Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|06987
Gene name
Location	scaffold_09:292513..294507
Strand	-
Gene length (bp)	1994
Transcript length (bp)	795
Coding sequence length (bp)	795
Protein length (aa)	265

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	73	95	22
2	100	120	20
3	135	157	22
4	164	186	22
5	216	238	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	14.64	5.15	24.13
Alive	In ants, during behavior modification	12.40	4.07	20.74
Dead	In ants, recently dead	11.65	3.78	19.52

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.614600	no
Alive	Dead	0.845093	no
Dead	Fungus	0.469127	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|06987 MTILAPSLLALLLDQRVVRSSAILGFNYSHSAVSLCRKLLLQICRPSLLQDHRSTRFVASESSGPRASRLYQPSF LFSMGVFTPPPIIALAYVGVRLFQIFLLLTPIVGLLAFFTDTTLSRFGFIDIRLLPEGVAIIFITSIVALGWCIL TIIALFVANLDGKFIAIIDLGIMGALIGGVVRLRFIQFSCLVRRFFRTALTDLAFRLCVSVKASWILAIIAVIMF FISAVLALAASLLRQPFRFGGKRRRRAVDSGGVHVHVDT*
Coding	>Ophcf2\|06987 ATGACGATTCTCGCTCCCTCCTTACTCGCGTTGCTGCTGGATCAGCGCGTAGTCCGAAGTTCTGCGATTCTCGGC TTCAATTACTCGCACTCGGCCGTATCACTCTGCCGGAAACTATTGCTTCAGATTTGCCGTCCTTCTCTGCTTCAG GACCATCGTTCAACCCGCTTCGTTGCGTCGGAATCAAGCGGTCCTCGGGCTTCGCGCCTCTATCAACCCTCCTTT TTGTTCTCCATGGGTGTCTTTACTCCCCCCCCCATCATTGCCCTGGCGTACGTCGGCGTACGCTTGTTTCAAATA TTTCTCCTCCTGACGCCCATCGTCGGCCTTCTCGCCTTCTTCACCGACACCACCTTGTCTCGATTCGGCTTCATC GACATCAGGCTACTGCCAGAAGGAGTGGCCATCATCTTCATCACCTCCATCGTCGCCCTCGGATGGTGCATCCTC ACCATCATCGCCCTATTCGTCGCCAATCTCGACGGCAAGTTTATAGCCATCATCGACTTGGGCATCATGGGCGCC CTCATCGGAGGCGTCGTCCGTCTGCGCTTCATCCAGTTCTCCTGTCTCGTTCGTCGATTCTTCCGCACGGCGTTG ACGGACTTGGCCTTTCGACTGTGCGTCTCCGTCAAAGCCAGCTGGATTCTCGCCATTATCGCCGTCATCATGTTC TTCATATCGGCCGTGTTGGCTCTCGCTGCTTCTCTGCTTAGACAGCCCTTTCGCTTTGGCGGTAAGAGGAGGAGG AGAGCGGTGGACAGTGGGGGGGTGCACGTTCACGTTGATACTTGA
Transcript	>Ophcf2\|06987 ATGACGATTCTCGCTCCCTCCTTACTCGCGTTGCTGCTGGATCAGCGCGTAGTCCGAAGTTCTGCGATTCTCGGC TTCAATTACTCGCACTCGGCCGTATCACTCTGCCGGAAACTATTGCTTCAGATTTGCCGTCCTTCTCTGCTTCAG GACCATCGTTCAACCCGCTTCGTTGCGTCGGAATCAAGCGGTCCTCGGGCTTCGCGCCTCTATCAACCCTCCTTT TTGTTCTCCATGGGTGTCTTTACTCCCCCCCCCATCATTGCCCTGGCGTACGTCGGCGTACGCTTGTTTCAAATA TTTCTCCTCCTGACGCCCATCGTCGGCCTTCTCGCCTTCTTCACCGACACCACCTTGTCTCGATTCGGCTTCATC GACATCAGGCTACTGCCAGAAGGAGTGGCCATCATCTTCATCACCTCCATCGTCGCCCTCGGATGGTGCATCCTC ACCATCATCGCCCTATTCGTCGCCAATCTCGACGGCAAGTTTATAGCCATCATCGACTTGGGCATCATGGGCGCC CTCATCGGAGGCGTCGTCCGTCTGCGCTTCATCCAGTTCTCCTGTCTCGTTCGTCGATTCTTCCGCACGGCGTTG ACGGACTTGGCCTTTCGACTGTGCGTCTCCGTCAAAGCCAGCTGGATTCTCGCCATTATCGCCGTCATCATGTTC TTCATATCGGCCGTGTTGGCTCTCGCTGCTTCTCTGCTTAGACAGCCCTTTCGCTTTGGCGGTAAGAGGAGGAGG AGAGCGGTGGACAGTGGGGGGGTGCACGTTCACGTTGATACTTGA
