Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06884
Gene name
Locationscaffold_08:1318240..1319670
Strand-
Gene length (bp)1430
Transcript length (bp)1377
Coding sequence length (bp)1377
Protein length (aa) 459

Overview

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PFAM Domains

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular 0.1189 0.0618 0.85 0.4857 0.0576 0.0054 0.2175 0.092 0.1391 0.0012

SignalP

SignalP signal predicted Location Score
Yes 1 - 20 0.999753

Transmembrane Domains

Domain # Start End Length
1 435 457 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 2921.01 890.44 4951.58
Alive In ants, during behavior modification 841.15 171.01 1511.29
Dead In ants, recently dead 724.64 257.36 1191.93

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.649421 no
Dead Fungus 0.000238 yes

Orthologs

Orthofinder run ID4
Orthogroup6104
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|06884 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|5003
Ophiocordyceps kimflemingae Ophio5|4516
Ophiocordyceps subramaniannii Hirsu2|3506

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06884
MYRLTTSVIAGLAAVNGALAFGGPDACHQDGYPASGPNYPCNEVQEWNVRCNNIKNLKTHQACICEPWHKDNVEG
CSSCKLKHGIDGPQGIKYWEAVNDKALQGYCKLEKPDKKYPEFWAEVQNLAGPPPMHSNDGNLPNNVLGKDISVG
RYYTPKVPKPDVSKYSCNDTAPTGTAKVPEFSVVAVATQTATPAPSATAMAAPKYKSNNSSVVVEAKAAVSAKLS
LVSIGYKCDAKVNGREGVHWDCSSPYRINNPKIEAVAYAKIEASIAVNLLDASFCGCVPNQLITGENFKLENKIE
GRAGYTVLKPSKDNKEILRPRSPFPPAAVAKVEAKAEAHATVSGSSEAHAEAKASASVTIATQGDCKVYVPASSV
QNGKVIADGKPAALPHTVPKAPAPAPAPATTSAGIPAARPAGTGAPIVPTSPKVAPPADIISGAAAMTVPALALA
AGILVAAF*
Coding >Ophcf2|06884
ATGTACAGACTCACCACCTCCGTAATCGCCGGCCTGGCTGCCGTCAACGGTGCTCTCGCCTTTGGCGGTCCCGAT
GCCTGCCACCAGGACGGCTACCCGGCTTCGGGCCCCAACTACCCCTGCAACGAGGTTCAGGAGTGGAACGTCCGG
TGCAACAATATCAAGAACCTCAAGACGCATCAGGCCTGCATCTGCGAGCCCTGGCACAAGGATAACGTCGAGGGT
TGCAGCTCGTGCAAGCTCAAGCACGGCATCGACGGTCCCCAAGGCATCAAGTACTGGGAAGCCGTCAACGACAAG
GCCCTCCAAGGATACTGCAAGCTGGAGAAGCCCGACAAGAAATACCCCGAGTTCTGGGCAGAGGTGCAGAACCTG
