© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07012 |
| Gene name | |
| Location | scaffold_09:352372..353902 |
| Strand | + |
| Gene length (bp) | 1530 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1530 |
| Protein length (aa) | 510 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01062 | Bestrophin | Bestrophin, RFP-TM, chloride channel | 3.8E-41 | 60 | 388 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005254 | chloride channel activity | Yes |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0005216 | ion channel activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0005253 | anion channel activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.206 | 0.2048 | 0.0738 | 0.2567 | 0.1385 | 0.0087 | 0.4637 | 0.4166 | 0.3724 | 0.0966 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 62 | 84 | 22 |
| 2 | 99 | 118 | 19 |
| 3 | 313 | 335 | 22 |
| 4 | 345 | 367 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 993 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07012 MDDGGRLQSPRSPVSASSPPTSPPTGPGPGPEPSARHHGSGLDLNDYFTGPRDMARHSRWPLLLRLHGSILPKLI LPVVLISIWSATITIVSIKVHPLGVHSVLLTLTGFVVSLSLSFRCSTAYERYSEGRKYWTGLVQASHVLGRVFWI HAKDGPDMDPREGLLLRLTSMNLVVAFALSLKHGLRFEPYLYPDMATLVDHLNTWASAATTMTTTTTTTTTTDDP SGSRLRRRRFFHSVGEYLGLSFTASNPRKALKRATQPLGHLPLEILGHLAIAIDALVADQQLTVPAHQTLAYNAL QSLNDVMTGTERVLCTPLPIAYSIAISQATYLYLALLPFQLIPLLHWIAIPATIAASCIILSLLFIGQEIEDPFG HDVNDLPLDSYCDQIAADLDIIASIDTREPRAFLTSRRNRPLHPVSTAPYDIWLQRDEQRLREAVRQKPAARFEG ARWGKNNGSKVSAGSGSLASNNNNNNNNNNNNNNSGSSSGSSRISSSSSSRISSSEKQG* |
| Coding | >Ophcf2|07012 ATGGACGACGGCGGCCGGCTCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCTTCTCCGCCGACGTCTCCGCCGACC GGCCCCGGCCCCGGCCCCGAACCGTCTGCCCGTCATCATGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGT CCGCGCGATATGGCGCGTCACAGCCGCTGGCCGCTCTTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATC TTGCCAGTCGTTCTCATCAGCATCTGGAGCGCCACCATCACCATCGTGTCCATAAAGGTGCACCCGCTAGGCGTA CACTCGGTGCTGCTGACGCTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTTCGATGCTCGACTGCTTACGAG CGCTACTCGGAGGGTCGCAAGTACTGGACAGGTCTCGTCCAGGCCTCGCACGTTCTTGGTCGAGTCTTCTGGATT CATGCCAAGGACGGACCGGATATGGATCCTCGCGAGGGCTTGTTGCTGCGGCTGACGTCGATGAACCTGGTCGTT GCCTTTGCTCTCTCGCTCAAACATGGCCTGCGCTTCGAGCCCTACCTCTATCCAGACATGGCCACCCTTGTCGAC CATCTCAATACGTGGGCGTCTGCGGCGACGACGATGACGACGACGACGACGACGACGACGACAACTGATGATCCG TCTGGTTCCCGTCTTCGTCGCCGTCGCTTCTTCCATAGCGTGGGCGAGTATCTCGGCCTCTCCTTTACAGCCAGC AACCCGCGAAAGGCGCTCAAACGAGCCACCCAGCCGCTGGGCCACCTCCCGCTCGAGATTCTCGGTCATCTGGCC ATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTGACGGTGCCGGCGCACCAGACGTTGGCCTACAACGCCTTA CAGTCGCTCAACGACGTCATGACGGGCACCGAACGGGTTCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCC ATCTCCCAGGCCACTTACCTGTATCTGGCCCTGCTGCCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATC CCCGCCACCATTGCCGCCTCGTGCATCATCCTCAGCCTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGC CACGACGTCAACGACCTGCCTCTCGACAGCTACTGCGACCAGATCGCCGCCGACCTCGATATCATCGCCTCTATT GACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGCCGCAACCGACCGCTGCACCCAGTCAGCACGGCGCCTTAT GATATCTGGCTTCAGCGAGACGAGCAGAGGCTTCGAGAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAAGGC GCGAGATGGGGAAAGAATAACGGAAGCAAGGTCAGCGCGGGCTCTGGTAGCCTTGCGAGCAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAGCGGCAGCAGCAGCGGCAGCAGCAGAATCAGCAGCAGCAGCAGCAGC AGAATCAGCAGCAGCGAGAAGCAGGGCTGA |
| Transcript | >Ophcf2|07012 ATGGACGACGGCGGCCGGCTCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCTTCTCCGCCGACGTCTCCGCCGACC GGCCCCGGCCCCGGCCCCGAACCGTCTGCCCGTCATCATGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGT CCGCGCGATATGGCGCGTCACAGCCGCTGGCCGCTCTTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATC TTGCCAGTCGTTCTCATCAGCATCTGGAGCGCCACCATCACCATCGTGTCCATAAAGGTGCACCCGCTAGGCGTA CACTCGGTGCTGCTGACGCTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTTCGATGCTCGACTGCTTACGAG CGCTACTCGGAGGGTCGCAAGTACTGGACAGGTCTCGTCCAGGCCTCGCACGTTCTTGGTCGAGTCTTCTGGATT CATGCCAAGGACGGACCGGATATGGATCCTCGCGAGGGCTTGTTGCTGCGGCTGACGTCGATGAACCTGGTCGTT GCCTTTGCTCTCTCGCTCAAACATGGCCTGCGCTTCGAGCCCTACCTCTATCCAGACATGGCCACCCTTGTCGAC CATCTCAATACGTGGGCGTCTGCGGCGACGACGATGACGACGACGACGACGACGACGACGACAACTGATGATCCG TCTGGTTCCCGTCTTCGTCGCCGTCGCTTCTTCCATAGCGTGGGCGAGTATCTCGGCCTCTCCTTTACAGCCAGC AACCCGCGAAAGGCGCTCAAACGAGCCACCCAGCCGCTGGGCCACCTCCCGCTCGAGATTCTCGGTCATCTGGCC ATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTGACGGTGCCGGCGCACCAGACGTTGGCCTACAACGCCTTA CAGTCGCTCAACGACGTCATGACGGGCACCGAACGGGTTCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCC ATCTCCCAGGCCACTTACCTGTATCTGGCCCTGCTGCCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATC CCCGCCACCATTGCCGCCTCGTGCATCATCCTCAGCCTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGC CACGACGTCAACGACCTGCCTCTCGACAGCTACTGCGACCAGATCGCCGCCGACCTCGATATCATCGCCTCTATT GACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGCCGCAACCGACCGCTGCACCCAGTCAGCACGGCGCCTTAT GATATCTGGCTTCAGCGAGACGAGCAGAGGCTTCGAGAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAAGGC GCGAGATGGGGAAAGAATAACGGAAGCAAGGTCAGCGCGGGCTCTGGTAGCCTTGCGAGCAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAGCGGCAGCAGCAGCGGCAGCAGCAGAATCAGCAGCAGCAGCAGCAGC AGAATCAGCAGCAGCGAGAAGCAGGGCTGA |
| Gene | >Ophcf2|07012 ATGGACGACGGCGGCCGGCTCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCTTCTCCGCCGACGTCTCCGCCGACC GGCCCCGGCCCCGGCCCCGAACCGTCTGCCCGTCATCATGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGT CCGCGCGATATGGCGCGTCACAGCCGCTGGCCGCTCTTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATC TTGCCAGTCGTTCTCATCAGCATCTGGAGCGCCACCATCACCATCGTGTCCATAAAGGTGCACCCGCTAGGCGTA CACTCGGTGCTGCTGACGCTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTTCGATGCTCGACTGCTTACGAG CGCTACTCGGAGGGTCGCAAGTACTGGACAGGTCTCGTCCAGGCCTCGCACGTTCTTGGTCGAGTCTTCTGGATT CATGCCAAGGACGGACCGGATATGGATCCTCGCGAGGGCTTGTTGCTGCGGCTGACGTCGATGAACCTGGTCGTT GCCTTTGCTCTCTCGCTCAAACATGGCCTGCGCTTCGAGCCCTACCTCTATCCAGACATGGCCACCCTTGTCGAC CATCTCAATACGTGGGCGTCTGCGGCGACGACGATGACGACGACGACGACGACGACGACGACAACTGATGATCCG TCTGGTTCCCGTCTTCGTCGCCGTCGCTTCTTCCATAGCGTGGGCGAGTATCTCGGCCTCTCCTTTACAGCCAGC AACCCGCGAAAGGCGCTCAAACGAGCCACCCAGCCGCTGGGCCACCTCCCGCTCGAGATTCTCGGTCATCTGGCC ATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTGACGGTGCCGGCGCACCAGACGTTGGCCTACAACGCCTTA CAGTCGCTCAACGACGTCATGACGGGCACCGAACGGGTTCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCC ATCTCCCAGGCCACTTACCTGTATCTGGCCCTGCTGCCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATC CCCGCCACCATTGCCGCCTCGTGCATCATCCTCAGCCTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGC CACGACGTCAACGACCTGCCTCTCGACAGCTACTGCGACCAGATCGCCGCCGACCTCGATATCATCGCCTCTATT GACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGCCGCAACCGACCGCTGCACCCAGTCAGCACGGCGCCTTAT GATATCTGGCTTCAGCGAGACGAGCAGAGGCTTCGAGAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAAGGC GCGAGATGGGGAAAGAATAACGGAAGCAAGGTCAGCGCGGGCTCTGGTAGCCTTGCGAGCAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAGCGGCAGCAGCAGCGGCAGCAGCAGAATCAGCAGCAGCAGCAGCAGC AGAATCAGCAGCAGCGAGAAGCAGGGCTGA |