© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06978 |
| Gene name | |
| Location | scaffold_09:213225..215008 |
| Strand | + |
| Gene length (bp) | 1783 |
| Transcript length (bp) | 1479 |
| Coding sequence length (bp) | 1479 |
| Protein length (aa) | 493 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01222 | ERG4_ERG24 | Ergosterol biosynthesis ERG4/ERG24 family | 1.8E-166 | 21 | 492 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Yes |
| GO:0016020 | membrane | Yes |
| GO:0016126 | sterol biosynthetic process | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006694 | steroid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | No |
| GO:0016125 | sterol metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901617 | organic hydroxy compound biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 86 | 108 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 165 | 187 | 22 |
| 5 | 257 | 276 | 19 |
| 6 | 296 | 315 | 19 |
| 7 | 327 | 346 | 19 |
| 8 | 440 | 459 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 141.53 | 77.61 | 205.46 |
| Alive | In ants, during behavior modification | 72.56 | 41.07 | 104.05 |
| Dead | In ants, recently dead | 107.63 | 60.28 | 154.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000851 | yes |
| Alive | Dead | 0.012830 | yes |
| Dead | Fungus | 0.173065 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06978 MKHHERTSLSITMAPNSVAEHGYEFFGPPGAFGISFGLPLLVYAFTFACNDVSGCPAPALLRPSTLSSDQLKLQV GWPEDGVWGLASWKATGALLAYYALNLVLYRVLPAAQTEGTVLASGGRLKYRLNTMYSNTMTLAVLAAGTVAQGA DFSVWRFIDENYVQLLTASIGISYAMSTFVYVRSFGVKPGNKDGRELAAGGHSGNMLYDWFIGRELNPRVVVPLI GEVDIKEWCELRPGMMGWIVLNCAWCVRQYRNYGYVTDSILCITAVQAVYTVDSWWNEAAILTTMDITTDGFGMM LAFGDLVWVPFVYSLQTRYLSVHPRSLGPAGLVAMLSLIGLGFFIFRSANSQKNVFRTNPEDPSVSNLEYIETKT GSRLLTTGWWGVARHINYLGDWIQAWPYSLPTGLAGYQVLAAGTGSEGAYVMMDGREVVAGEAKGWGMVVTYFYI VYFAVLLIHRDRRDDEKCQRKYGEDWTKYKKLVRWRIVPGLY* |
| Coding | >Ophcf2|06978 ATGAAGCATCACGAGAGAACATCGCTCTCCATCACAATGGCGCCCAACTCAGTTGCAGAGCACGGCTACGAATTC TTCGGACCCCCCGGGGCCTTCGGCATCTCCTTCGGTCTGCCCCTTCTCGTTTACGCCTTTACCTTTGCCTGCAAC GATGTCTCAGGCTGTCCGGCGCCCGCGTTGCTCCGCCCGTCGACGTTGTCTTCGGACCAGTTGAAGCTTCAGGTT GGCTGGCCCGAGGATGGCGTTTGGGGTCTGGCCAGCTGGAAGGCGACGGGCGCCTTACTGGCTTATTACGCCCTC