Gene	>Ophcf2\|06987 ATGACGATTCTCGCTCCCTCCTTACTCGCGTTGCTGCTGGATCAGCGCGTAGTCCGAAGTGTATGACTTGTCTTT GGGCTTTTACGCCCTGCTTCCTCATATAGAAAGATGCTCTTATTTGATAGCCTAGTCTGCGATTCTCGGCTTCAA TTACTCGCACTCGGCCGTATCACTCTGCCGGAAACTATTGCTTCGTACGAGATGCATGACTAGCCATTGCCCGCC ACTTCACATTTGATCGAAAGAACTCTACCAGTTCAGCAGCAACCTCCAAAGATATCGACAACTCCCAACACTAAA TCCCCGTCCTTTTACAACTCACGGTTCCTCAACACACAAACTCTCTCCCGCTCCCTCAAAAAAGACTCCTTCATC ATCCCTCGTCGCGGCAACGTCCGAGCACAACCTCGCCGAAACCCGCTGCTTCACCCTCCGCGTTTCACCTGCCAT CACCCGTCTCCCGAAGCACCTGCTAGCGTCGACCACCACTGTCCGGGGCTAGTTCCGAGATGAAGATCACGTCAC CTCGCTGAAAGCCGATAGCAAAGGATGAGACGGAAAGAGAAAGCTGGTCGTCATCTTGTTCTGCTGTCAAGGGGT AGGCCATTCTGCATTGTCTGCTCGAAACTACGTGTCAGACCCTTTCCTCTCTCCCCGTCATAGGTCGTCTTGACA TCCGACGCTTCGTTCCTCTGTCGAGACGCCAGCCATGCGCCACGAGCCTTGTCTGCCGGACGTTTACCTCGGTCG TCTCCGGATCGTCTCCTCAAACCATGTCTGTACGGCGTCTGCCCGTGACTCAATGCGACGCCCATCAGATTTTCC CGGCTGGCTGGCTCATGGGCGGTAGGCAATAAGCTTATTCGAACGATCCGAGCCTTAGCTTGGTCGGATGGGGGT AGCGGATTTGGGATGACACTCGAGACCACGAGTAAGGAAACTCGAGTAAGGCCAGCTCCCTAAACAGCGTCATTT TTCATCTTGATCTTCTGTTACCACTCGTGACGGTCTGATTCAAGGGCTTGGCTCCCCTGTTCGTGTCCGTCCCGA CTAGTCTCAGCGTGAACTTACTCGCTCGTTGCTCATATAGATGGTATCCGTCTGGGGGGTTTGTCTTATTCTTGA GACTAAGAGACTCAGCATCATCGTATATATAGAGATTTGCCGTCCTTCTCTGCTTCAGGACCATCGTTCAACCCG CTTCGTTGCGTCGGAATCAAGGTCAATTCCTATTCTCTGACATGACTTGGCCACGCGACACTGACACTTATTAAC AGCGGTCCTCGGGCTTCGCGCCTCTATCAACCCTCCTTTTTGTTCTCGTCGGTCCTTGACGGAATCCTGCAGCAA CACTTTAGACCGTTCTCTCGAATAGCATGGGTGTCTTTACTCCCCCCCCCATCATTGCCCTGGCGTACGTCGGCG TACGCTTGTTTCAAATATTTCTCCTCCTGGTCAGTCATCCCTTTACCTCTTTTTTGGCTTCGACGGTGCTGATGG TCTTCTCATAGACGCCCATCGTCGGCCTTCTCGCCTTCTTCACCGACACCACCTTGTCTCGATTCGGCTTCATCG ACATCAGGCTACTGCCAGAAGGAGTGGCCATCATCTTCATCACCTCCATCGTCGCCCTCGGATGGTGCATCCTCA CCATCATCGCCCTATTCGTCGCCAATCTCGACGGCAAGTTTATAGCCATCATCGACTTGGGCATCATGGGCGCCC TCATCGGAGGCGTCGTCCGTCTGCGCTTCATCCAGTTCTCCTGTCTCGTTCGTCGATTCTTCCGCACGGCGTTGA CGGACTTGGCCTTTCGACTGTGCGTCTCCGTCAAAGCCAGCTGGATTCTCGCCATTATCGCCGTCATCATGTTCT TCATATCGGCCGTGTTGGCTCTCGCTGCTTCTCTGCTTAGACAGCCCTTTCGCTTTGGCGGTAAGAGGAGGAGGA GAGCGGTGGACAGTGGGGGGGTGCACGTTCACGTTGATACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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