© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07155 |
| Gene name | |
| Location | scaffold_09:776331..777351 |
| Strand | - |
| Gene length (bp) | 1020 |
| Transcript length (bp) | 945 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00406 | ADK | Adenylate kinase | 1.2E-41 | 124 | 284 |
| PF13207 | AAA_17 | AAA domain | 5.3E-31 | 125 | 262 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 87 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 85.26 | 47.93 | 122.58 |
| Alive | In ants, during behavior modification | 105.60 | 59.68 | 151.51 |
| Dead | In ants, recently dead | 103.40 | 59.04 | 147.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.292726 | no |
| Alive | Dead | 0.919667 | no |
| Dead | Fungus | 0.340493 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07155 MPHATLRQAVSIARASLRSRPGRLPSLPRRFLSSPPQNSRDDKPENHSSGNNHHHDNGNRPRQTANIKFLPFIAI IAVGSAAYVALVNRRKAIAMPPAADSQQDLPPPSSTPTFSPEKATVVFVLGGPGAGKGTQCARLVDQYAFTHLSA GDLLRAEQDRAGSQFGDLIRSHIKDGLIVPMEVTVQLLENAMTEAMARPGPRPARFLIDGFPRKLDQAYRFEGSV CEPSLVLFYDCPENVLRDRLLERGKTSGRADDNAESILKRFRTFVETSMPVVDHYDKRGAVIKIDATRDKDAVFA DTQKRLKEKLGDDF* |
| Coding | >Ophcf2|07155 ATGCCCCACGCGACCTTGCGCCAAGCCGTTTCCATCGCCCGCGCCTCTCTCCGCTCTCGGCCTGGTCGTCTTCCG TCCCTGCCGAGGCGATTCCTCAGCTCGCCTCCGCAAAACAGCCGCGACGACAAGCCGGAGAATCACAGTAGCGGA AACAACCACCACCACGATAACGGCAACCGTCCCCGTCAAACCGCTAACATCAAGTTCCTCCCCTTTATAGCCATC ATCGCCGTCGGTTCAGCCGCCTACGTCGCTCTCGTCAACCGCCGCAAAGCAATAGCAATGCCTCCAGCCGCAGAC TCCCAGCAAGATCTCCCCCCCCCTTCCTCGACACCGACCTTCTCCCCCGAAAAGGCAACCGTCGTCTTCGTCCTG GGCGGCCCCGGCGCTGGAAAAGGCACCCAATGCGCTCGCCTCGTCGACCAATACGCCTTCACCCACCTCTCAGCC GGCGACCTCCTCCGCGCCGAGCAGGACCGTGCCGGCTCGCAGTTCGGCGACCTGATCCGCTCCCACATTAAAGAC GGGCTCATCGTCCCCATGGAAGTCACCGTCCAGCTGCTGGAGAACGCCATGACGGAGGCCATGGCTCGTCCCGGT CCGCGGCCCGCTCGCTTCCTCATTGACGGCTTCCCCCGCAAGCTCGATCAGGCCTATCGCTTCGAGGGCTCCGTC TGCGAACCCAGTCTCGTCCTCTTTTACGATTGTCCCGAGAATGTCCTTCGCGATCGCCTTCTTGAGCGTGGAAAG ACGAGCGGTAGGGCCGACGATAATGCCGAGAGCATCCTCAAGCGCTTCCGCACTTTTGTCGAGACGAGCATGCCC GTCGTCGACCACTACGACAAGAGGGGCGCCGTCATCAAGATAGACGCCACCCGCGACAAGGACGCCGTCTTTGCC GATACCCAGAAACGCCTCAAGGAGAAGCTCGGCGACGACTTTTGA |
