTGACACTGACACACGTCGCAGCGGAGCCAGGCTCTGC CTGACGTGTGCTACATGTCAGGGAAACCTTTATTCTCTACAGGACATCTCATTCTGATGCTATTCCGCAGCTTTC TAGAGGACCGGGATTGGTACAAACACCAATGCACGGAGCAGGGCCGCGGAAGGATCCTCGCGCCCTTCAACATAC CCTCGTTTCTTACTAGCCAGCTTTGCACTGAGAGCAATGGCTATTTTGGCTGCCAAAGCTCGTTTGATGCTAACG AAGGGTTGATAGATCTAAGTATACCTTGCTCTTGTCCAGCGGCTGTGAGCAGCTTTTATTGACACATGTCTTTGA CAGGCATGTGGTTCCGATGCTTGGTCAAGAGGGTTTTGAATCACGATGAAAAAAAAGCTCCGGACGGTAAAGACT ATTGGTGGGATGAGATGGGCTTCTTTACAAGCTGGCATCATCCTAACAGCAGCAAGATACTATGCGTCGGCACGC CTGAGAGTTTCCATGACCGATTACGGGTCGAGCTCGACACGGCTCCTTCATTCTTGTTAAAGGACCCTTTCGCAA TGCTCATCCCGATCATTGGTCAGATAATTGAGCTCTATACCGACAGCACCTGGAGAGTGCGGGATAAAGTGCGGG AAATCGAAAAGGTCTTTAGCTTCCAGTATGGTGCCGAGATGCTTGCGAGCTGACTTTGGTGTCAAAGACGAGAGG CAGGCAAAGAGCCGACTTCGTGACGATGCACAACATCTCCAGGCACGCCATTCACCTTAATGAGGTTTGCACAGT AACCATAGAAACCTTGGAGAAGTTGCTTGAGCAGCAGAAGTTGACGCACGGGGCCATCGCCTGGCTCGACAAGAC GTACAAGCAGCAGTCACAGGAGTCCCTGAGCTTCTACCTGCAGATGATGAAAAGCCTGAAGCTACGCTCGTCATC GAACCAAGAAAGAATCAACGCCGAGATCACACTGGTAACGTGACGACAAGAAGCGAGGCAGGTCCTGGTGACGCG GCTAATCAGCGTCGCAGGCATACCACATCATCGCCAGCCAGGACAGCGCAGTCACCAAGACCATCGCCGTTCTCA CCATGACGTTCCTACCGGCCTCATTCGTCGCGGTAAGACGGCACGGGCCGTGTCCTCTCTTTCATGGCATGTGGT TGACGTCAAGACCAGTCACTATTCAGCACCACCTTCTTCTCCTCGGCTGACGACAAGAAGCTAGCCGTTTCGACC AAGTTCTGGACGTACTGGGTGGTTGCAGTGCCATCGACCCTACTCGTTCTCTTTGCTTGGTGGCTGTTTCTGCAA AAATCATCTTCTCGAAACCGATGGAGCTAG |