© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06948 |
| Gene name | |
| Location | scaffold_09:77134..78974 |
| Strand | - |
| Gene length (bp) | 1840 |
| Transcript length (bp) | 1575 |
| Coding sequence length (bp) | 1575 |
| Protein length (aa) | 525 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 5.7E-80 | 53 | 503 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.2E-18 | 58 | 328 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.3E-11 | 305 | 493 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | 0.0753 | 0.1749 | 0.1204 | 0.4658 | 0.0364 | 0.0012 | 0.1702 | 0.241 | 0.2013 | 0.0026 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 50 | 72 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 116 | 135 | 19 |
| 4 | 145 | 167 | 22 |
| 5 | 180 | 199 | 19 |
| 6 | 209 | 231 | 22 |
| 7 | 300 | 322 | 22 |
| 8 | 337 | 356 | 19 |
| 9 | 368 | 390 | 22 |
| 10 | 405 | 427 | 22 |
| 11 | 440 | 462 | 22 |
| 12 | 467 | 489 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1178 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06948 MPSDPAVEIVGEKEAREAVVEVEGDAPFSGSAAAAAPLDPFSRTSFQLYAILLVAALNATASGFDGSIFSSINAM AQYQDYFNHKELGSATGLIFMMFTIGSMVGSLFSGPVCDNFGRRIGMAAGSVLIMTGAAIQTAARGDASLLAGRF VLGFGVAIGTSSAPTYALELAPPQWRARIVGYYNTFFYSGSILATGVAYASSKSTGEVAFRLPLSLQLVFPLFIL IGTAFIPESPRWLTMWGKKDEAGRILAKYHGGGNANHPLVLLELREFEANIELQKTSSVWNYWALVETHNARWRF AMMAFMSIFAQLSGNSVLTYYLPSMYRQVGITTTERRLLLTFLNSIVSCIGAIAGSATNDRMGRRSKLWIGSFVL AGLLGAVTGFSSQFGDASKKVGVEISNSGVAFIFLFGFAYSYVYTPLTSTYCGEVLANPTRAKGMGVHVLLGNMA NLYNAYVTAIAFEAVGWRYYLVFVGLNLVYGVLWYVFGVETRGRTLEEMDAVFDAKFPPRAALRRPTEFQVKGS* |
| Coding | >Ophcf2|06948 ATGCCTTCGGATCCTGCCGTCGAAATTGTCGGGGAAAAGGAGGCTCGAGAAGCCGTCGTCGAGGTCGAAGGCGAT GCTCCATTCTCCGGTTCTGCCGCGGCTGCCGCGCCTTTAGACCCGTTCTCCAGGACGAGCTTCCAGCTTTATGCC ATCCTGCTTGTTGCTGCGCTCAACGCGACGGCCTCTGGATTCGATGGATCCATCTTTAGTTCCATCAACGCTATG GCGCAGTATCAAGACTACTTCAACCACAAAGAACTCGGTTCAGCCACCGGCCTAATCTTCATGATGTTCACCATC GGAAGCATGGTCGGCTCTCTCTTCTCCGGCCCCGTCTGCGACAACTTCGGCCGCCGAATCGGCATGGCCGCCGGC TCCGTCCTGATCATGACCGGGGCTGCCATTCAGACAGCAGCCAGAGGCGACGCCTCACTCCTCGCTGGCCGCTTT GTCCTGGGTTTCGGCGTCGCCATTGGCACCTCGTCTGCCCCGACGTATGCGCTTGAACTTGCTCCGCCGCAGTGG CGAGCACGCATCGTCGGCTACTACAATACCTTCTTCTACTCCGGCTCCATCCTGGCAACCGGAGTCGCCTACGCC