Protein ID | Ophcf2|06881 |
Gene name | |
Location | scaffold_08:1310987..1312525 |
Strand | - |
Gene length (bp) | 1538 |
Transcript length (bp) | 1374 |
Coding sequence length (bp) | 1374 |
Protein length (aa) | 458 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03663 | Glyco_hydro_76 | Glycosyl hydrolase family 76 | 2.0E-152 | 31 | 401 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0756 | 0.0632 | 0.5111 | 0.4502 | 0.1299 | 0.0211 | 0.3372 | 0.3075 | 0.3312 | 0.0083 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.99966 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 433 | 455 | 22 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GH76 | 1.2E-109 | 26 | 401 |
Orthofinder run ID | 4 |
Orthogroup | 7 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|06881 MRSVCAAALLSVVGLVSAQQSQFSVQSEDAIKRTASTIAWDMLQYYKGNQTGQTPGILPGPPPAGDYYWWEGGAM WGTLIDYWAWTGDESYNKEIMEALQWQVGVNNDYMPHNVTASLGNDDQGFWGMSAMLAAENKFPDPPSDKPQWLA LAQAVFNTQASPDRHDSTCGGGLRWQIPFANNGYNYKNSIANGCFFNLGARLARYTNNATYSDWAIKTWDWMEKI GFIDPETYAIYDGANIGTECKDINRAQFSYNNGVFAQGAAFMYNYTNGDQKWKERTARLVDRGLKTFFPNGIAVE PSCENINTCTTDMITFKGFVHRWYSVITQVAPFTADQIKPILKKSSEAAVKQCTGGALGRQCGFKWATGTYDGKT GAGQEMAALGAVSSLLIDRAKPPVTAKSGGTSEGNPDAGGGGDDFRKHSRPVTAGDKAGASILTMLVLGSACGVF GWMSFGV* |
Coding | >Ophcf2|06881 ATGAGGTCCGTCTGCGCTGCCGCGCTGCTGTCGGTCGTCGGCCTCGTCAGCGCCCAGCAGTCGCAATTTTCTGTC CAGTCCGAAGATGCCATAAAGCGCACCGCCAGCACCATCGCCTGGGACATGCTGCAATACTACAAGGGAAACCAA ACGGGTCAGACGCCCGGTATCCTCCCCGGCCCTCCGCCGGCCGGCGACTACTACTGGTGGGAGGGCGGTGCCATG TGGGGGACGCTGATCGACTACTGGGCATGGACGGGCGACGAGTCGTACAACAAGGAGATCATGGAGGCTCTGCAA TGGCAGGTCGGCGTTAATAATGATTATATGCCGCACAACGTCACCGCCTCGCTCGGCAATGACGATCAAGGCTTC TGGGGCATGTCGGCCATGTTGGCGGCCGAAAACAAGTTTCCCGACCCGCCGTCGGACAAGCCGCAATGGCTGGCG TTGGCCCAGGCCGTCTTCAACACACAGGCGAGCCCTGATCGGCACGATTCGACTTGCGGCGGTGGTCTGCGGTGG CAGATTCCGTTTGCCAACAACGGTTACAACTACAAGAACAGTATCGCCAACGGCTGCTTCTTTAACCTCGGCGCG CGCCTGGCCCGCTATACCAATAACGCGACCTACTCCGACTGGGCCATCAAGACGTGGGACTGGATGGAGAAGATC GGCTTCATCGATCCAGAGACGTATGCCATCTACGATGGCGCCAACATCGGGACCGAATGCAAGGACATCAACAGG GCGCAGTTCTCGTACAACAACGGCGTCTTCGCCCAAGGCGCAGCCTTTATGTACAACTATACAAATGGAGATCAG AAGTGGAAAGAGAGGACAGCCAGGTTGGTGGACCGCGGGCTCAAGACGTTTTTCCCCAACGGCATCGCGGTAGAG CCGTCGTGCGAGAACATAAACACGTGCACGACGGACATGATTACCTTCAAGGGCTTCGTTCACCGGTGGTACTCG GTCATCACCCAGGTAGCGCCATTCACGGCCGATCAGATCAAGCCCATCCTCAAGAAGTCGTCGGAGGCGGCCGTC AAGCAGTGCACGGGAGGGGCGCTGGGCCGGCAGTGCGGCTTCAAGTGGGCGACGGGCACGTACGACGGCAAGACG GGTGCCGGTCAGGAGATGGCCGCTCTCGGGGCCGTATCATCGCTACTCATCGACCGGGCCAAGCCGCCCGTGACG GCCAAGTCGGGCGGCACATCCGAGGGCAACCCGGACGCGGGCGGCGGCGGCGACGATTTCCGGAAGCACAGCCGG CCCGTTACGGCGGGTGACAAGGCGGGCGCCAGCATCCTGACAATGCTGGTACTGGGATCGGCCTGCGGTGTCTTT GGCTGGATGAGCTTTGGGGTTTGA |
