© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06936 |
| Gene name | |
| Location | scaffold_09:27212..28998 |
| Strand | - |
| Gene length (bp) | 1786 |
| Transcript length (bp) | 1680 |
| Coding sequence length (bp) | 1680 |
| Protein length (aa) | 560 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 6.9E-112 | 53 | 519 |
| PF13520 | AA_permease_2 | Amino acid permease | 2.0E-16 | 57 | 494 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 83 | 105 | 22 |
| 3 | 134 | 156 | 22 |
| 4 | 163 | 185 | 22 |
| 5 | 189 | 211 | 22 |
| 6 | 283 | 305 | 22 |
| 7 | 337 | 359 | 22 |
| 8 | 385 | 407 | 22 |
| 9 | 417 | 439 | 22 |
| 10 | 460 | 479 | 19 |
| 11 | 494 | 511 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06936 MGSTAINPPAYSAPGQDHGGAPKDERPAQSVRESLSGDGAEADATHRKLKSRHVQLLGIGGTVGTALFVQIGKGL IDGGPGSLFIAFAFWCTFILAVTQCMAEMVTYLPISSPFIRFAGRYVDEAFGFAVGWNFFVFEAALVPFEVVACN LVIRFWTDAIPTAAVIVIIISLYALLNLLTVSWFGESEFWAAVGKVLLAVGLIVFTVVVMLGGNPRGDRFGFTFW NKPGAFAELYYPGPLGRWLGFLQCLIQAAFTIAGPDYVSMTAGEAQNPRVVMPRAYDAVFYRLTAFFVLGSLCVG ILVPYDDPEMRAAFVNSVSGAAASPYVVAMNRLGIRVLPHIVNAMILTSAFSAGNSYLYCASRSLYGLALEGKAP KIMTVCTKKGVPVYCVAFVLLFSLLAFLQLQANSAVVLSWFVSLVTASQLINFAMVCVTYLFFHRALKAQGIGRR HLPYRARFMPYAAWYGLIGTVIMAFVGGYKVFLPLPGFWNTPDFLFSYAMIPTFPLLYFAWKFTHKTQVHKPEQV DLFKGLAAIDEYERQYIPQPPRNYAEKVLDTVFG* |
| Coding | >Ophcf2|06936 ATGGGCTCGACGGCCATCAACCCGCCGGCCTACTCGGCTCCCGGTCAAGACCACGGCGGCGCCCCGAAGGACGAG CGGCCGGCGCAGAGCGTACGCGAGTCTCTCTCCGGAGACGGTGCCGAGGCCGACGCCACCCATCGGAAGCTCAAG TCGCGGCACGTCCAGCTGTTGGGCATCGGCGGCACTGTTGGCACAGCTCTCTTCGTCCAAATTGGAAAGGGTCTC ATTGATGGCGGTCCGGGAAGCTTGTTCATCGCCTTTGCCTTTTGGTGCACCTTTATCCTGGCGGTGACGCAGTGC ATGGCTGAGATGGTCACTTACCTTCCCATCTCATCGCCCTTTATCCGCTTCGCTGGCCGCTACGTTGATGAGGCC TTTGGCTTTGCCGTCGGTTGGAACTTTTTCGTCTTCGAGGCTGCTCTGGTGCCGTTTGAGGTGGTAGCCTGCAAC CTCGTTATCCGGTTCTGGACCGACGCCATCCCGACAGCCGCCGTCATCGTCATCATCATCTCTCTGTACGCCCTT CTCAACCTTCTGACCGTCAGTTGGTTCGGTGAGAGCGAGTTCTGGGCGGCTGTCGGCAAGGTTCTTTTGGCCGTC GGCCTCATTGTCTTCACAGTCGTCGTCATGCTGGGAGGCAACCCGCGAGGGGACCGGTTCGGCTTCACCTTTTGG AACAAGCCGGGCGCCTTTGCCGAGCTCTACTATCCTGGTCCGCTCGGCCGGTGGCTGGGCTTCTTGCAGTGCCTC ATACAGGCTGCTTTCACTATCGCAGGCCCGGACTATGTCTCCATGACGGCTGGCGAGGCCCAGAACCCGAGAGTC