Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|07120
Gene name
Location	scaffold_09:661403..661886
Strand	-
Gene length (bp)	483
Transcript length (bp)	429
Coding sequence length (bp)	429
Protein length (aa)	143

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10190	Tmemb_170	Putative transmembrane protein 170	5.0E-26	35	137

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	44	66	22
2	79	101	22
3	116	138	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	48.65	18.98	78.31
Alive	In ants, during behavior modification	28.14	8.60	47.67
Dead	In ants, recently dead	31.95	10.29	53.61

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.048841	yes
Alive	Dead	0.670571	no
Dead	Fungus	0.137395	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|07120 MSYPNDPPPGYETPDWPGLGLPILGDHTPDKRHTLYTVGASWRFTLLWTLVTYAVVHVAVVFIAFCTHGWKRASW KYTWALPIIYLIVAGIEAVFAGSVTGLMVGAIYRAGYHEMNTWVPLVWGFINVLVLIVSSFSFSGGL*
Coding	>Ophcf2\|07120 ATGTCGTACCCGAATGATCCGCCGCCGGGCTACGAGACGCCAGACTGGCCAGGCCTGGGCCTCCCCATCCTTGGC GACCATACGCCAGATAAGCGGCACACGCTCTACACCGTCGGCGCCTCATGGCGCTTCACGCTGCTGTGGACGCTC GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCTTCATCGCCTTCTGCACGCACGGATGGAAGCGGGCGTCGTGG AAATACACCTGGGCGCTACCCATAATATACCTCATCGTCGCCGGCATCGAAGCCGTCTTTGCCGGCAGCGTCACA GGTCTGATGGTGGGGGCTATCTATAGGGCGGGCTATCATGAGATGAACACTTGGGTTCCCCTCGTCTGGGGTTTC ATCAATGTTCTCGTCCTCATCGTCTCTTCCTTTTCCTTTTCAGGAGGGTTATGA
Transcript	>Ophcf2\|07120 ATGTCGTACCCGAATGATCCGCCGCCGGGCTACGAGACGCCAGACTGGCCAGGCCTGGGCCTCCCCATCCTTGGC GACCATACGCCAGATAAGCGGCACACGCTCTACACCGTCGGCGCCTCATGGCGCTTCACGCTGCTGTGGACGCTC GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCTTCATCGCCTTCTGCACGCACGGATGGAAGCGGGCGTCGTGG AAATACACCTGGGCGCTACCCATAATATACCTCATCGTCGCCGGCATCGAAGCCGTCTTTGCCGGCAGCGTCACA GGTCTGATGGTGGGGGCTATCTATAGGGCGGGCTATCATGAGATGAACACTTGGGTTCCCCTCGTCTGGGGTTTC ATCAATGTTCTCGTCCTCATCGTCTCTTCCTTTTCCTTTTCAGGAGGGTTATGA
Gene	>Ophcf2\|07120 ATGTCGTACCCGAATGATCCGCCGCCGGGCTACGAGACGCCAGACTGGCCAGGCCTGGGCCTCCCCATCCTTGGC GACCATACGCCAGATAAGCGGCACACGCTCTACACCGTCGGCGCCTCATGGCGCTTCACGCTGCTGTGGACGCTC GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCTTCATCGCCTTCTGCACGCACGGATGGAAGCGGGCGTCGTGG AAATACACCTGGGCGCTACCCATAATATACCTCATCGTCGCCGGCATCGAAGCCGTCTTTGCCGGCAGCGTCACA GGTCTGATGTAGGTGCATGATTTGGCATCCTAGGTCTGGCCTGGCTGACGATGGCGGCGCAGGGTGGGGGCTATC TATAGGGCGGGCTATCATGAGATGAACACTTGGGTTCCCCTCGTCTGGGGTTTCATCAATGTTCTCGTCCTCATC GTCTCTTCCTTTTCCTTTTCAGGAGGGTTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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