© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07013 |
| Gene name | |
| Location | scaffold_09:354034..355249 |
| Strand | - |
| Gene length (bp) | 1215 |
| Transcript length (bp) | 1215 |
| Coding sequence length (bp) | 1215 |
| Protein length (aa) | 405 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.1E-25 | 18 | 357 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 8.9E-09 | 15 | 126 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 47 | 66 | 19 |
| 3 | 71 | 93 | 22 |
| 4 | 106 | 128 | 22 |
| 5 | 148 | 170 | 22 |
| 6 | 203 | 225 | 22 |
| 7 | 240 | 262 | 22 |
| 8 | 271 | 293 | 22 |
| 9 | 303 | 325 | 22 |
| 10 | 338 | 360 | 22 |
| 11 | 375 | 397 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 32.45 | 16.70 | 48.21 |
| Alive | In ants, during behavior modification | 135.41 | 68.21 | 202.60 |
| Dead | In ants, recently dead | 88.61 | 50.19 | 127.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.015153 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07013 MVQQNGHLADSDVGFYSGLIESCFSLSQMMFLIAWSRLADRIGRKPVLIGTLSGMAIGQALFGLSTSLSAMIAFR SLSGILSGSGVIVRTAIGDVSTVETRAAAYSWFGFAGNLGMFLGPLVGGALADPARTMPRYFGQVHLLIRHPYAL SGLAVAVIIGGSALAAAVGLRETLPEKKLRGHHEEPALSVRQLIARRGVAAGLAIYVHVMLLAFVFAAILPLALY TPIHLGGMACSSAATSVYLAVQGASQALWLILVFPWLQGRIGTKRVLRLCGFAGPLFYGGFVLMNALLRLESDVS HRLFWAVGVVVATVGPGVNMAATCAQLIIQEVAPDDRSVGLINALALTLASAIRSFVPAVSTIVFAFGVRSQILF GYLAWAVLIPLSAALIVMPSLLPDETEAN* |
| Coding | >Ophcf2|07013 ATGGTGCAACAAAACGGCCACCTCGCAGACTCGGACGTCGGATTCTACAGCGGCCTGATAGAAAGCTGCTTCTCC CTATCACAAATGATGTTCCTAATCGCCTGGTCCAGACTGGCGGATCGTATAGGCCGCAAGCCCGTCCTCATCGGC ACCCTCTCCGGCATGGCCATCGGACAAGCCCTCTTCGGACTATCCACAAGTCTGTCGGCCATGATAGCCTTCCGC TCTTTATCGGGGATCCTCTCCGGCTCGGGCGTCATCGTCCGGACCGCCATCGGAGATGTCAGCACGGTCGAGACG CGAGCAGCGGCTTACAGCTGGTTCGGCTTCGCCGGGAATCTCGGCATGTTCCTCGGCCCTCTCGTCGGCGGCGCG CTCGCAGATCCGGCCCGGACGATGCCGCGATACTTCGGACAAGTCCATCTGCTGATCCGGCATCCATACGCTTTA TCCGGCCTGGCCGTAGCCGTCATCATCGGAGGTTCCGCCCTCGCCGCCGCCGTCGGTCTCCGCGAGACGCTCCCG GAGAAGAAGCTCAGGGGCCACCACGAGGAGCCAGCCCTATCAGTCCGTCAACTCATCGCCCGTCGAGGCGTAGCA GCAGGATTGGCCATCTACGTGCACGTCATGCTGCTGGCCTTTGTCTTCGCCGCCATCCTCCCGTTGGCCCTGTAC ACGCCCATCCATCTAGGGGGGATGGCCTGCTCTTCAGCGGCCACATCCGTCTACCTGGCCGTCCAGGGAGCCAGC CAGGCGCTGTGGCTGATCCTCGTCTTCCCCTGGCTTCAGGGGCGCATCGGCACCAAGCGTGTCCTCCGTCTCTGT GGCTTCGCTGGCCCTCTGTTCTACGGCGGCTTCGTCCTCATGAACGCCCTGCTTCGACTCGAAAGCGACGTCTCC CACCGTCTCTTCTGGGCCGTCGGCGTTGTCGTAGCGACCGTTGGACCTGGAGTCAACATGGCCGCGACTTGTGCT CAGCTCATCATCCAGGAGGTGGCCCCTGATGACCGTTCTGTTGGGCTCATAAACGCACTGGCTTTGACGCTGGCC AGCGCCATCCGCTCCTTTGTTCCGGCGGTATCGACCATCGTCTTTGCTTTTGGCGTTCGCTCCCAGATCTTATTC GGCTATCTGGCCTGGGCGGTGCTGATTCCGCTATCGGCTGCGCTGATCGTCATGCCATCGTTGCTGCCAGACGAG ACGGAAGCTAATTGA |
