© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06980 |
| Gene name | |
| Location | scaffold_09:225721..227668 |
| Strand | + |
| Gene length (bp) | 1947 |
| Transcript length (bp) | 1791 |
| Coding sequence length (bp) | 1791 |
| Protein length (aa) | 597 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 3.8E-66 | 119 | 557 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.1E-13 | 157 | 481 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 181 | 198 | 17 |
| 2 | 208 | 230 | 22 |
| 3 | 237 | 259 | 22 |
| 4 | 274 | 296 | 22 |
| 5 | 360 | 382 | 22 |
| 6 | 392 | 414 | 22 |
| 7 | 421 | 443 | 22 |
| 8 | 456 | 478 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.00 | 0.0 | 0.00 |
| Alive | In ants, during behavior modification | 0.01 | 0.0 | 0.09 |
| Dead | In ants, recently dead | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 1.0 | no |
| Alive | Dead | 1.0 | no |
| Dead | Fungus | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06980 MTATIATFDSPPPKSLRPDPSDDGPFEWEKNSGLPELGKLETMTTMGEDDSPFGRLRMMEESLWFSQKLGNSETR NRGPSDKNLTFFQCCRKYYKALAWSGVLLSTMITMAYSKSLVIAILSTPNFEREFGVPRNPDDPSAGLIIEPFWQ IALQDASLAGEVVGLMMCGPLTEIVGYRKMMIASLTWACIGVFPAVFFDDLPTLLGSQIVLGISWGVIEILAFMY AAELVPHRLRDVVISSANMCWLIGKLLSAGFLDGFGDKDLGWTAGLPFVFQWVCAVPALLAVFFVPESPWWLIRR GRLRDACLSLDRLSSSKDTDADAAVALMDHTNKTEMKLKYGGARAVDMFKGTNRRRTEIACMVWICQAFSGSSIV NYAPYLMQRAGLDASASGTFATIMYGIAVTGGILSLFVVQYVGRRLLYLLGLGSAVVFLVVAGIVSVALPPSFAV GWTLTALIIVTKLTYDLSIGPVCYILVTEVPAMRLRLNTVAFGRIIYNIGKMANNVVMPQMTNPETWDWKGKVCF VYAGTSLACFIWCYFRLPETKGLAHIEIDILFELKAPANKFAAFRKQLEKTPYNSAVNHDKNPWHGWLSYA* |
| Coding | >Ophcf2|06980 ATGACAGCCACGATTGCAACGTTCGACTCCCCCCCGCCAAAGAGCCTCAGGCCGGACCCGTCGGACGATGGCCCC TTCGAGTGGGAGAAGAATAGCGGCTTGCCGGAGCTGGGCAAGCTGGAGACGATGACGACAATGGGCGAAGACGAC TCGCCCTTTGGAAGGCTGAGGATGATGGAGGAGTCTCTCTGGTTCTCGCAGAAGTTGGGGAACTCGGAGACGAGA AACAGAGGCCCCTCGGACAAGAACCTGACCTTTTTCCAATGCTGCCGCAAGTATTACAAGGCACTGGCCTGGTCG GGCGTGCTTCTCTCGACCATGATCACCATGGCCTACAGCAAGTCTCTCGTCATCGCCATCCTCTCGACGCCCAAC TTCGAACGCGAGTTTGGCGTTCCGAGGAATCCCGACGACCCTTCGGCTGGCTTGATCATCGAGCCCTTCTGGCAG ATTGCCCTGCAGGATGCTTCTCTCGCGGGCGAGGTTGTGGGACTGATGATGTGTGGTCCGCTGACGGAGATTGTC GGTTACCGCAAGATGATGATTGCGAGTCTGACGTGGGCTTGTATCGGGGTGTTTCCGGCGGTCTTCTTTGACGAT CTACCGACCTTGCTGGGGTCGCAGATTGTTCTCGGCATATCATGGGGAGTCATCGAGATCCTCGCCTTCATGTAC GCGGCCGAGCTGGTGCCTCACCGACTCCGAGATGTCGTCATCAGCAGCGCCAACATGTGCTGGCTCATCGGGAAA CTCTTGTCTGCCGGATTCCTCGACGGTTTCGGCGACAAGGACCTGGGCTGGACGGCTGGGCTGCCCTTCGTCTTT