GTCATGCCGCGTGCCTACGACGCCGTCTTTTACCGTCTCACGGCCTTCTTCGTCCTCGGCTCCCTTTGCGTCGGC ATCCTGGTGCCGTACGACGATCCCGAGATGCGGGCTGCCTTTGTCAACTCCGTCTCAGGAGCGGCCGCTTCTCCC TACGTCGTGGCCATGAACCGACTCGGCATCCGCGTCTTGCCGCACATCGTCAACGCCATGATCCTGACCTCGGCT TTTTCCGCTGGCAACTCGTACCTTTACTGCGCTTCGCGCTCGCTCTACGGATTGGCCCTCGAGGGTAAGGCTCCC AAGATCATGACCGTCTGCACCAAGAAGGGCGTGCCTGTCTACTGCGTCGCTTTTGTCCTCTTGTTTTCTCTTCTA GCATTTCTTCAGCTTCAAGCCAACTCGGCCGTCGTCCTCAGCTGGTTCGTCTCGCTCGTCACCGCTTCTCAGCTC ATAAACTTTGCCATGGTCTGCGTCACCTATCTCTTCTTTCACCGCGCCCTTAAGGCCCAGGGCATAGGCCGTCGT CATCTGCCTTACCGGGCGCGCTTCATGCCCTACGCCGCCTGGTACGGCCTGATCGGCACTGTCATCATGGCGTTT GTCGGCGGCTACAAGGTCTTTCTACCTTTACCGGGCTTTTGGAATACTCCCGACTTTCTATTCTCCTATGCCATG ATTCCCACGTTTCCCCTCCTCTACTTTGCCTGGAAATTCACGCACAAGACACAAGTCCACAAGCCAGAACAGGTC GATCTCTTCAAGGGCCTGGCTGCCATTGATGAGTACGAGCGCCAGTATATACCTCAACCACCTCGTAATTACGCC GAGAAGGTGTTGGACACGGTTTTTGGATGA |
| Transcript | >Ophcf2|06936 ATGGGCTCGACGGCCATCAACCCGCCGGCCTACTCGGCTCCCGGTCAAGACCACGGCGGCGCCCCGAAGGACGAG CGGCCGGCGCAGAGCGTACGCGAGTCTCTCTCCGGAGACGGTGCCGAGGCCGACGCCACCCATCGGAAGCTCAAG TCGCGGCACGTCCAGCTGTTGGGCATCGGCGGCACTGTTGGCACAGCTCTCTTCGTCCAAATTGGAAAGGGTCTC ATTGATGGCGGTCCGGGAAGCTTGTTCATCGCCTTTGCCTTTTGGTGCACCTTTATCCTGGCGGTGACGCAGTGC ATGGCTGAGATGGTCACTTACCTTCCCATCTCATCGCCCTTTATCCGCTTCGCTGGCCGCTACGTTGATGAGGCC TTTGGCTTTGCCGTCGGTTGGAACTTTTTCGTCTTCGAGGCTGCTCTGGTGCCGTTTGAGGTGGTAGCCTGCAAC CTCGTTATCCGGTTCTGGACCGACGCCATCCCGACAGCCGCCGTCATCGTCATCATCATCTCTCTGTACGCCCTT CTCAACCTTCTGACCGTCAGTTGGTTCGGTGAGAGCGAGTTCTGGGCGGCTGTCGGCAAGGTTCTTTTGGCCGTC GGCCTCATTGTCTTCACAGTCGTCGTCATGCTGGGAGGCAACCCGCGAGGGGACCGGTTCGGCTTCACCTTTTGG AACAAGCCGGGCGCCTTTGCCGAGCTCTACTATCCTGGTCCGCTCGGCCGGTGGCTGGGCTTCTTGCAGTGCCTC ATACAGGCTGCTTTCACTATCGCAGGCCCGGACTATGTCTCCATGACGGCTGGCGAGGCCCAGAACCCGAGAGTC GTCATGCCGCGTGCCTACGACGCCGTCTTTTACCGTCTCACGGCCTTCTTCGTCCTCGGCTCCCTTTGCGTCGGC ATCCTGGTGCCGTACGACGATCCCGAGATGCGGGCTGCCTTTGTCAACTCCGTCTCAGGAGCGGCCGCTTCTCCC TACGTCGTGGCCATGAACCGACTCGGCATCCGCGTCTTGCCGCACATCGTCAACGCCATGATCCTGACCTCGGCT TTTTCCGCTGGCAACTCGTACCTTTACTGCGCTTCGCGCTCGCTCTACGGATTGGCCCTCGAGGGTAAGGCTCCC AAGATCATGACCGTCTGCACCAAGAAGGGCGTGCCTGTCTACTGCGTCGCTTTTGTCCTCTTGTTTTCTCTTCTA GCATTTCTTCAGCTTCAAGCCAACTCGGCCGTCGTCCTCAGCTGGTTCGTCTCGCTCGTCACCGCTTCTCAGCTC ATAAACTTTGCCATGGTCTGCGTCACCTATCTCTTCTTTCACCGCGCCCTTAAGGCCCAGGGCATAGGCCGTCGT