| Transcript | >Ophcf2|07155 ATGCCCCACGCGACCTTGCGCCAAGCCGTTTCCATCGCCCGCGCCTCTCTCCGCTCTCGGCCTGGTCGTCTTCCG TCCCTGCCGAGGCGATTCCTCAGCTCGCCTCCGCAAAACAGCCGCGACGACAAGCCGGAGAATCACAGTAGCGGA AACAACCACCACCACGATAACGGCAACCGTCCCCGTCAAACCGCTAACATCAAGTTCCTCCCCTTTATAGCCATC ATCGCCGTCGGTTCAGCCGCCTACGTCGCTCTCGTCAACCGCCGCAAAGCAATAGCAATGCCTCCAGCCGCAGAC TCCCAGCAAGATCTCCCCCCCCCTTCCTCGACACCGACCTTCTCCCCCGAAAAGGCAACCGTCGTCTTCGTCCTG GGCGGCCCCGGCGCTGGAAAAGGCACCCAATGCGCTCGCCTCGTCGACCAATACGCCTTCACCCACCTCTCAGCC GGCGACCTCCTCCGCGCCGAGCAGGACCGTGCCGGCTCGCAGTTCGGCGACCTGATCCGCTCCCACATTAAAGAC GGGCTCATCGTCCCCATGGAAGTCACCGTCCAGCTGCTGGAGAACGCCATGACGGAGGCCATGGCTCGTCCCGGT CCGCGGCCCGCTCGCTTCCTCATTGACGGCTTCCCCCGCAAGCTCGATCAGGCCTATCGCTTCGAGGGCTCCGTC TGCGAACCCAGTCTCGTCCTCTTTTACGATTGTCCCGAGAATGTCCTTCGCGATCGCCTTCTTGAGCGTGGAAAG ACGAGCGGTAGGGCCGACGATAATGCCGAGAGCATCCTCAAGCGCTTCCGCACTTTTGTCGAGACGAGCATGCCC GTCGTCGACCACTACGACAAGAGGGGCGCCGTCATCAAGATAGACGCCACCCGCGACAAGGACGCCGTCTTTGCC GATACCCAGAAACGCCTCAAGGAGAAGCTCGGCGACGACTTTTGA |
| Gene | >Ophcf2|07155 ATGCCCCACGCGACCTTGCGCCAAGCCGTTTCCATCGCCCGCGCCTCTCTCCGCTCTCGGCCTGGTCGTCTTCCG TCCCTGCCGAGGCGATTCCTCAGCTCGCCTCCGCAAAACAGCCGCGACGACAAGCCGGAGAATCACAGTAGCGGA AACAACCACCACCACGATAACGGCAACCGTCCCCGTCAAACCGCTAACATCAAGTTCCTCCCCTTTATAGCCATC ATCGCCGTCGGTTCAGCCGCCTACGTCGCTCTCGTCAACCGCCGCAAAGGTTTCAATTCATCCTACCACGCGTTT TGTTTTTCTAGAATCCTTGGACAATACCGCTGACCCCTTCCCTTGGTAGCAATAGCAATGCCTCCAGCCGCAGAC TCCCAGCAAGATCTCCCCCCCCCTTCCTCGACACCGACCTTCTCCCCCGAAAAGGCAACCGTCGTCTTCGTCCTG GGCGGCCCCGGCGCTGGAAAAGGCACCCAATGCGCTCGCCTCGTCGACCAATACGCCTTCACCCACCTCTCAGCC GGCGACCTCCTCCGCGCCGAGCAGGACCGTGCCGGCTCGCAGTTCGGCGACCTGATCCGCTCCCACATTAAAGAC GGGCTCATCGTCCCCATGGAAGTCACCGTCCAGCTGCTGGAGAACGCCATGACGGAGGCCATGGCTCGTCCCGGT CCGCGGCCCGCTCGCTTCCTCATTGACGGCTTCCCCCGCAAGCTCGATCAGGCCTATCGCTTCGAGGGCTCCGTC TGCGAACCCAGTCTCGTCCTCTTTTACGATTGTCCCGAGAATGTCCTTCGCGATCGCCTTCTTGAGCGTGGAAAG ACGAGCGGTAGGGCCGACGATAATGCCGAGAGCATCCTCAAGCGCTTCCGCACTTTTGTCGAGACGAGCATGCCC GTCGTCGACCACTACGACAAGAGGGGCGCCGTCATCAAGATAGACGCCACCCGCGACAAGGACGCCGTCTTTGCC GATACCCAGAAACGCCTCAAGGAGAAGCTCGGCGACGACTTTTGA |