| Transcript | >Ophcf2|07013 ATGGTGCAACAAAACGGCCACCTCGCAGACTCGGACGTCGGATTCTACAGCGGCCTGATAGAAAGCTGCTTCTCC CTATCACAAATGATGTTCCTAATCGCCTGGTCCAGACTGGCGGATCGTATAGGCCGCAAGCCCGTCCTCATCGGC ACCCTCTCCGGCATGGCCATCGGACAAGCCCTCTTCGGACTATCCACAAGTCTGTCGGCCATGATAGCCTTCCGC TCTTTATCGGGGATCCTCTCCGGCTCGGGCGTCATCGTCCGGACCGCCATCGGAGATGTCAGCACGGTCGAGACG CGAGCAGCGGCTTACAGCTGGTTCGGCTTCGCCGGGAATCTCGGCATGTTCCTCGGCCCTCTCGTCGGCGGCGCG CTCGCAGATCCGGCCCGGACGATGCCGCGATACTTCGGACAAGTCCATCTGCTGATCCGGCATCCATACGCTTTA TCCGGCCTGGCCGTAGCCGTCATCATCGGAGGTTCCGCCCTCGCCGCCGCCGTCGGTCTCCGCGAGACGCTCCCG GAGAAGAAGCTCAGGGGCCACCACGAGGAGCCAGCCCTATCAGTCCGTCAACTCATCGCCCGTCGAGGCGTAGCA GCAGGATTGGCCATCTACGTGCACGTCATGCTGCTGGCCTTTGTCTTCGCCGCCATCCTCCCGTTGGCCCTGTAC ACGCCCATCCATCTAGGGGGGATGGCCTGCTCTTCAGCGGCCACATCCGTCTACCTGGCCGTCCAGGGAGCCAGC CAGGCGCTGTGGCTGATCCTCGTCTTCCCCTGGCTTCAGGGGCGCATCGGCACCAAGCGTGTCCTCCGTCTCTGT GGCTTCGCTGGCCCTCTGTTCTACGGCGGCTTCGTCCTCATGAACGCCCTGCTTCGACTCGAAAGCGACGTCTCC CACCGTCTCTTCTGGGCCGTCGGCGTTGTCGTAGCGACCGTTGGACCTGGAGTCAACATGGCCGCGACTTGTGCT CAGCTCATCATCCAGGAGGTGGCCCCTGATGACCGTTCTGTTGGGCTCATAAACGCACTGGCTTTGACGCTGGCC AGCGCCATCCGCTCCTTTGTTCCGGCGGTATCGACCATCGTCTTTGCTTTTGGCGTTCGCTCCCAGATCTTATTC GGCTATCTGGCCTGGGCGGTGCTGATTCCGCTATCGGCTGCGCTGATCGTCATGCCATCGTTGCTGCCAGACGAG ACGGAAGCTAATTGA |
| Gene | >Ophcf2|07013 ATGGTGCAACAAAACGGCCACCTCGCAGACTCGGACGTCGGATTCTACAGCGGCCTGATAGAAAGCTGCTTCTCC CTATCACAAATGATGTTCCTAATCGCCTGGTCCAGACTGGCGGATCGTATAGGCCGCAAGCCCGTCCTCATCGGC ACCCTCTCCGGCATGGCCATCGGACAAGCCCTCTTCGGACTATCCACAAGTCTGTCGGCCATGATAGCCTTCCGC TCTTTATCGGGGATCCTCTCCGGCTCGGGCGTCATCGTCCGGACCGCCATCGGAGATGTCAGCACGGTCGAGACG CGAGCAGCGGCTTACAGCTGGTTCGGCTTCGCCGGGAATCTCGGCATGTTCCTCGGCCCTCTCGTCGGCGGCGCG CTCGCAGATCCGGCCCGGACGATGCCGCGATACTTCGGACAAGTCCATCTGCTGATCCGGCATCCATACGCTTTA TCCGGCCTGGCCGTAGCCGTCATCATCGGAGGTTCCGCCCTCGCCGCCGCCGTCGGTCTCCGCGAGACGCTCCCG GAGAAGAAGCTCAGGGGCCACCACGAGGAGCCAGCCCTATCAGTCCGTCAACTCATCGCCCGTCGAGGCGTAGCA GCAGGATTGGCCATCTACGTGCACGTCATGCTGCTGGCCTTTGTCTTCGCCGCCATCCTCCCGTTGGCCCTGTAC ACGCCCATCCATCTAGGGGGGATGGCCTGCTCTTCAGCGGCCACATCCGTCTACCTGGCCGTCCAGGGAGCCAGC CAGGCGCTGTGGCTGATCCTCGTCTTCCCCTGGCTTCAGGGGCGCATCGGCACCAAGCGTGTCCTCCGTCTCTGT GGCTTCGCTGGCCCTCTGTTCTACGGCGGCTTCGTCCTCATGAACGCCCTGCTTCGACTCGAAAGCGACGTCTCC CACCGTCTCTTCTGGGCCGTCGGCGTTGTCGTAGCGACCGTTGGACCTGGAGTCAACATGGCCGCGACTTGTGCT CAGCTCATCATCCAGGAGGTGGCCCCTGATGACCGTTCTGTTGGGCTCATAAACGCACTGGCTTTGACGCTGGCC AGCGCCATCCGCTCCTTTGTTCCGGCGGTATCGACCATCGTCTTTGCTTTTGGCGTTCGCTCCCAGATCTTATTC GGCTATCTGGCCTGGGCGGTGCTGATTCCGCTATCGGCTGCGCTGATCGTCATGCCATCGTTGCTGCCAGACGAG ACGGAAGCTAATTGA |