TCGAGTAAGTCTACAGGCGAAGTCGCCTTTCGGCTACCGCTATCTCTCCAGCTCGTCTTCCCCCTCTTCATCCTC ATCGGAACCGCCTTCATCCCCGAGTCGCCTCGTTGGCTCACCATGTGGGGGAAAAAGGACGAAGCCGGCCGCATC CTGGCCAAGTATCACGGAGGCGGCAATGCGAATCACCCGCTGGTCCTCCTCGAGCTGCGAGAGTTTGAAGCCAAC ATTGAACTTCAAAAGACTTCCAGCGTCTGGAATTACTGGGCTCTCGTGGAGACACACAACGCTCGCTGGCGCTTT GCCATGATGGCTTTCATGTCCATCTTCGCCCAGCTGTCAGGGAACTCGGTCTTGACGTACTATCTGCCATCCATG TATAGGCAGGTTGGCATCACAACTACTGAGCGTCGCCTGCTTCTCACCTTTCTCAACTCCATCGTTTCCTGCATC GGGGCTATTGCCGGCTCTGCGACGAACGACCGGATGGGAAGACGATCGAAGCTGTGGATTGGCAGTTTCGTCCTT GCTGGTCTCTTGGGCGCCGTCACAGGCTTCTCCAGTCAGTTTGGCGATGCCAGCAAGAAAGTAGGAGTTGAGATT TCCAACAGCGGCGTTGCTTTTATCTTTCTCTTCGGCTTTGCGTATTCCTACGTCTACACGCCGTTGACTAGCACC TACTGCGGCGAGGTGTTAGCGAACCCAACTCGAGCCAAGGGAATGGGCGTGCACGTCCTCTTGGGCAACATGGCC AACCTTTACAACGCATACGTCACGGCCATTGCGTTCGAAGCCGTTGGCTGGCGCTATTACCTCGTCTTCGTCGGT CTCAACCTCGTGTACGGTGTTTTGTGGTACGTCTTTGGCGTCGAAACTCGGGGGAGGACGCTGGAGGAGATGGAC GCTGTGTTTGATGCCAAGTTTCCGCCGAGGGCGGCGCTTCGGAGGCCGACTGAGTTTCAGGTGAAGGGGTCGTAG |
| Transcript | >Ophcf2|06948 ATGCCTTCGGATCCTGCCGTCGAAATTGTCGGGGAAAAGGAGGCTCGAGAAGCCGTCGTCGAGGTCGAAGGCGAT GCTCCATTCTCCGGTTCTGCCGCGGCTGCCGCGCCTTTAGACCCGTTCTCCAGGACGAGCTTCCAGCTTTATGCC ATCCTGCTTGTTGCTGCGCTCAACGCGACGGCCTCTGGATTCGATGGATCCATCTTTAGTTCCATCAACGCTATG GCGCAGTATCAAGACTACTTCAACCACAAAGAACTCGGTTCAGCCACCGGCCTAATCTTCATGATGTTCACCATC GGAAGCATGGTCGGCTCTCTCTTCTCCGGCCCCGTCTGCGACAACTTCGGCCGCCGAATCGGCATGGCCGCCGGC TCCGTCCTGATCATGACCGGGGCTGCCATTCAGACAGCAGCCAGAGGCGACGCCTCACTCCTCGCTGGCCGCTTT GTCCTGGGTTTCGGCGTCGCCATTGGCACCTCGTCTGCCCCGACGTATGCGCTTGAACTTGCTCCGCCGCAGTGG CGAGCACGCATCGTCGGCTACTACAATACCTTCTTCTACTCCGGCTCCATCCTGGCAACCGGAGTCGCCTACGCC TCGAGTAAGTCTACAGGCGAAGTCGCCTTTCGGCTACCGCTATCTCTCCAGCTCGTCTTCCCCCTCTTCATCCTC ATCGGAACCGCCTTCATCCCCGAGTCGCCTCGTTGGCTCACCATGTGGGGGAAAAAGGACGAAGCCGGCCGCATC CTGGCCAAGTATCACGGAGGCGGCAATGCGAATCACCCGCTGGTCCTCCTCGAGCTGCGAGAGTTTGAAGCCAAC ATTGAACTTCAAAAGACTTCCAGCGTCTGGAATTACTGGGCTCTCGTGGAGACACACAACGCTCGCTGGCGCTTT GCCATGATGGCTTTCATGTCCATCTTCGCCCAGCTGTCAGGGAACTCGGTCTTGACGTACTATCTGCCATCCATG TATAGGCAGGTTGGCATCACAACTACTGAGCGTCGCCTGCTTCTCACCTTTCTCAACTCCATCGTTTCCTGCATC GGGGCTATTGCCGGCTCTGCGACGAACGACCGGATGGGAAGACGATCGAAGCTGTGGATTGGCAGTTTCGTCCTT GCTGGTCTCTTGGGCGCCGTCACAGGCTTCTCCAGTCAGTTTGGCGATGCCAGCAAGAAAGTAGGAGTTGAGATT