Protein ID | Ophcf2|07162 |
Gene name | |
Location | scaffold_09:791648..793568 |
Strand | - |
Gene length (bp) | 1920 |
Transcript length (bp) | 1920 |
Coding sequence length (bp) | 1920 |
Protein length (aa) | 640 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06011 | TRP | Transient receptor potential (TRP) ion channel | 1.3E-133 | 170 | 613 |
PF14558 | TRP_N | ML-like domain | 5.7E-35 | 27 | 162 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.1433 | 0.1356 | 0.3073 | 0.359 | 0.1121 | 0.0131 | 0.4901 | 0.4325 | 0.5104 | 0.02 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 23 | 0.999752 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 341 | 363 | 22 |
2 | 387 | 409 | 22 |
3 | 424 | 446 | 22 |
4 | 483 | 502 | 19 |
5 | 512 | 529 | 17 |
6 | 536 | 558 | 22 |
7 | 573 | 595 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1291 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|07162 MARLDASLWRLLLWTLVFSSTRADDILKTDGFSSCGGDSIKVDKVDISYDRDNKALIFDVAGSSLREQNVTAFLE VTAYGNSVYKNSFNPCDAGTFVQRLCPVPKDSFSAQGSQRIPDQFASMVPEIAFRVPDIAAQATLELKSLDGDEV ACIRSSVTNGKTANTGAARVVAVGVVGVALAVSGVSSASSLVSGAAAGGAGAVVAPSPSFSEAFGWFQGMAVSGM FSVNYPPVYRSFSSNFAFSAFLVPWVGLESSIDDFRRGAGGNLTEDNVDFIRNATMVYPDGSSTSPNRAMAKFKR AVDDFAALVARDEGNQTSNLQHAVQGIQAYAARLSVPKSDIFMTALLVVAIVVAVIVVGILLVKVVLEAWALFGS FPRSLAGFRKHYWGSIARTITSLILILYGIWVLYCIFQFTHGDTVAAKALAAVTLVIFTAVLAFFTWKIWSVARR LKREGGDADGLYNDKQIWVKYSLFYEAYKKSYWWLFVPTIIYMFIKGATLAATDGNGRTQTVAQLVIEALMLVLL LWSRPYERRSGNAVNIAIAVVRVLSVACILVFVEEFGIRQTTQTVAGVVLIVVQSTLTGVLAILIAWNAFNACCK VNPHRKRRKDMGKTSNLPPLRRRRRRRRRRRRHHLHPTR* |
Coding | >Ophcf2|07162 ATGGCTCGTCTGGATGCCTCGCTTTGGAGGCTGCTGCTATGGACCCTCGTCTTCTCCTCGACTCGCGCCGATGAT ATCCTCAAGACGGATGGCTTCAGTTCGTGTGGTGGTGATTCGATAAAGGTCGACAAGGTGGACATCTCGTACGAT CGGGACAACAAGGCTCTGATCTTTGACGTGGCCGGGTCCAGCCTCCGCGAGCAAAACGTCACGGCCTTTCTCGAA GTCACGGCCTATGGAAACTCGGTCTACAAGAACAGCTTCAACCCGTGTGATGCCGGCACATTTGTCCAGCGTCTG TGTCCCGTGCCCAAGGACTCCTTCAGCGCTCAGGGCTCGCAGAGGATACCGGATCAGTTCGCGTCCATGGTTCCG GAAATCGCCTTTCGGGTGCCCGACATTGCCGCCCAGGCGACGCTGGAGCTCAAGAGCTTGGATGGCGACGAGGTG GCCTGCATCCGCTCCTCCGTGACCAACGGCAAGACGGCCAACACCGGAGCCGCCCGTGTCGTCGCCGTCGGAGTC GTCGGCGTCGCCCTCGCCGTCTCCGGCGTCTCGTCCGCCTCGTCTCTCGTCTCGGGCGCTGCCGCCGGCGGTGCA GGGGCCGTCGTCGCCCCGAGTCCCAGCTTCTCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCTGTCAGTGGCATG TTCTCGGTCAACTACCCGCCCGTCTACCGCAGCTTCAGCTCCAACTTTGCCTTCTCTGCCTTTCTCGTTCCGTGG GTCGGTCTCGAGTCGTCCATCGATGACTTTCGGAGGGGCGCCGGTGGGAACTTGACGGAGGATAACGTCGATTTC ATCCGCAATGCCACCATGGTCTACCCGGACGGATCCAGCACCAGCCCCAATCGGGCCATGGCCAAGTTCAAGCGA