GCCGGTCCGCCCCCGATGCACTCTAACGACGGCAACTTGCCCAACAACGTCCTCGGCAAAGACATCAGCGTCGGA
CGTTACTACACGCCCAAGGTCCCCAAGCCGGACGTGTCCAAGTACAGCTGCAACGACACCGCCCCGACCGGAACC
GCAAAGGTCCCCGAGTTCTCCGTCGTCGCCGTGGCCACCCAGACGGCGACTCCGGCCCCGTCGGCCACCGCCATG
GCCGCTCCCAAGTACAAGAGCAACAACTCGTCCGTGGTTGTAGAGGCCAAGGCCGCCGTCTCCGCCAAGCTCTCT
CTCGTCTCCATCGGATACAAGTGCGACGCCAAGGTCAACGGACGTGAAGGCGTTCACTGGGACTGTTCCAGCCCG
TACCGCATCAACAACCCCAAGATCGAGGCCGTGGCTTACGCCAAGATCGAGGCCAGTATCGCGGTCAACTTGCTG
GATGCCAGCTTCTGCGGCTGCGTTCCTAACCAGCTCATCACCGGCGAGAACTTCAAGCTCGAGAACAAGATCGAG
GGTCGTGCTGGATACACGGTCCTGAAGCCTTCCAAGGATAACAAGGAGATTCTCCGCCCCCGGTCTCCCTTCCCC
CCGGCCGCCGTTGCCAAGGTCGAGGCCAAGGCCGAGGCTCATGCCACCGTCTCCGGCTCTTCCGAAGCCCACGCC
GAGGCCAAAGCCTCTGCTTCCGTCACCATCGCCACTCAGGGAGACTGCAAGGTCTACGTCCCGGCTTCCAGCGTC
CAGAACGGCAAAGTCATCGCCGACGGTAAACCCGCCGCTCTCCCGCATACCGTTCCCAAGGCCCCGGCTCCGGCC
CCGGCTCCGGCCACTACCTCCGCCGGCATCCCGGCTGCTCGCCCGGCCGGCACCGGCGCTCCTATCGTGCCCACC
AGCCCCAAGGTTGCGCCCCCTGCCGACATCATCAGCGGCGCTGCTGCCATGACGGTGCCTGCTCTGGCTCTTGCC
GCTGGCATCTTGGTCGCTGCCTTTTAA
Transcript >Ophcf2|06884
ATGTACAGACTCACCACCTCCGTAATCGCCGGCCTGGCTGCCGTCAACGGTGCTCTCGCCTTTGGCGGTCCCGAT
GCCTGCCACCAGGACGGCTACCCGGCTTCGGGCCCCAACTACCCCTGCAACGAGGTTCAGGAGTGGAACGTCCGG
TGCAACAATATCAAGAACCTCAAGACGCATCAGGCCTGCATCTGCGAGCCCTGGCACAAGGATAACGTCGAGGGT
TGCAGCTCGTGCAAGCTCAAGCACGGCATCGACGGTCCCCAAGGCATCAAGTACTGGGAAGCCGTCAACGACAAG
GCCCTCCAAGGATACTGCAAGCTGGAGAAGCCCGACAAGAAATACCCCGAGTTCTGGGCAGAGGTGCAGAACCTG
GCCGGTCCGCCCCCGATGCACTCTAACGACGGCAACTTGCCCAACAACGTCCTCGGCAAAGACATCAGCGTCGGA
CGTTACTACACGCCCAAGGTCCCCAAGCCGGACGTGTCCAAGTACAGCTGCAACGACACCGCCCCGACCGGAACC
GCAAAGGTCCCCGAGTTCTCCGTCGTCGCCGTGGCCACCCAGACGGCGACTCCGGCCCCGTCGGCCACCGCCATG
GCCGCTCCCAAGTACAAGAGCAACAACTCGTCCGTGGTTGTAGAGGCCAAGGCCGCCGTCTCCGCCAAGCTCTCT
CTCGTCTCCATCGGATACAAGTGCGACGCCAAGGTCAACGGACGTGAAGGCGTTCACTGGGACTGTTCCAGCCCG
TACCGCATCAACAACCCCAAGATCGAGGCCGTGGCTTACGCCAAGATCGAGGCCAGTATCGCGGTCAACTTGCTG
GATGCCAGCTTCTGCGGCTGCGTTCCTAACCAGCTCATCACCGGCGAGAACTTCAAGCTCGAGAACAAGATCGAG
GGTCGTGCTGGATACACGGTCCTGAAGCCTTCCAAGGATAACAAGGAGATTCTCCGCCCCCGGTCTCCCTTCCCC
