Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|06921
Gene name
Location	scaffold_08:1408456..1409819
Strand	+
Gene length (bp)	1363
Transcript length (bp)	1305
Coding sequence length (bp)	1305
Protein length (aa)	435

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	12	34	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	126.50	71.49	181.50
Alive	In ants, during behavior modification	50.01	26.53	73.49
Dead	In ants, recently dead	53.02	29.65	76.40

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.778690	no
Dead	Fungus	0.000238	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|06921 MASNRSFYSTSLIVLLIAVSVSYLCGATFLRMFVVLGVFRTPGQTPAADLVAIPDTTYCEDLHYHKPSGFVFAAC EGETIRHSWFPPLSIFDDPARGYKGRGGVKVIDPTTLKAKTLRLDGFDGPFVTHGFDILDDPESQEGKHIYLFAV NHKPNTQRYEKRDESAPESHSVIEVFRHELGSDSAQHVRSVWHPLIKTPNDVYALSPSSFFVTNDHRYTKGVMRL VEESYFASKWTDTIFVQFTPSESAQDDSHGVQASVALQGLHNNNGLGHGKAPQDILVVSASTGQLHLGVHAVDAT TVTSRIRITESIDVDSTIDNPSYFSDPYANSTFDGSGFVLAGLSNGVNVLSNRRNPDAKDGVLIWMVSPEKGAGK DSSKWRKRLLFEDDGTRIRTASSAVLVAKDPAADSGRRRAQLFVSGFLSKSVVSCLVDL*
Coding	>Ophcf2\|06921 ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC CGAGGCGGTGTCAAGGTCATCGACCCAACAACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCC TTTGTCACGCACGGCTTCGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTC AACCATAAGCCAAACACACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTC TTTCGCCACGAGCTCGGCTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAAC GATGTATACGCCCTCTCGCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTG GTGGAAGAGTCGTACTTTGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAG GACGACAGTCACGGCGTTCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAG GCGCCGCAGGATATCCTCGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACG ACAGTCACGAGCCGGATCCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCC GACCCGTATGCTAACAGCACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTC AGTAACAGGCGGAACCCAGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAG GACTCCAGTAAGTGGCGCAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTT CTGGTGGCCAAGGACCCTGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAG AGCGTGGTGTCGTGCCTCGTTGACCTGTAA
Transcript	>Ophcf2\|06921 ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC CGAGGCGGTGTCAAGGTCATCGACCCAACAACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCC TTTGTCACGCACGGCTTCGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTC AACCATAAGCCAAACACACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTC TTTCGCCACGAGCTCGGCTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAAC GATGTATACGCCCTCTCGCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTG GTGGAAGAGTCGTACTTTGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAG GACGACAGTCACGGCGTTCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAG GCGCCGCAGGATATCCTCGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACG ACAGTCACGAGCCGGATCCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCC GACCCGTATGCTAACAGCACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTC AGTAACAGGCGGAACCCAGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAG GACTCCAGTAAGTGGCGCAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTT CTGGTGGCCAAGGACCCTGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAG AGCGTGGTGTCGTGCCTCGTTGACCTGTAA
Gene	>Ophcf2\|06921 ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC CGAGGCGGTGTCAAGGTCATCGACCCAACAGTCAGTCGTGTCTCACAATCCCCGCATGACCTGAAAGTTTGCTGA TTCCCGGTGTCAGACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCCTTTGTCACGCACGGCTT CGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTCAACCATAAGCCAAACAC ACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTCTTTCGCCACGAGCTCGG CTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAACGATGTATACGCCCTCTC GCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTGGTGGAAGAGTCGTACTT TGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAGGACGACAGTCACGGCGT TCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAGGCGCCGCAGGATATCCT CGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACGACAGTCACGAGCCGGAT CCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCCGACCCGTATGCTAACAG CACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTCAGTAACAGGCGGAACCC AGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAGGACTCCAGTAAGTGGCG CAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTTCTGGTGGCCAAGGACCC TGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAGAGCGTGGTGTCGTGCCT CGTTGACCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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