CATCTGCCTTACCGGGCGCGCTTCATGCCCTACGCCGCCTGGTACGGCCTGATCGGCACTGTCATCATGGCGTTT GTCGGCGGCTACAAGGTCTTTCTACCTTTACCGGGCTTTTGGAATACTCCCGACTTTCTATTCTCCTATGCCATG ATTCCCACGTTTCCCCTCCTCTACTTTGCCTGGAAATTCACGCACAAGACACAAGTCCACAAGCCAGAACAGGTC GATCTCTTCAAGGGCCTGGCTGCCATTGATGAGTACGAGCGCCAGTATATACCTCAACCACCTCGTAATTACGCC GAGAAGGTGTTGGACACGGTTTTTGGATGA |
| Gene | >Ophcf2|06936 ATGGGCTCGACGGCCATCAACCCGCCGGCCTACTCGGCTCCCGGTCAAGACCACGGCGGCGCCCCGAAGGACGAG CGGCCGGCGCAGAGCGTACGCGAGTCTCTCTCCGGAGACGGTGCCGAGGCCGACGCCACCCATCGGAAGCTCAAG TCGCGGCACGTCCAGCTGTTGGGCATCGGCGGCACTGTTGGCACAGCTCTCTTCGTCCAAATTGGAAAGGGTCTC ATTGATGGCGGTCCGGGAAGCTTGTTCATCGCCTTTGCCTTTTGGTGCACCTTTATCCTGGCGGTGACGCAGTGC ATGGCTGAGATGGTCACTTACCTTCCCATCTCATCGCCCTTTATCCGCTTCGCTGGCCGCTACGTTGATGAGGCC TTTGGCTTTGCCGTCGGTTGGAACTTTTTCGTCTTCGAGGCTGCTCTGGTGCCGTTTGAGGTGGTAGCCTGCAAC CTCGTTATCCGGTTCTGGACCGACGCCATCCCGACAGCCGCCGTCATCGTCATCATCATCTCTCTGTACGCCCTT CTCAACCTTCTGACCGTCAGTTGGTTCGGTGAGAGCGAGTTCTGGGCGGCTGTCGGCAAGGTTCTTTTGGCCGTC GGCCTCATTGTCTTCACAGTCGTCGTCATGCTGGGAGGCAACCCGCGAGGGGACCGGTTCGGCTTCACCTTTTGG AACAAGCCGGGCGCCTTTGCCGAGCTCTACTATCCTGGTCCGCTCGGCCGGTGGCTGGGCTTCTTGCAGTGCCTC ATACAGGCTGCTTTCACTATCGCAGGCCCGGACTATGTCTCCATGACGGCTGGCGAGGCCCAGAACCCGAGAGTC GTCATGCCGCGTGCCTACGACGCCGTCTTTTACCGTCTCACGGCCTTCTTCGTCCTCGGCTCCCTTTGCGTCGGC ATCCTGGTGCCGTACGACGATCCCGAGATGCGGGCTGCCTTTGTCAACTCCGTCTCAGGAGCGGCCGCTTCTCCC TACGTCGTGGCCATGAACCGACTCGGCATCCGCGTCTTGCCGCACATCGTCAACGCCATGATCCTGACCTCGGCT TTTTCCGCTGGCAACTCGTACCTTTACTGCGCTTCGCGCTCGCTCTACGGATTGGCCCTCGAGGGTAAGGCTCCC AAGATCATGACCGTCTGCACCAAGAAGGGCGTGCCTGTCTACTGCGTCGCTTTTGTCCTCTTGTTTTCTCTTCTA GCATTTCTTCAGCTTCAAGCCAACTCGGCCGTCGTCCTCAGCTGGTTCGTCTCGCTCGTCACCGCTTCTCAGCTC ATAAACTTTGCCATGGTCTGCGTCACCTATCTCTTCTTTCACCGCGCCCTTAAGGCCCAGGGCATAGGCCGTCGT CATCTGCCTTACCGGGCGCGCTTCATGCCCTACGCCGCCTGGTACGGCCTGATCGGCACTGTCATCATGGCGTTT GTCGGCGGCTACAAGGTCTTTCTACCTTTACCGGGCTTTTGGAATACTCCCGACTTTCTATTCTCGTGAGATTGA CTTACTCCTTCAGTATTGACTTGACTGACATGTCCTCAAAGCTATGCCATGATTCCCACGTTTCCCCTCCTCTAC TTTGCCTGGAAATTCACGCACAAGACACAAGTCCACAAGCCAGAACAGGTCGATCTCTTCAAGGGCCTGGCTGCC ATTGATGAGTACGAGCGCCAGTATATACCTCAACCACCTCGGTATGCTCTGCCGGTGACTTTGTGATACTTGACC GCCGCTGACTCTGTCCTCCAGTAATTACGCCGAGAAGGTGTTGGACACGGTTTTTGGATGA |