CAATGGGTCTGTGCCGTTCCTGCTCTCCTGGCCGTCTTTTTCGTTCCCGAGAGTCCTTGGTGGCTTATACGCCGT GGTCGGTTGAGAGACGCCTGTCTTTCCCTCGACCGGCTCTCCAGCAGCAAGGATACCGACGCCGACGCAGCGGTG GCCCTGATGGACCACACCAACAAGACCGAGATGAAGCTCAAGTACGGCGGAGCGAGGGCCGTAGACATGTTCAAG GGGACGAATCGACGCCGTACCGAGATAGCCTGCATGGTCTGGATCTGTCAGGCCTTCTCCGGCAGCTCCATCGTC AACTACGCCCCCTATCTCATGCAGAGAGCCGGGCTCGACGCCTCGGCCTCGGGCACCTTCGCCACCATCATGTAC GGCATCGCCGTGACGGGCGGCATCCTATCTCTCTTTGTCGTCCAGTACGTCGGCAGACGACTTCTCTATCTCCTG GGTCTCGGATCGGCAGTCGTCTTCCTCGTCGTCGCGGGCATCGTCTCCGTCGCCCTCCCCCCGAGCTTCGCCGTC GGCTGGACCTTGACTGCTCTCATAATCGTCACCAAGCTCACCTACGACCTCTCCATCGGCCCCGTCTGCTACATA CTCGTCACCGAGGTTCCCGCAATGCGTCTTCGTCTCAACACGGTCGCCTTTGGAAGGATCATCTACAACATCGGA AAGATGGCCAACAACGTCGTCATGCCGCAGATGACCAACCCCGAGACCTGGGACTGGAAGGGAAAAGTCTGCTTC GTCTACGCCGGCACTTCTCTCGCCTGTTTCATCTGGTGCTACTTCCGCTTGCCCGAGACCAAGGGCCTCGCTCAC ATCGAGATTGACATTCTCTTCGAGCTCAAGGCTCCGGCCAACAAGTTTGCTGCCTTTCGGAAACAGCTGGAGAAG ACGCCGTATAATTCGGCCGTGAATCACGACAAGAACCCATGGCACGGGTGGCTTTCGTATGCGTAG |
| Transcript | >Ophcf2|06980 ATGACAGCCACGATTGCAACGTTCGACTCCCCCCCGCCAAAGAGCCTCAGGCCGGACCCGTCGGACGATGGCCCC TTCGAGTGGGAGAAGAATAGCGGCTTGCCGGAGCTGGGCAAGCTGGAGACGATGACGACAATGGGCGAAGACGAC TCGCCCTTTGGAAGGCTGAGGATGATGGAGGAGTCTCTCTGGTTCTCGCAGAAGTTGGGGAACTCGGAGACGAGA AACAGAGGCCCCTCGGACAAGAACCTGACCTTTTTCCAATGCTGCCGCAAGTATTACAAGGCACTGGCCTGGTCG GGCGTGCTTCTCTCGACCATGATCACCATGGCCTACAGCAAGTCTCTCGTCATCGCCATCCTCTCGACGCCCAAC TTCGAACGCGAGTTTGGCGTTCCGAGGAATCCCGACGACCCTTCGGCTGGCTTGATCATCGAGCCCTTCTGGCAG ATTGCCCTGCAGGATGCTTCTCTCGCGGGCGAGGTTGTGGGACTGATGATGTGTGGTCCGCTGACGGAGATTGTC GGTTACCGCAAGATGATGATTGCGAGTCTGACGTGGGCTTGTATCGGGGTGTTTCCGGCGGTCTTCTTTGACGAT CTACCGACCTTGCTGGGGTCGCAGATTGTTCTCGGCATATCATGGGGAGTCATCGAGATCCTCGCCTTCATGTAC GCGGCCGAGCTGGTGCCTCACCGACTCCGAGATGTCGTCATCAGCAGCGCCAACATGTGCTGGCTCATCGGGAAA CTCTTGTCTGCCGGATTCCTCGACGGTTTCGGCGACAAGGACCTGGGCTGGACGGCTGGGCTGCCCTTCGTCTTT CAATGGGTCTGTGCCGTTCCTGCTCTCCTGGCCGTCTTTTTCGTTCCCGAGAGTCCTTGGTGGCTTATACGCCGT GGTCGGTTGAGAGACGCCTGTCTTTCCCTCGACCGGCTCTCCAGCAGCAAGGATACCGACGCCGACGCAGCGGTG GCCCTGATGGACCACACCAACAAGACCGAGATGAAGCTCAAGTACGGCGGAGCGAGGGCCGTAGACATGTTCAAG GGGACGAATCGACGCCGTACCGAGATAGCCTGCATGGTCTGGATCTGTCAGGCCTTCTCCGGCAGCTCCATCGTC AACTACGCCCCCTATCTCATGCAGAGAGCCGGGCTCGACGCCTCGGCCTCGGGCACCTTCGCCACCATCATGTAC GGCATCGCCGTGACGGGCGGCATCCTATCTCTCTTTGTCGTCCAGTACGTCGGCAGACGACTTCTCTATCTCCTG GGTCTCGGATCGGCAGTCGTCTTCCTCGTCGTCGCGGGCATCGTCTCCGTCGCCCTCCCCCCGAGCTTCGCCGTC