GCCGTCGATGATTTCGCCGCTCTCGTCGCCCGCGACGAGGGGAACCAGACGTCCAATCTCCAGCACGCCGTCCAG GGCATCCAAGCCTACGCAGCGAGGCTCTCGGTCCCCAAGTCGGACATCTTCATGACGGCCCTTCTCGTCGTGGCC ATCGTCGTCGCCGTCATCGTCGTCGGCATCCTCCTCGTCAAGGTCGTTCTCGAAGCCTGGGCCCTCTTCGGCAGC TTCCCCAGATCCCTCGCCGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGGACCATCACCTCGCTCATCCTC ATCCTCTACGGCATCTGGGTCCTCTACTGCATCTTCCAGTTCACCCACGGCGACACCGTCGCCGCAAAGGCCCTC GCCGCCGTCACCCTCGTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAGATCTGGAGCGTCGCCCGTCGT CTGAAACGCGAGGGCGGCGACGCGGATGGCCTCTACAACGATAAGCAGATCTGGGTCAAGTACTCCCTCTTCTAT GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGACCATCATCTACATGTTCATCAAGGGCGCCACCCTC GCGGCCACCGACGGCAACGGCAGGACCCAGACGGTCGCCCAGCTCGTCATCGAAGCCCTCATGCTCGTCCTCCTG CTCTGGAGCCGACCCTACGAGCGCCGCTCGGGCAACGCCGTCAACATCGCCATCGCCGTCGTCCGCGTCCTGTCC GTGGCCTGCATCCTCGTCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACGCAGACCGTCGCCGGCGTCGTCCTC ATCGTCGTCCAGTCTACGCTGACGGGCGTCTTGGCCATCCTCATCGCTTGGAATGCCTTTAACGCCTGCTGCAAG GTCAACCCGCACCGCAAGCGAAGAAAGGACATGGGTAAGACTTCCAACCTCCCACCCCTTCGTCGTCGTCGTCGT CGTCGTCGTCGTCGTCGTCGACACCACCTCCATCCCACCCGCTAA |
Transcript | >Ophcf2|07162 ATGGCTCGTCTGGATGCCTCGCTTTGGAGGCTGCTGCTATGGACCCTCGTCTTCTCCTCGACTCGCGCCGATGAT ATCCTCAAGACGGATGGCTTCAGTTCGTGTGGTGGTGATTCGATAAAGGTCGACAAGGTGGACATCTCGTACGAT CGGGACAACAAGGCTCTGATCTTTGACGTGGCCGGGTCCAGCCTCCGCGAGCAAAACGTCACGGCCTTTCTCGAA GTCACGGCCTATGGAAACTCGGTCTACAAGAACAGCTTCAACCCGTGTGATGCCGGCACATTTGTCCAGCGTCTG TGTCCCGTGCCCAAGGACTCCTTCAGCGCTCAGGGCTCGCAGAGGATACCGGATCAGTTCGCGTCCATGGTTCCG GAAATCGCCTTTCGGGTGCCCGACATTGCCGCCCAGGCGACGCTGGAGCTCAAGAGCTTGGATGGCGACGAGGTG GCCTGCATCCGCTCCTCCGTGACCAACGGCAAGACGGCCAACACCGGAGCCGCCCGTGTCGTCGCCGTCGGAGTC GTCGGCGTCGCCCTCGCCGTCTCCGGCGTCTCGTCCGCCTCGTCTCTCGTCTCGGGCGCTGCCGCCGGCGGTGCA GGGGCCGTCGTCGCCCCGAGTCCCAGCTTCTCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCTGTCAGTGGCATG TTCTCGGTCAACTACCCGCCCGTCTACCGCAGCTTCAGCTCCAACTTTGCCTTCTCTGCCTTTCTCGTTCCGTGG GTCGGTCTCGAGTCGTCCATCGATGACTTTCGGAGGGGCGCCGGTGGGAACTTGACGGAGGATAACGTCGATTTC ATCCGCAATGCCACCATGGTCTACCCGGACGGATCCAGCACCAGCCCCAATCGGGCCATGGCCAAGTTCAAGCGA GCCGTCGATGATTTCGCCGCTCTCGTCGCCCGCGACGAGGGGAACCAGACGTCCAATCTCCAGCACGCCGTCCAG GGCATCCAAGCCTACGCAGCGAGGCTCTCGGTCCCCAAGTCGGACATCTTCATGACGGCCCTTCTCGTCGTGGCC ATCGTCGTCGCCGTCATCGTCGTCGGCATCCTCCTCGTCAAGGTCGTTCTCGAAGCCTGGGCCCTCTTCGGCAGC TTCCCCAGATCCCTCGCCGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGGACCATCACCTCGCTCATCCTC ATCCTCTACGGCATCTGGGTCCTCTACTGCATCTTCCAGTTCACCCACGGCGACACCGTCGCCGCAAAGGCCCTC GCCGCCGTCACCCTCGTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAGATCTGGAGCGTCGCCCGTCGT