AACCTCGTCCTGTACCGCGTGCTGCCTGCCGCTCAAACCGAGGGTACCGTTCTGGCCTCGGGTGGGCGACTCAAG TATAGGCTCAACACCATGTATTCCAACACGATGACTCTCGCCGTGCTCGCCGCGGGCACCGTTGCTCAAGGCGCC GACTTTTCCGTCTGGCGCTTCATCGACGAGAACTACGTGCAGCTGCTGACGGCGAGCATCGGCATCTCGTATGCC ATGTCCACCTTTGTCTACGTCCGGAGCTTCGGCGTCAAGCCCGGCAACAAAGATGGCCGCGAGCTGGCAGCGGGC GGACACAGCGGCAACATGCTGTACGACTGGTTCATCGGACGGGAGCTTAATCCCAGAGTCGTCGTGCCGCTCATC GGCGAGGTGGACATCAAGGAGTGGTGCGAGCTGCGACCGGGTATGATGGGCTGGATCGTGCTCAACTGCGCCTGG TGCGTCCGTCAGTATCGCAACTATGGTTACGTGACGGATAGTATCTTGTGCATCACCGCCGTTCAGGCCGTTTAC ACGGTCGATTCGTGGTGGAACGAGGCGGCCATTCTGACGACCATGGACATTACCACCGACGGCTTCGGCATGATG CTGGCGTTTGGCGACCTGGTATGGGTGCCCTTTGTCTACTCGCTACAGACGCGCTACCTCTCGGTGCATCCGCGC TCGCTAGGACCCGCGGGCTTGGTGGCGATGCTCAGCCTCATCGGCCTTGGCTTCTTCATCTTCCGGTCGGCCAAC AGCCAGAAGAACGTGTTTAGGACGAACCCCGAGGACCCCAGCGTCTCCAACCTCGAATACATCGAGACCAAGACA GGCAGCCGGCTGCTGACGACGGGCTGGTGGGGGGTGGCGCGGCACATCAACTACCTGGGCGACTGGATCCAGGCG TGGCCGTACAGCTTGCCGACGGGCCTGGCCGGGTACCAGGTGCTGGCGGCCGGGACGGGCTCCGAGGGCGCGTAC GTGATGATGGATGGCCGCGAGGTGGTGGCCGGCGAAGCCAAGGGCTGGGGCATGGTGGTGACGTACTTTTACATT GTCTACTTTGCCGTGCTGCTGATCCATCGCGACCGACGCGACGACGAAAAGTGCCAGCGCAAGTACGGCGAGGAT TGGACCAAGTACAAGAAGCTTGTGCGATGGCGCATCGTCCCGGGCCTATACTGA |
| Transcript | >Ophcf2|06978 ATGAAGCATCACGAGAGAACATCGCTCTCCATCACAATGGCGCCCAACTCAGTTGCAGAGCACGGCTACGAATTC TTCGGACCCCCCGGGGCCTTCGGCATCTCCTTCGGTCTGCCCCTTCTCGTTTACGCCTTTACCTTTGCCTGCAAC GATGTCTCAGGCTGTCCGGCGCCCGCGTTGCTCCGCCCGTCGACGTTGTCTTCGGACCAGTTGAAGCTTCAGGTT GGCTGGCCCGAGGATGGCGTTTGGGGTCTGGCCAGCTGGAAGGCGACGGGCGCCTTACTGGCTTATTACGCCCTC AACCTCGTCCTGTACCGCGTGCTGCCTGCCGCTCAAACCGAGGGTACCGTTCTGGCCTCGGGTGGGCGACTCAAG TATAGGCTCAACACCATGTATTCCAACACGATGACTCTCGCCGTGCTCGCCGCGGGCACCGTTGCTCAAGGCGCC GACTTTTCCGTCTGGCGCTTCATCGACGAGAACTACGTGCAGCTGCTGACGGCGAGCATCGGCATCTCGTATGCC ATGTCCACCTTTGTCTACGTCCGGAGCTTCGGCGTCAAGCCCGGCAACAAAGATGGCCGCGAGCTGGCAGCGGGC GGACACAGCGGCAACATGCTGTACGACTGGTTCATCGGACGGGAGCTTAATCCCAGAGTCGTCGTGCCGCTCATC GGCGAGGTGGACATCAAGGAGTGGTGCGAGCTGCGACCGGGTATGATGGGCTGGATCGTGCTCAACTGCGCCTGG TGCGTCCGTCAGTATCGCAACTATGGTTACGTGACGGATAGTATCTTGTGCATCACCGCCGTTCAGGCCGTTTAC ACGGTCGATTCGTGGTGGAACGAGGCGGCCATTCTGACGACCATGGACATTACCACCGACGGCTTCGGCATGATG CTGGCGTTTGGCGACCTGGTATGGGTGCCCTTTGTCTACTCGCTACAGACGCGCTACCTCTCGGTGCATCCGCGC TCGCTAGGACCCGCGGGCTTGGTGGCGATGCTCAGCCTCATCGGCCTTGGCTTCTTCATCTTCCGGTCGGCCAAC