CCGGCCGCCGTTGCCAAGGTCGAGGCCAAGGCCGAGGCTCATGCCACCGTCTCCGGCTCTTCCGAAGCCCACGCC
GAGGCCAAAGCCTCTGCTTCCGTCACCATCGCCACTCAGGGAGACTGCAAGGTCTACGTCCCGGCTTCCAGCGTC
CAGAACGGCAAAGTCATCGCCGACGGTAAACCCGCCGCTCTCCCGCATACCGTTCCCAAGGCCCCGGCTCCGGCC
CCGGCTCCGGCCACTACCTCCGCCGGCATCCCGGCTGCTCGCCCGGCCGGCACCGGCGCTCCTATCGTGCCCACC
AGCCCCAAGGTTGCGCCCCCTGCCGACATCATCAGCGGCGCTGCTGCCATGACGGTGCCTGCTCTGGCTCTTGCC
GCTGGCATCTTGGTCGCTGCCTTTTAA
Gene >Ophcf2|06884
ATGTACAGACTCACCACCTCCGTAATCGCCGGCCTGGCTGCCGTCAACGGTGCTCTCGCCTTTGGCGGTCCCGAT
GCCTGCCACCAGGACGGCTACCCGGCTTCGGGCCCCAACTACCCCTGCAACGAGGTTCAGGAGTGGAACGTCCGG
TGCAACAATATCAAGAACCTCAAGACGCATCAGGCCTGCATCTGCGAGCCCTGGCACAAGGATAACGTCGAGGGT
TGCAGCTCGTGCAAGCTCAAGCACGGCATCGACGGTCCCCAAGGCATCAAGTACTGGGAAGCCGTCAACGACAAG
GCCCTCCAAGGATACTGCAAGCTGGAGAAGCCCGACAAGAAATACCCCGAGTTCTGGGCAGAGGTGCAGAACCTG
GCCGGTCCGCCCCCGATGCACTCTAACGACGGCAACTTGCCCAACAACGTCCTCGGCAAAGACATCAGCGTCGGA
CGTTACTACACGCCCAAGGTCCCCAAGCCGGACGTGTCCAAGTACAGCTGCAACGACACCGCCCCGACCGGAACC
GCAAAGGTCCCCGAGTTCTCCGTCGTCGCCGTGGCCACCCAGACGGCGACTCCGGCCCCGTCGGCCACCGCCATG
GCCGCTCCCAAGTACAAGAGCAACAACTCGTCCGTGGTTGTAGAGGCCAAGGCCGCCGTCTCCGCCAAGCTCTCT
CTCGTCTCCATCGGATACAAGTGCGACGCCAAGGTCAACGGACGTGAAGGCGTTCACTGGGACTGTTCCAGCCCG
TACCGCATCAACAACCCCAAGATCGAGGCCGTGGCTTACGCCAAGATCGAGGCCAGTATCGCGGTCAACTTGCTG
GATGCCAGCTTCTGCGGCTGCGTTCCTAACCAGCTCATCACCGGCGAGAACTTCAAGCTCGAGAACAAGATCGAG
GGTCGTGCTGGATACACGGTCCTGAAGCCTTCCAAGGATAACAAGGAGATTGTTGTCGACAAGCAGGTCCAGGCC
GATAAGCCCCGTCCTGGTGCCGGCCCCAGCTCCGCCCCCGGTCTCCCTTCCCCCCGGCCGCCGTTGCCAAGGTCG
AGGCCAAGGCCGAGGCTCATGCCACCGTCTCCGGCTCTTCCGAAGCCCACGCCGAGGCCAAAGCCTCTGCTTCCG
TCACCATCGCCACTCAGGGAGACTGCAAGGTCTACGTCCCGGCTTCCAGCGTCCAGAACGGCAAAGTCATCGCCG
ACGGTAAACCCGCCGCTCTCCCGCATACCGTTCCCAAGGCCCCGGCTCCGGCCCCGGCTCCGGCCACTACCTCCG
CCGGCATCCCGGCTGCTCGCCCGGCCGGCACCGGCGCTCCTATCGTGCCCACCAGCCCCAAGGTTGCGCCCCCTG
CCGACATCATCAGCGGCGCTGCTGCCATGACGGTGCCTGCTCTGGCTCTTGCCGCTGGCATCTTGGTCGCTGCCT
TTTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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