© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07081 |
| Gene name | |
| Location | scaffold_09:549693..550581 |
| Strand | - |
| Gene length (bp) | 888 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09439 | SRPRB | Signal recognition particle receptor beta subunit | 9.4E-26 | 47 | 259 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 6.0E-07 | 50 | 158 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07081 MASTTHIIESLLSPSLPVLFLGLLIVIGAPILLHFIVITSSSAYTSPPAILVLGPQGAGKTALATALERGSLSSS AGPSQTRTSQVTHVVELNASTDSSSRRSFRNHDDASGTHTKFRLVDTPGHAKLRSAAMTSLAAERRLRAVVFLVD AAALAEQDALVPTAAYLYDLLLFLQRRASAAKSGARPIVPVLIAANKTDLFTAIPAAAVRTRLESELTRTRASRS KGLLDSGVGIDDVGESEDVWLGEYGSADFSMEQMREFDIDVDVIGGSVTGHGEGGPDIDGWWWWMAQRVS* |
| Coding | >Ophcf2|07081 ATGGCCTCAACAACACACATCATAGAGTCCCTCCTCTCCCCCTCCCTCCCAGTCCTCTTCCTAGGCCTCCTAATC GTCATCGGAGCCCCCATCCTCCTCCACTTCATCGTCATCACCTCCTCATCAGCCTACACCTCCCCCCCCGCCATC CTCGTCCTCGGCCCCCAAGGCGCAGGAAAGACAGCCCTCGCAACGGCCCTCGAGCGCGGGTCTCTGAGCAGCAGC GCCGGTCCATCGCAGACGCGTACGTCGCAGGTCACCCACGTGGTTGAGCTCAACGCCTCGACGGATTCTTCCTCT CGTCGCTCGTTCCGCAACCATGATGATGCGTCGGGTACGCACACCAAGTTCCGTCTCGTCGACACACCAGGCCAT GCCAAGCTTCGAAGCGCGGCCATGACCAGCCTCGCCGCGGAGCGTAGGTTGAGAGCCGTCGTCTTTCTCGTTGAT GCCGCCGCCCTCGCCGAGCAGGATGCTCTCGTCCCGACTGCAGCCTACCTCTACGACCTGCTGCTTTTCCTACAG AGGCGAGCCTCAGCCGCCAAGTCTGGCGCTCGGCCTATCGTCCCCGTTCTCATCGCCGCCAATAAGACGGATCTT TTCACCGCGATTCCGGCCGCTGCTGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGCACAAGGGCGTCGAGGAGC AAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGATGTCGGCGAGTCTGAGGATGTCTGGCTGGGCGAGTACGGG TCCGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACGTCGACGTCATCGGGGGTAGCGTCACGGGT CACGGTGAGGGAGGGCCGGATATCGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA |
| Transcript | >Ophcf2|07081 ATGGCCTCAACAACACACATCATAGAGTCCCTCCTCTCCCCCTCCCTCCCAGTCCTCTTCCTAGGCCTCCTAATC GTCATCGGAGCCCCCATCCTCCTCCACTTCATCGTCATCACCTCCTCATCAGCCTACACCTCCCCCCCCGCCATC CTCGTCCTCGGCCCCCAAGGCGCAGGAAAGACAGCCCTCGCAACGGCCCTCGAGCGCGGGTCTCTGAGCAGCAGC GCCGGTCCATCGCAGACGCGTACGTCGCAGGTCACCCACGTGGTTGAGCTCAACGCCTCGACGGATTCTTCCTCT CGTCGCTCGTTCCGCAACCATGATGATGCGTCGGGTACGCACACCAAGTTCCGTCTCGTCGACACACCAGGCCAT GCCAAGCTTCGAAGCGCGGCCATGACCAGCCTCGCCGCGGAGCGTAGGTTGAGAGCCGTCGTCTTTCTCGTTGAT GCCGCCGCCCTCGCCGAGCAGGATGCTCTCGTCCCGACTGCAGCCTACCTCTACGACCTGCTGCTTTTCCTACAG AGGCGAGCCTCAGCCGCCAAGTCTGGCGCTCGGCCTATCGTCCCCGTTCTCATCGCCGCCAATAAGACGGATCTT TTCACCGCGATTCCGGCCGCTGCTGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGCACAAGGGCGTCGAGGAGC AAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGATGTCGGCGAGTCTGAGGATGTCTGGCTGGGCGAGTACGGG TCCGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACGTCGACGTCATCGGGGGTAGCGTCACGGGT CACGGTGAGGGAGGGCCGGATATCGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA |
| Gene | >Ophcf2|07081 ATGGCCTCAACAACACACATCATAGAGTCCCTCCTCTCCCCCTCCCTCCCAGTCCTCTTCCTAGGCCTCCTAATC GTCATCGGAGCCCCCATCCTCCTCCACTTCATCGTCATCACCTCCTCATCAGCCTACACCTCCCCCCCCGCCATC CTCGTCCTCGGCCCCCAAGGCGCAGGAAAGACAGCCCTCGCAACGGCCCTCGAGCGCGGGTCTCTGAGCAGCAGC GCCGGTCCATCGCAGACGCGTACGTCGCAGGTCACCCACGTGGTTGAGCTCAACGCCTCGACGGATTCTTCCTCT CGTCGCTCGTTCCGCAACCATGATGATGCGTCGGGTACGCACACCAAGTTCCGTCTCGTCGACACACCAGGCCAT GCCAAGCTTCGAAGCGCGGCCATGACCAGCCTCGCCGCGGAGCGTAGGTTGAGAGCCGTCGTCTTTCTCGTTGAT GCCGCCGCCCTCGCCGAGCAGGATGCTCTCGTCCCGACTGCAGCCTACCTCTACGACCTGCTGCTTTTCCTACAG AGGCGAGCCTCAGCCGCCAAGTCTGGCGCTCGGCCTATCGTCCCCGTTCTCATCGCCGCCAATAAGACGGATCTT TTCACCGCGATTCCGGCCGCTGCTGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGCACAAGGGCGTCGAGGAGC AAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGATGTCGGCGAGTCTGAGGATGTCTGGCTGGGCGAGTACGGG TCCGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACGTCGACGTCATCGGGGGTAGCGTCACGGGT CACGGTGAGGGAGGGCCGGATATCGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA |