© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07000 |
| Gene name | |
| Location | scaffold_09:321345..322673 |
| Strand | + |
| Gene length (bp) | 1328 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03824 | NicO | High-affinity nickel-transport protein | 1.0E-64 | 51 | 354 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005887 | integral component of plasma membrane | Yes |
| GO:0015099 | nickel cation transmembrane transporter activity | Yes |
| GO:0035444 | nickel cation transmembrane transport | Yes |
| GO:0098655 | cation transmembrane transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031226 | intrinsic component of plasma membrane | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0016021 | integral component of membrane | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0000041 | transition metal ion transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0015675 | nickel cation transport | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0030001 | metal ion transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006811 | ion transport | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 89 | 111 | 22 |
| 3 | 126 | 148 | 22 |
| 4 | 214 | 236 | 22 |
| 5 | 246 | 265 | 19 |
| 6 | 286 | 308 | 22 |
| 7 | 335 | 357 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07000 MERLSRAADGLGLSALPGRSIVVIAAVAVVNAIVWAAVGIVLRFHPALAPTALLCYTLGLRHGLDADHISAIDLV TRRLVADGRRPVTVGTFFSLGHATVVFITCVAVAATSGALRERFDGFARVGGVIGTAVSAAVLLLLCLGNGWVLW RLVARLRAVLARRRRALHRAITGEEDDEDDEDEAERARAPRGFGPVAYFAGYLFRAIDRPWKMFPLGLVFGLGFD TSSEVALLGIASVHAAEGTSIWLILVFPLLFTAGMCLVDSADGALMMGLYTSKTFSRDDVAILYYSIVLTSLTIA VSFFIGVIQALSLTQNVAHPQGPFWDGLTAVTDHFDAIGGGICALFVLVGLASVVAYRPWRRHIDRRRVGLVAAA AEESMPETDGRPSPSHEVVPRDLGGRQA* |
| Coding | >Ophcf2|07000 ATGGAGCGCCTCAGCCGAGCGGCAGACGGCCTCGGACTCTCCGCCCTCCCGGGCCGCAGCATCGTCGTCATCGCG GCCGTCGCCGTCGTCAACGCCATCGTCTGGGCCGCCGTCGGCATCGTCCTGCGCTTCCACCCTGCCTTGGCGCCC ACGGCCCTGCTGTGCTACACTCTGGGACTACGCCACGGCCTCGACGCAGATCACATCTCCGCCATTGACCTGGTG ACGCGTCGCCTCGTCGCCGACGGTCGTCGCCCTGTCACCGTCGGCACCTTTTTCTCGCTGGGCCATGCAACCGTC GTCTTCATCACGTGCGTCGCCGTCGCGGCCACGAGCGGGGCGTTGCGCGAACGCTTCGACGGCTTCGCCCGCGTT GGTGGCGTCATTGGCACTGCTGTCAGTGCGGCCGTGTTACTGCTGCTGTGTCTGGGCAACGGTTGGGTCTTGTGG CGGCTTGTTGCTCGGCTGCGTGCCGTGCTGGCTCGACGGAGGCGGGCGCTTCATCGGGCTATCACCGGCGAGGAG GACGATGAAGACGACGAGGATGAGGCAGAGCGAGCGAGGGCGCCGCGTGGCTTCGGGCCCGTTGCGTATTTCGCC GGCTACCTTTTCAGGGCAATCGATAGGCCGTGGAAGATGTTTCCGCTCGGTCTAGTCTTCGGCCTCGGCTTCGAC ACTTCGTCCGAGGTCGCACTGCTCGGCATAGCCAGCGTTCACGCCGCTGAGGGGACCAGCATCTGGCTCATCCTC GTCTTTCCCCTCCTCTTCACCGCGGGCATGTGCCTCGTCGACAGCGCCGATGGTGCCCTGATGATGGGCTTATAC ACGTCCAAAACCTTTTCGCGAGATGACGTCGCCATCCTCTACTACTCCATCGTCCTCACCTCCCTGACCATCGCC GTCTCCTTCTTCATCGGCGTCATCCAGGCCCTATCCCTGACGCAAAACGTAGCTCACCCGCAGGGACCCTTCTGG GATGGCCTGACAGCCGTGACGGACCACTTCGACGCCATCGGCGGTGGCATCTGCGCCCTCTTCGTCCTCGTCGGG CTCGCCTCCGTCGTCGCCTACCGCCCGTGGAGGAGGCACATTGATAGGAGGCGCGTAGGGCTCGTCGCCGCCGCT GCCGAGGAGAGCATGCCCGAGACGGACGGACGGCCGTCTCCGTCACACGAAGTGGTCCCCCGGGATTTGGGGGGG AGGCAAGCTTAG |