GGCTGGACCTTGACTGCTCTCATAATCGTCACCAAGCTCACCTACGACCTCTCCATCGGCCCCGTCTGCTACATA CTCGTCACCGAGGTTCCCGCAATGCGTCTTCGTCTCAACACGGTCGCCTTTGGAAGGATCATCTACAACATCGGA AAGATGGCCAACAACGTCGTCATGCCGCAGATGACCAACCCCGAGACCTGGGACTGGAAGGGAAAAGTCTGCTTC GTCTACGCCGGCACTTCTCTCGCCTGTTTCATCTGGTGCTACTTCCGCTTGCCCGAGACCAAGGGCCTCGCTCAC ATCGAGATTGACATTCTCTTCGAGCTCAAGGCTCCGGCCAACAAGTTTGCTGCCTTTCGGAAACAGCTGGAGAAG ACGCCGTATAATTCGGCCGTGAATCACGACAAGAACCCATGGCACGGGTGGCTTTCGTATGCGTAG |
| Gene | >Ophcf2|06980 ATGACAGCCACGATTGCAACGTTCGACTCCCCCCCGCCAAAGAGCCTCAGGCCGGACCCGTCGGACGATGGCCCC TTCGAGTGGGAGAAGAATAGCGGCTTGCCGGAGCTGGGCAAGCTGGAGACGATGACGACAATGGGCGAAGACGAC TCGCCCTTTGGAAGGCTGAGGATGATGGAGGAGTCTCTCTGGTTCTCGCAGAAGTTGGGGAACTCGGAGACGAGA AACAGAGGCCCCTCGGACAAGAACCTGACCTTTTTCCAATGCTGCCGCAAGTATTACAAGGCACTGGCCTGGTCG GGCGTGCTTCTCTCGACCATGATCACCATGGCCTACAGCAAGTCTCTCGTCATCGCCATCCTCTCGACGCCCAAC TTCGAACGCGAGTTTGGCGTTCCGAGGAATCCCGACGACCCTTCGGCTGGCTTGATCATCGAGCCCTTCTGGCAG ATTGCCCTGCAGGATGCTTCTCTCGCGGGCGAGGTTGTGGGACTGATGATGTGTGGTCCGCTGACGGAGATTGTC GGTTACCGCAAGATGATGATTGCGAGTCTGACGTGGGCTTGTATCGGGGTGTTTCCGGCGGTCTTCTTTGACGAT CTACCGACCTTGCTGGGGTCGCAGATTGTTCTCGGTTCGTTTTGTTGTAGTTCGAACGACTGATGTGCTGTTGCT GATGCTCACATACGACGTATGTACGGAAAACACCAGGCATATCATGGGGAGTCATCGAGATCCTCGCCTTCATGT ACGCGGCCGAGCTGGTGCCTCACCGACTCCGAGATGTCGTCATCAGCAGCGCCAACATGTGCTGGCTCATCGGGA AACTCTTGTCTGCCGGATTCCTCGACGGTTTCGGCGACAAGGACCTGGGCTGGACGGCTGGGCTGCCCTTCGTCT TTCAATGGGTCTGTGCCGTTCCTGCTCTCCTGGCCGTCTTTTTCGTTCCCGAGAGTCCTTGTGAGTCGGTCACGA ACAGCTCTCTCTATACGGAAGAGGTGTATACATGGCACTAACATCATGTCCAACGTCTTTCAAGGGTGGCTTATA CGCCGTGGTCGGTTGAGAGACGCCTGTCTTTCCCTCGACCGGCTCTCCAGCAGCAAGGATACCGACGCCGACGCA GCGGTGGCCCTGATGGACCACACCAACAAGACCGAGATGAAGCTCAAGTACGGCGGAGCGAGGGCCGTAGACATG TTCAAGGGGACGAATCGACGCCGTACCGAGATAGCCTGCATGGTCTGGATCTGTCAGGCCTTCTCCGGCAGCTCC ATCGTCAACTACGCCCCCTATCTCATGCAGAGAGCCGGGCTCGACGCCTCGGCCTCGGGCACCTTCGCCACCATC ATGTACGGCATCGCCGTGACGGGCGGCATCCTATCTCTCTTTGTCGTCCAGTACGTCGGCAGACGACTTCTCTAT CTCCTGGGTCTCGGATCGGCAGTCGTCTTCCTCGTCGTCGCGGGCATCGTCTCCGTCGCCCTCCCCCCGAGCTTC GCCGTCGGCTGGACCTTGACTGCTCTCATAATCGTCACCAAGCTCACCTACGACCTCTCCATCGGCCCCGTCTGC TACATACTCGTCACCGAGGTTCCCGCAATGCGTCTTCGTCTCAACACGGTCGCCTTTGGAAGGATCATCTACAAC ATCGGAAAGATGGCCAACAACGTCGTCATGCCGCAGATGACCAACCCCGAGACCTGGGACTGGAAGGGAAAAGTC TGCTTCGTCTACGCCGGCACTTCTCTCGCCTGTTTCATCTGGTGCTACTTCCGCTTGCCCGAGACCAAGGGCCTC GCTCACATCGAGATTGACATTCTCTTCGAGCTCAAGGCTCCGGCCAACAAGTTTGCTGCCTTTCGGAAACAGCTG GAGAAGACGCCGTATAATTCGGCCGTGAATCACGACAAGAACCCATGGCACGGGTGGCTTTCGTATGCGTAG |