Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06921
Gene name
Locationscaffold_08:1408456..1409819
Strand+
Gene length (bp)1363
Transcript length (bp)1305
Coding sequence length (bp)1305
Protein length (aa) 435

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 126.50 71.49 181.50
Alive In ants, during behavior modification 50.01 26.53 73.49
Dead In ants, recently dead 53.02 29.65 76.40

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.778690 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06921
MASNRSFYSTSLIVLLIAVSVSYLCGATFLRMFVVLGVFRTPGQTPAADLVAIPDTTYCEDLHYHKPSGFVFAAC
EGETIRHSWFPPLSIFDDPARGYKGRGGVKVIDPTTLKAKTLRLDGFDGPFVTHGFDILDDPESQEGKHIYLFAV
NHKPNTQRYEKRDESAPESHSVIEVFRHELGSDSAQHVRSVWHPLIKTPNDVYALSPSSFFVTNDHRYTKGVMRL
VEESYFASKWTDTIFVQFTPSESAQDDSHGVQASVALQGLHNNNGLGHGKAPQDILVVSASTGQLHLGVHAVDAT
TVTSRIRITESIDVDSTIDNPSYFSDPYANSTFDGSGFVLAGLSNGVNVLSNRRNPDAKDGVLIWMVSPEKGAGK
DSSKWRKRLLFEDDGTRIRTASSAVLVAKDPAADSGRRRAQLFVSGFLSKSVVSCLVDL*
Coding >Ophcf2|06921
ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC
GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG
GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT
GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC
CGAGGCGGTGTCAAGGTCATCGACCCAACAACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCC
TTTGTCACGCACGGCTTCGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTC
AACCATAAGCCAAACACACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTC
TTTCGCCACGAGCTCGGCTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAAC
GATGTATACGCCCTCTCGCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTG
GTGGAAGAGTCGTACTTTGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAG
GACGACAGTCACGGCGTTCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAG
GCGCCGCAGGATATCCTCGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACG
ACAGTCACGAGCCGGATCCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCC
GACCCGTATGCTAACAGCACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTC
AGTAACAGGCGGAACCCAGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAG
GACTCCAGTAAGTGGCGCAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTT
CTGGTGGCCAAGGACCCTGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAG
AGCGTGGTGTCGTGCCTCGTTGACCTGTAA
Transcript >Ophcf2|06921
ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC
GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG
GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT
GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC
CGAGGCGGTGTCAAGGTCATCGACCCAACAACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCC
TTTGTCACGCACGGCTTCGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTC
AACCATAAGCCAAACACACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTC
TTTCGCCACGAGCTCGGCTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAAC
GATGTATACGCCCTCTCGCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTG
GTGGAAGAGTCGTACTTTGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAG
GACGACAGTCACGGCGTTCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAG
GCGCCGCAGGATATCCTCGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACG
ACAGTCACGAGCCGGATCCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCC
GACCCGTATGCTAACAGCACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTC
AGTAACAGGCGGAACCCAGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAG
GACTCCAGTAAGTGGCGCAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTT
CTGGTGGCCAAGGACCCTGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAG
AGCGTGGTGTCGTGCCTCGTTGACCTGTAA
Gene >Ophcf2|06921
ATGGCTTCCAATCGTTCCTTTTACTCGACGTCGTTGATCGTCCTGCTGATTGCAGTATCCGTCTCGTACCTATGC
GGCGCCACCTTTTTGCGCATGTTCGTGGTGTTGGGCGTCTTTCGGACCCCGGGGCAGACGCCAGCAGCCGACTTG
GTCGCCATTCCGGATACCACATACTGCGAGGATCTCCACTACCATAAACCAAGCGGCTTTGTCTTTGCAGCCTGT
GAGGGCGAGACAATTCGCCACTCCTGGTTTCCGCCTCTCAGCATCTTTGACGATCCTGCTCGGGGTTACAAGGGC
CGAGGCGGTGTCAAGGTCATCGACCCAACAGTCAGTCGTGTCTCACAATCCCCGCATGACCTGAAAGTTTGCTGA
TTCCCGGTGTCAGACGCTCAAGGCCAAGACGCTGCGACTCGACGGCTTTGATGGACCCTTTGTCACGCACGGCTT
CGACATCCTCGATGACCCCGAGTCGCAGGAAGGGAAACACATCTACCTCTTCGCCGTCAACCATAAGCCAAACAC
ACAACGCTATGAGAAGCGCGACGAGAGCGCTCCTGAAAGTCACTCTGTCATCGAAGTCTTTCGCCACGAGCTCGG
CTCCGACAGCGCGCAGCATGTTCGCTCCGTCTGGCATCCCCTCATAAAGACGCCCAACGATGTATACGCCCTCTC
GCCGTCTTCCTTTTTCGTTACCAACGATCATCGCTACACCAAAGGCGTCATGAGGCTGGTGGAAGAGTCGTACTT
TGCCTCCAAATGGACGGATACCATCTTTGTCCAGTTCACGCCGAGTGAATCTGCTCAGGACGACAGTCACGGCGT
TCAGGCCTCGGTCGCGCTTCAGGGCCTGCACAATAACAACGGTTTGGGTCATGGCAAGGCGCCGCAGGATATCCT
CGTCGTGAGCGCTTCGACCGGTCAGCTGCACCTGGGCGTCCACGCCGTTGACGCCACGACAGTCACGAGCCGGAT
CCGCATCACCGAGTCCATCGACGTCGACTCGACCATCGACAACCCGTCCTATTTTTCCGACCCGTATGCTAACAG
CACCTTTGACGGTAGCGGCTTCGTTCTGGCCGGCTTATCCAACGGGGTCAATGTCCTCAGTAACAGGCGGAACCC
AGACGCCAAAGACGGCGTCTTGATCTGGATGGTCAGCCCGGAAAAGGGAGCCGGCAAGGACTCCAGTAAGTGGCG
CAAACGACTGCTATTCGAGGATGACGGCACCCGCATCCGCACCGCCAGCAGCGCCGTTCTGGTGGCCAAGGACCC
TGCCGCCGACTCTGGCCGCCGTCGAGCGCAGCTGTTTGTTTCGGGCTTCTTGTCCAAGAGCGTGGTGTCGTGCCT
CGTTGACCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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