AGCCAGAAGAACGTGTTTAGGACGAACCCCGAGGACCCCAGCGTCTCCAACCTCGAATACATCGAGACCAAGACA GGCAGCCGGCTGCTGACGACGGGCTGGTGGGGGGTGGCGCGGCACATCAACTACCTGGGCGACTGGATCCAGGCG TGGCCGTACAGCTTGCCGACGGGCCTGGCCGGGTACCAGGTGCTGGCGGCCGGGACGGGCTCCGAGGGCGCGTAC GTGATGATGGATGGCCGCGAGGTGGTGGCCGGCGAAGCCAAGGGCTGGGGCATGGTGGTGACGTACTTTTACATT GTCTACTTTGCCGTGCTGCTGATCCATCGCGACCGACGCGACGACGAAAAGTGCCAGCGCAAGTACGGCGAGGAT TGGACCAAGTACAAGAAGCTTGTGCGATGGCGCATCGTCCCGGGCCTATACTGA |
| Gene | >Ophcf2|06978 ATGAAGCATCACGAGTTGGATACCTCGATAAACCCAGAGGCGCAGCGTGGCGTTATTCTATAATCTACGAATACA TCAATCGTACATACCTAGGTAGATAAGCTCCGTCATATCGTCGAAAGGAGAACATCGCTGTAAGCAATATCGTTA TACCCATCTACAAAGACTGATCATCTCATCTCGAAACCCGACCTGATTTTTTCCCTCGCACAAGCTCCATCACAA TGGCGCCCAACTCAGTTGCAGAGCACGGCTACGAATTCTTCGGACCGTACGTCGCCCCGCTCCCGCCGACCGGCC TCCGTCCGCGCTGACTTTCCGCCGCTGCAGCCCCGGGGCCTTCGGCATCTCCTTCGGTCTGCCCCTTCTCGTTTA CGCCTTTACCTTTGCCTGCAACGATGTCTCAGGCTGTCCGGCGCCCGCGTTGCTCCGCCCGTCGACGTTGTCTTC GGACCAGTTGAAGCTTCAGGTTGGCTGGCCCGAGGATGGCGTTTGGGGTCTGGCCAGCTGGAAGGCGACGGGCGC CTTACTGGCTTATTACGCCCTCAACCTCGTCCTGTACCGCGTGCTGCCTGCCGCTCAAACCGAGGGTACCGTTCT GGCCTCGGGTGGGCGACTCAAGTATAGGCTCAACAGTGAGTGACGTGGTCGAGCTCCGGAGTAGCATCGTGCTGA TGATTCGGGGGTCGCAGCCATGTATTCCAACACGATGACTCTCGCCGTGCTCGCCGCGGGCACCGTTGCTCAAGG CGCCGACTTTTCCGTCTGGCGCTTCATCGACGAGAACTACGTGCAGCTGCTGACGGCGAGCATCGGCATCTCGTA TGCCATGTCCACCTTTGTCTACGTCCGGAGCTTCGGCGTCAAGCCCGGCAACAAAGATGGCCGCGAGCTGGCAGC GGGCGGACACAGCGGCAACATGCTGTACGACTGGTTCATCGGACGGGAGCTTAATCCCAGAGTCGTCGTGCCGCT CATCGGCGAGGTGGACATCAAGGAGTGGTGCGAGCTGCGACCGGGTATGATGGGCTGGATCGTGCTCAACTGCGC CTGGTGCGTCCGTCAGTATCGCAACTATGGTTACGTGACGGATAGTATCTTGTGCATCACCGCCGTTCAGGCCGT TTACACGGTCGATTCGTGGTGGAACGAGGCGGCCATTCTGACGACCATGGACATTACCACCGACGGCTTCGGCAT GATGCTGGCGTTTGGCGACCTGGTATGGGTGCCCTTTGTCTACTCGCTACAGACGCGCTACCTCTCGGTGCATCC GCGCTCGCTAGGACCCGCGGGCTTGGTGGCGATGCTCAGCCTCATCGGCCTTGGCTTCTTCATCTTCCGGTCGGC CAACAGCCAGAAGAACGTGTTTAGGACGAACCCCGAGGACCCCAGCGTCTCCAACCTCGAATACATCGAGACCAA GACAGGCAGCCGGCTGCTGACGACGGGCTGGTGGGGGGTGGCGCGGCACATCAACTACCTGGGCGACTGGATCCA GGCGTGGCCGTACAGCTTGCCGACGGGCCTGGCCGGGTACCAGGTGCTGGCGGCCGGGACGGGCTCCGAGGGCGC GTACGTGATGATGGATGGCCGCGAGGTGGTGGCCGGCGAAGCCAAGGGCTGGGGCATGGTGGTGACGTACTTTTA CATTGTCTACTTTGCCGTGCTGCTGATCCATCGCGACCGACGCGACGACGAAAAGTGCCAGCGCAAGTACGGCGA GGATTGGACCAAGTACAAGAAGCTTGTGCGATGGCGCATCGTCCCGGGCCTATACTGA |