| Transcript | >Ophcf2|07000 ATGGAGCGCCTCAGCCGAGCGGCAGACGGCCTCGGACTCTCCGCCCTCCCGGGCCGCAGCATCGTCGTCATCGCG GCCGTCGCCGTCGTCAACGCCATCGTCTGGGCCGCCGTCGGCATCGTCCTGCGCTTCCACCCTGCCTTGGCGCCC ACGGCCCTGCTGTGCTACACTCTGGGACTACGCCACGGCCTCGACGCAGATCACATCTCCGCCATTGACCTGGTG ACGCGTCGCCTCGTCGCCGACGGTCGTCGCCCTGTCACCGTCGGCACCTTTTTCTCGCTGGGCCATGCAACCGTC GTCTTCATCACGTGCGTCGCCGTCGCGGCCACGAGCGGGGCGTTGCGCGAACGCTTCGACGGCTTCGCCCGCGTT GGTGGCGTCATTGGCACTGCTGTCAGTGCGGCCGTGTTACTGCTGCTGTGTCTGGGCAACGGTTGGGTCTTGTGG CGGCTTGTTGCTCGGCTGCGTGCCGTGCTGGCTCGACGGAGGCGGGCGCTTCATCGGGCTATCACCGGCGAGGAG GACGATGAAGACGACGAGGATGAGGCAGAGCGAGCGAGGGCGCCGCGTGGCTTCGGGCCCGTTGCGTATTTCGCC GGCTACCTTTTCAGGGCAATCGATAGGCCGTGGAAGATGTTTCCGCTCGGTCTAGTCTTCGGCCTCGGCTTCGAC ACTTCGTCCGAGGTCGCACTGCTCGGCATAGCCAGCGTTCACGCCGCTGAGGGGACCAGCATCTGGCTCATCCTC GTCTTTCCCCTCCTCTTCACCGCGGGCATGTGCCTCGTCGACAGCGCCGATGGTGCCCTGATGATGGGCTTATAC ACGTCCAAAACCTTTTCGCGAGATGACGTCGCCATCCTCTACTACTCCATCGTCCTCACCTCCCTGACCATCGCC GTCTCCTTCTTCATCGGCGTCATCCAGGCCCTATCCCTGACGCAAAACGTAGCTCACCCGCAGGGACCCTTCTGG GATGGCCTGACAGCCGTGACGGACCACTTCGACGCCATCGGCGGTGGCATCTGCGCCCTCTTCGTCCTCGTCGGG CTCGCCTCCGTCGTCGCCTACCGCCCGTGGAGGAGGCACATTGATAGGAGGCGCGTAGGGCTCGTCGCCGCCGCT GCCGAGGAGAGCATGCCCGAGACGGACGGACGGCCGTCTCCGTCACACGAAGTGGTCCCCCGGGATTTGGGGGGG AGGCAAGCTTAG |
| Gene | >Ophcf2|07000 ATGGAGCGCCTCAGCCGAGCGGCAGACGGCCTCGGACTCTCCGCCCTCCCGGGCCGCAGCATCGTCGTCATCGCG GCCGTCGCCGTCGTCAACGCCATCGTCTGGGCCGCCGTCGGCATCGTCCTGCGCTTCCACCCTGCCTTGGCGCCC ACGGCCCTGCTGTGCTACACTCTGGGACTACGCCACGGCCTCGACGCAGATCACATCTCCGCCATTGACCTGGTG ACGCGTCGCCTCGTCGCCGACGGTCGTCGCCCTGTCACCGTCGGCACCTTTTTCTCGCTGGGCCATGCAACCGTC GTCTTCATCACGTGCGTCGCCGTCGCGGCCACGAGCGGGGCGTTGCGCGAACGCTTCGACGGCTTCGCCCGCGTT GGTGGCGTCATTGGCACTGCTGTCAGTGCGGCCGTGTTACTGCTGCTGTGTCTGGGCAACGGTTGGGTCTTGTGG CGGCTTGTTGCTCGGCTGCGTGCCGTGCTGGCTCGACGGAGGCGGGCGCTTCATCGGGCTATCACCGGCGAGGAG GACGATGAAGACGACGAGGATGAGGCAGAGCGAGCGAGGGCGCCGCGTGGCTTCGGGCCCGTTGCGTATTTCGCC GGCTACCTTTTCAGGGCAATCGATAGGCCGTGGAAGATGTTTCCGCTCGGTCTAGTCTTCGGCCTCGGCTTCGAC ACTTCGTCCGAGGTCGCACTGCTCGGCATAGCCAGCGTTCACGCCGCTGAGGGGACCAGCATCTGGCTCATCCTC GTCTTTCCCCTCCTCTTCACCGGTGAGTCCAACGGGAACCCCCCGCGGGGCGAGAAACGACTCATCAAGCCTTGC AGCGGGCATGTGCCTCGTCGACAGCGCCGATGGTGCCCTGATGATGGGTAATACAGCGTCCCCCACCCTTACCCG CATGGCAAGCCTCATCTTAACCATTGCTCCTAGGCTTATACACGTCCAAAACCTTTTCGCGAGATGACGTCGCCA TCCTCTACTACTCCATCGTCCTCACCTCCCTGACCATCGCCGTCTCCTTCTTCATCGGCGTCATCCAGGCCCTAT CCCTGACGCAAAACGTAGCTCACCCGCAGGGACCCTTCTGGGATGGCCTGACAGCCGTGACGGACCACTTCGACG CCATCGGCGGTGGCATCTGCGCCCTCTTCGTCCTCGTCGGGCTCGCCTCCGTCGTCGCCTACCGCCCGTGGAGGA GGCACATTGATAGGAGGCGCGTAGGGCTCGTCGCCGCCGCTGCCGAGGAGAGCATGCCCGAGACGGACGGACGGC CGTCTCCGTCACACGAAGTGGTCCCCCGGGATTTGGGGGGGAGGCAAGCTTAG |