TCCAACAGCGGCGTTGCTTTTATCTTTCTCTTCGGCTTTGCGTATTCCTACGTCTACACGCCGTTGACTAGCACC TACTGCGGCGAGGTGTTAGCGAACCCAACTCGAGCCAAGGGAATGGGCGTGCACGTCCTCTTGGGCAACATGGCC AACCTTTACAACGCATACGTCACGGCCATTGCGTTCGAAGCCGTTGGCTGGCGCTATTACCTCGTCTTCGTCGGT CTCAACCTCGTGTACGGTGTTTTGTGGTACGTCTTTGGCGTCGAAACTCGGGGGAGGACGCTGGAGGAGATGGAC GCTGTGTTTGATGCCAAGTTTCCGCCGAGGGCGGCGCTTCGGAGGCCGACTGAGTTTCAGGTGAAGGGGTCGTAG |
| Gene | >Ophcf2|06948 ATGCCTTCGGATCCTGCCGTCGAAATTGTCGGGGAAAAGGAGGCTCGAGAAGCCGTCGTCGAGGTCGAAGGCGAT GCTCCATTCTCCGGTTCTGCCGCGGCTGCCGCGCCTTTAGACCCGTTCTCCAGGACGAGCTTCCAGCTTTATGCC ATCCTGCTTGTTGCTGCGCTCAACGCGACGGCCTCTGGATTCGATGGAGTGAGATTCGCCCTGTCAGCGAGTTTG AGAGAGGTGTTGTCGTTGACGGGAATAGTCCATCTTTAGTTCCATCAACGCTATGGCGCAGTATCAAGACTACTT CAACCACAAAGAACTCGGTTCAGCCACCGGCCTGTAAGTCTATCACTTCTCTCTGCACATTGCGTCTAACAAGCC CCTTAGAATCTTCATGATGTTCACCATCGGAAGCATGGTCGGCTCTCTCTTCTCCGGCCCCGTCTGCGACAACTT CGGCCGCCGAATCGGCATGGCCGCCGGCTCCGTCCTGATCATGACCGGGGCTGCCATTCAGACAGCAGCCAGAGG CGACGCCTCACTCCTCGCTGGCCGCTTTGTCCTGGGTTTCGGCGTCGCCATTGGCACCTCGTCTGCCCCGACGTA TGCGCTTGAACTTGCTCCGCCGCAGTGGCGAGCACGCATCGTCGGCTACTACAATACCTGTATGGCGCTTCCTCG ATATAGAAAGCTCTCGTTACTCACTTCATACAGTCTTCTACTCCGGCTCCATCCTGGCAACCGGAGTCGCCTACG CCTCGAGTAAGTCTACAGGCGAAGTCGCCTTTCGGCTACCGCTATCTCTCCAGCTCGTCTTCCCCCTCTTCATCC TCATCGGAACCGCCTTCATCCCCGAGTCGCCTCGTTGGCTCACCATGTGGGGGAAAAAGGACGAAGCCGGCCGCA TCCTGGCCAAGTATCACGGAGGCGGCAATGCGAATCACCCGCTGGTCCTCCTCGAGCTGCGAGAGTTTGAAGCCA ACATTGAACTTCAAAAGACTTCCAGCGTCTGGAATTACTGGGCTCTCGTGGAGACACACAACGCTCGCTGGCGCT TTGCCATGATGGCTTTCATGTCCATCTTCGCCCAGCTGTCAGGGAACTCGGTCTTGACGTACTATCTGCCATCCA TGTATAGGCAGGTTGGCATCACAACTACTGAGCGTCGCCTGCTTCTCACCTTTCTCAACTCCATCGTTTCCTGCA TCGGGGCTATTGCCGGCTCTGCGACGAACGACCGGATGGGAAGACGATCGAAGCTGTGGATTGGCAGTTTCGTCC TTGCTGGTCTCTTGGGCGCCGTCACAGGCTTCTCCAGTCAGTTTGGCGATGCCAGCAAGAAAGTAGGAGTTGAGA TTTCCAACAGCGGCGTTGCTTTTGTGAGAGAAACTACGATTCTTGACTTGAAGACAGCAGCTTACGATCAACTTC ATGACGCAGATCTTTCTCTTCGGCTTTGCGTATTCCTACGTCTACACGCCGTTGACTAGCACCTACTGCGGCGAG GTGTTAGCGAACCCAACTCGAGCCAAGGGAATGGGCGTGGTAAGTCGAGCTCGAAGCCTTCGCAACGCACTCAAC TCATCATCTCACCCAGCACGTCCTCTTGGGCAACATGGCCAACCTTTACAACGCATACGTCACGGCCATTGCGTT CGAAGCCGTTGGCTGGCGCTATTACCTCGTCTTCGTCGGTCTCAACCTCGTGTACGGTGTTTTGTGGTACGTCTT TGGCGTCGAAACTCGGGGGAGGACGCTGGAGGAGATGGACGCTGTGTTTGATGCCAAGTTTCCGCCGAGGGCGGC GCTTCGGAGGCCGACTGAGTTTCAGGTGAAGGGGTCGTAG |