CTGAAACGCGAGGGCGGCGACGCGGATGGCCTCTACAACGATAAGCAGATCTGGGTCAAGTACTCCCTCTTCTAT GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGACCATCATCTACATGTTCATCAAGGGCGCCACCCTC GCGGCCACCGACGGCAACGGCAGGACCCAGACGGTCGCCCAGCTCGTCATCGAAGCCCTCATGCTCGTCCTCCTG CTCTGGAGCCGACCCTACGAGCGCCGCTCGGGCAACGCCGTCAACATCGCCATCGCCGTCGTCCGCGTCCTGTCC GTGGCCTGCATCCTCGTCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACGCAGACCGTCGCCGGCGTCGTCCTC ATCGTCGTCCAGTCTACGCTGACGGGCGTCTTGGCCATCCTCATCGCTTGGAATGCCTTTAACGCCTGCTGCAAG GTCAACCCGCACCGCAAGCGAAGAAAGGACATGGGTAAGACTTCCAACCTCCCACCCCTTCGTCGTCGTCGTCGT CGTCGTCGTCGTCGTCGTCGACACCACCTCCATCCCACCCGCTAA |
Gene | >Ophcf2|07162 ATGGCTCGTCTGGATGCCTCGCTTTGGAGGCTGCTGCTATGGACCCTCGTCTTCTCCTCGACTCGCGCCGATGAT ATCCTCAAGACGGATGGCTTCAGTTCGTGTGGTGGTGATTCGATAAAGGTCGACAAGGTGGACATCTCGTACGAT CGGGACAACAAGGCTCTGATCTTTGACGTGGCCGGGTCCAGCCTCCGCGAGCAAAACGTCACGGCCTTTCTCGAA GTCACGGCCTATGGAAACTCGGTCTACAAGAACAGCTTCAACCCGTGTGATGCCGGCACATTTGTCCAGCGTCTG TGTCCCGTGCCCAAGGACTCCTTCAGCGCTCAGGGCTCGCAGAGGATACCGGATCAGTTCGCGTCCATGGTTCCG GAAATCGCCTTTCGGGTGCCCGACATTGCCGCCCAGGCGACGCTGGAGCTCAAGAGCTTGGATGGCGACGAGGTG GCCTGCATCCGCTCCTCCGTGACCAACGGCAAGACGGCCAACACCGGAGCCGCCCGTGTCGTCGCCGTCGGAGTC GTCGGCGTCGCCCTCGCCGTCTCCGGCGTCTCGTCCGCCTCGTCTCTCGTCTCGGGCGCTGCCGCCGGCGGTGCA GGGGCCGTCGTCGCCCCGAGTCCCAGCTTCTCCGAGGCCTTTGGCTGGTTCCAGGGCATGGCTGTCAGTGGCATG TTCTCGGTCAACTACCCGCCCGTCTACCGCAGCTTCAGCTCCAACTTTGCCTTCTCTGCCTTTCTCGTTCCGTGG GTCGGTCTCGAGTCGTCCATCGATGACTTTCGGAGGGGCGCCGGTGGGAACTTGACGGAGGATAACGTCGATTTC ATCCGCAATGCCACCATGGTCTACCCGGACGGATCCAGCACCAGCCCCAATCGGGCCATGGCCAAGTTCAAGCGA GCCGTCGATGATTTCGCCGCTCTCGTCGCCCGCGACGAGGGGAACCAGACGTCCAATCTCCAGCACGCCGTCCAG GGCATCCAAGCCTACGCAGCGAGGCTCTCGGTCCCCAAGTCGGACATCTTCATGACGGCCCTTCTCGTCGTGGCC ATCGTCGTCGCCGTCATCGTCGTCGGCATCCTCCTCGTCAAGGTCGTTCTCGAAGCCTGGGCCCTCTTCGGCAGC TTCCCCAGATCCCTCGCCGGCTTCCGCAAGCACTACTGGGGCTCCATCGCCCGGACCATCACCTCGCTCATCCTC ATCCTCTACGGCATCTGGGTCCTCTACTGCATCTTCCAGTTCACCCACGGCGACACCGTCGCCGCAAAGGCCCTC GCCGCCGTCACCCTCGTCATCTTCACCGCCGTCCTCGCCTTCTTCACCTGGAAGATCTGGAGCGTCGCCCGTCGT CTGAAACGCGAGGGCGGCGACGCGGATGGCCTCTACAACGATAAGCAGATCTGGGTCAAGTACTCCCTCTTCTAT GAGGCCTACAAGAAGAGCTACTGGTGGCTCTTCGTCCCGACCATCATCTACATGTTCATCAAGGGCGCCACCCTC GCGGCCACCGACGGCAACGGCAGGACCCAGACGGTCGCCCAGCTCGTCATCGAAGCCCTCATGCTCGTCCTCCTG CTCTGGAGCCGACCCTACGAGCGCCGCTCGGGCAACGCCGTCAACATCGCCATCGCCGTCGTCCGCGTCCTGTCC GTGGCCTGCATCCTCGTCTTCGTCGAGGAGTTTGGCATCCGTCAGACGACGCAGACCGTCGCCGGCGTCGTCCTC ATCGTCGTCCAGTCTACGCTGACGGGCGTCTTGGCCATCCTCATCGCTTGGAATGCCTTTAACGCCTGCTGCAAG GTCAACCCGCACCGCAAGCGAAGAAAGGACATGGGTAAGACTTCCAACCTCCCACCCCTTCGTCGTCGTCGTCGT CGTCGTCGTCGTCGTCGTCGACACCACCTCCATCCCACCCGCTAA |