Transcript | >Ophcf2|06881 ATGAGGTCCGTCTGCGCTGCCGCGCTGCTGTCGGTCGTCGGCCTCGTCAGCGCCCAGCAGTCGCAATTTTCTGTC CAGTCCGAAGATGCCATAAAGCGCACCGCCAGCACCATCGCCTGGGACATGCTGCAATACTACAAGGGAAACCAA ACGGGTCAGACGCCCGGTATCCTCCCCGGCCCTCCGCCGGCCGGCGACTACTACTGGTGGGAGGGCGGTGCCATG TGGGGGACGCTGATCGACTACTGGGCATGGACGGGCGACGAGTCGTACAACAAGGAGATCATGGAGGCTCTGCAA TGGCAGGTCGGCGTTAATAATGATTATATGCCGCACAACGTCACCGCCTCGCTCGGCAATGACGATCAAGGCTTC TGGGGCATGTCGGCCATGTTGGCGGCCGAAAACAAGTTTCCCGACCCGCCGTCGGACAAGCCGCAATGGCTGGCG TTGGCCCAGGCCGTCTTCAACACACAGGCGAGCCCTGATCGGCACGATTCGACTTGCGGCGGTGGTCTGCGGTGG CAGATTCCGTTTGCCAACAACGGTTACAACTACAAGAACAGTATCGCCAACGGCTGCTTCTTTAACCTCGGCGCG CGCCTGGCCCGCTATACCAATAACGCGACCTACTCCGACTGGGCCATCAAGACGTGGGACTGGATGGAGAAGATC GGCTTCATCGATCCAGAGACGTATGCCATCTACGATGGCGCCAACATCGGGACCGAATGCAAGGACATCAACAGG GCGCAGTTCTCGTACAACAACGGCGTCTTCGCCCAAGGCGCAGCCTTTATGTACAACTATACAAATGGAGATCAG AAGTGGAAAGAGAGGACAGCCAGGTTGGTGGACCGCGGGCTCAAGACGTTTTTCCCCAACGGCATCGCGGTAGAG CCGTCGTGCGAGAACATAAACACGTGCACGACGGACATGATTACCTTCAAGGGCTTCGTTCACCGGTGGTACTCG GTCATCACCCAGGTAGCGCCATTCACGGCCGATCAGATCAAGCCCATCCTCAAGAAGTCGTCGGAGGCGGCCGTC AAGCAGTGCACGGGAGGGGCGCTGGGCCGGCAGTGCGGCTTCAAGTGGGCGACGGGCACGTACGACGGCAAGACG GGTGCCGGTCAGGAGATGGCCGCTCTCGGGGCCGTATCATCGCTACTCATCGACCGGGCCAAGCCGCCCGTGACG GCCAAGTCGGGCGGCACATCCGAGGGCAACCCGGACGCGGGCGGCGGCGGCGACGATTTCCGGAAGCACAGCCGG CCCGTTACGGCGGGTGACAAGGCGGGCGCCAGCATCCTGACAATGCTGGTACTGGGATCGGCCTGCGGTGTCTTT GGCTGGATGAGCTTTGGGGTTTGA |
Gene | >Ophcf2|06881 ATGAGGTCCGTCTGCGCTGCCGCGCTGCTGTCGGTCGTCGGCCTCGTCAGCGCCCAGCAGTCGCAATTTTCTGTC CAGTCCGAAGGTAAATGTCCCTTTACTCCCATTTCCCTGCTATTTCTAACGACGGACAGATGCCATAAAGCGCAC CGCCAGCACCATCGCCTGGGACATGCTGCAATACTACAAGGGAAACCAAACGGGTCAGACGCCCGGTATCCTCCC CGGCCCTCCGCCGGCCGGCGACTACTACTGGTGGGAGGGCGGTGCCATGTGGGGGACGCTGATCGACTACTGGGC ATGGACGGGCGACGAGTCGTACAACAAGGAGATCATGGAGGCTCTGCAATGGCAGGTCGGCGTTAATAATGATTA TATGCCGCACAACGTCACCGCCTCGCTCGGCAATGACGATCAAGGCTTCTGGGGCATGTCGGCCATGTTGGCGGC CGAAAACAAGTTTCCCGACCCGCCGTCGGACAAGCCGCAATGGCTGGCGTTGGCCCAGGCCGTCTTCAACACACA GGCGAGCCCTGATCGGCACGATTCGACTTGCGGCGGTGGTCTGCGGTGGCAGATTCCGTTTGCCAACAACGGTTA CAACTACAAGAACAGTACGTTTGTGCTAATGCTCACCGTTGAGACTTGACCCCCACTCACCTCTGCTGCAGGTAT CGCCAACGGCTGCTTCTTTAACCTCGGCGCGCGCCTGGCCCGCTATACCAATAACGCGACCTACTCCGACTGGGC CATCAAGACGTGGGACTGGATGGAGAAGATCGGCTTCATCGATCCAGAGACGTATGCCATCTACGATGGCGCCAA CATCGGGACCGAATGCAAGGACATCAACAGGGCGCAGTTCTCGTACAACAACGGCGTCTTCGCCCAAGGCGCAGC CTTTATGTACAACTATGTGCGTCATCCGTCTCCCCCGTATGACGTATCTCCGTGAGAGCTGACGCGGGTGACAGA CAAATGGAGATCAGAAGTGGAAAGAGAGGACAGCCAGGTTGGTGGACCGCGGGCTCAAGACGTTTTTCCCCAACG GCATCGCGGTAGAGCCGTCGTGCGAGAACATAAACACGTGCACGACGGACATGATTACCTTCAAGGGCTTCGTTC ACCGGTGGTACTCGGTCATCACCCAGGTAGCGCCATTCACGGCCGATCAGATCAAGCCCATCCTCAAGAAGTCGT CGGAGGCGGCCGTCAAGCAGTGCACGGGAGGGGCGCTGGGCCGGCAGTGCGGCTTCAAGTGGGCGACGGGCACGT ACGACGGCAAGACGGGTGCCGGTCAGGAGATGGCCGCTCTCGGGGCCGTATCATCGCTACTCATCGACCGGGCCA AGCCGCCCGTGACGGCCAAGTCGGGCGGCACATCCGAGGGCAACCCGGACGCGGGCGGCGGCGGCGACGATTTCC GGAAGCACAGCCGGCCCGTTACGGCGGGTGACAAGGCGGGCGCCAGCATCCTGACAATGCTGGTACTGGGATCGG CCTGCGGTGTCTTTGGCTGGATGAGCTTTGGGGTTTGA |