© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06873 |
| Gene name | |
| Location | scaffold_08:1283017..1284366 |
| Strand | + |
| Gene length (bp) | 1349 |
| Transcript length (bp) | 1296 |
| Coding sequence length (bp) | 1296 |
| Protein length (aa) | 432 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08426 | ICE2 | ICE2 | 3.1E-152 | 7 | 420 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
| 2 | 34 | 53 | 19 |
| 3 | 66 | 88 | 22 |
| 4 | 139 | 161 | 22 |
| 5 | 174 | 196 | 22 |
| 6 | 206 | 225 | 19 |
| 7 | 232 | 249 | 17 |
| 8 | 302 | 324 | 22 |
| 9 | 358 | 380 | 22 |
| 10 | 400 | 422 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 70.88 | 40.49 | 101.26 |
| Alive | In ants, during behavior modification | 65.40 | 34.75 | 96.04 |
| Dead | In ants, recently dead | 61.39 | 34.64 | 88.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.728463 | no |
| Alive | Dead | 0.762704 | no |
| Dead | Fungus | 0.486986 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06873 MWWLFSILLGFVFLLSIVLSIPVAFDVGGRDSGLAYSLSLFIYYLVYSAIRIATSDGSRVGRSVSAIVRLSQWIV IPALMIWALGQFAVDAGSTHWVERTVGGVFRSKSTTWTGWLFGKDGVLEVVMLGTWDGALKYSGPVFQLLEGFCT LLVIQAAGQITRWLVNRGRSDTWLILLLAFSGSVMASSVYFLWRVVQFPQIGNLDATLIGIAMTTAVFLCAYGIG SGRGNPVESSLLFAYVVLCVYQIFTDYQPSDGTGQGDDQTAAQPDIPPLPPIIMASYSTLLHMVGSLPSALHSSL ALLYAAFQTITPSVIISLTYRLLVLYSATRIIPSVRDLGARALMQEPDFDDSETANKVLGLLSYFSPSILVAVYT SLLLQHFSTNGGPDGWTLRGGDVGGGTWRWVNVGLTMFLYGVELYLMDEQEHWKTD* |
| Coding | >Ophcf2|06873 ATGTGGTGGCTATTCAGCATCCTGCTCGGCTTCGTCTTCCTCCTCAGCATCGTCCTCTCCATACCCGTTGCCTTT GACGTTGGCGGTCGCGACAGCGGGCTTGCCTACAGCCTATCCCTCTTCATATACTACCTCGTCTACTCGGCCATC CGCATCGCCACCTCGGACGGGTCCCGCGTCGGACGGTCCGTGTCTGCCATCGTTCGCCTATCGCAATGGATCGTC ATCCCGGCCCTGATGATATGGGCTCTTGGCCAGTTCGCCGTCGATGCGGGGAGCACTCACTGGGTTGAGAGGACC GTCGGAGGCGTCTTTCGTTCCAAGAGCACCACCTGGACCGGCTGGCTGTTTGGTAAGGACGGCGTGCTCGAGGTG GTCATGCTGGGCACCTGGGACGGCGCACTCAAGTACTCGGGGCCAGTCTTTCAGCTGCTCGAAGGCTTCTGCACC CTGCTGGTAATCCAGGCCGCCGGACAGATAACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACCTGGCTGATT CTTCTCCTCGCCTTTTCCGGCTCCGTCATGGCCAGCTCCGTCTACTTCCTCTGGCGCGTTGTCCAGTTTCCGCAG ATTGGCAATCTCGACGCAACCCTCATCGGCATCGCCATGACGACGGCCGTCTTCCTCTGTGCCTACGGAATCGGC AGCGGGCGCGGCAACCCCGTGGAGAGCTCGCTGCTGTTTGCCTACGTCGTCCTCTGCGTCTACCAAATCTTCACC GACTACCAACCGTCGGACGGGACCGGACAGGGCGATGACCAGACGGCGGCGCAACCCGACATCCCGCCGCTGCCG CCCATCATCATGGCCTCTTACTCGACGCTGCTGCACATGGTCGGCTCGCTGCCGTCGGCACTGCACTCGTCGCTG GCGCTGCTGTACGCCGCGTTTCAGACCATTACGCCGTCCGTCATCATTTCTCTCACGTATCGGCTCCTGGTCTTG TACTCGGCCACGCGCATCATCCCTTCCGTCAGGGACCTCGGAGCACGGGCGCTGATGCAAGAGCCGGACTTTGAT GACTCGGAAACGGCGAACAAGGTGCTCGGCCTCTTGAGCTATTTCTCGCCCTCGATCCTGGTGGCCGTCTATACG AGCCTGCTACTGCAGCATTTCTCGACAAACGGCGGGCCAGATGGATGGACGCTTCGGGGCGGCGACGTCGGAGGC GGCACGTGGCGTTGGGTCAACGTCGGCCTGACCATGTTCCTCTACGGCGTCGAGCTTTACCTGATGGACGAGCAG GAACACTGGAAGACGGATTAA |
| Transcript | >Ophcf2|06873 ATGTGGTGGCTATTCAGCATCCTGCTCGGCTTCGTCTTCCTCCTCAGCATCGTCCTCTCCATACCCGTTGCCTTT GACGTTGGCGGTCGCGACAGCGGGCTTGCCTACAGCCTATCCCTCTTCATATACTACCTCGTCTACTCGGCCATC CGCATCGCCACCTCGGACGGGTCCCGCGTCGGACGGTCCGTGTCTGCCATCGTTCGCCTATCGCAATGGATCGTC ATCCCGGCCCTGATGATATGGGCTCTTGGCCAGTTCGCCGTCGATGCGGGGAGCACTCACTGGGTTGAGAGGACC GTCGGAGGCGTCTTTCGTTCCAAGAGCACCACCTGGACCGGCTGGCTGTTTGGTAAGGACGGCGTGCTCGAGGTG GTCATGCTGGGCACCTGGGACGGCGCACTCAAGTACTCGGGGCCAGTCTTTCAGCTGCTCGAAGGCTTCTGCACC CTGCTGGTAATCCAGGCCGCCGGACAGATAACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACCTGGCTGATT CTTCTCCTCGCCTTTTCCGGCTCCGTCATGGCCAGCTCCGTCTACTTCCTCTGGCGCGTTGTCCAGTTTCCGCAG ATTGGCAATCTCGACGCAACCCTCATCGGCATCGCCATGACGACGGCCGTCTTCCTCTGTGCCTACGGAATCGGC AGCGGGCGCGGCAACCCCGTGGAGAGCTCGCTGCTGTTTGCCTACGTCGTCCTCTGCGTCTACCAAATCTTCACC GACTACCAACCGTCGGACGGGACCGGACAGGGCGATGACCAGACGGCGGCGCAACCCGACATCCCGCCGCTGCCG CCCATCATCATGGCCTCTTACTCGACGCTGCTGCACATGGTCGGCTCGCTGCCGTCGGCACTGCACTCGTCGCTG GCGCTGCTGTACGCCGCGTTTCAGACCATTACGCCGTCCGTCATCATTTCTCTCACGTATCGGCTCCTGGTCTTG TACTCGGCCACGCGCATCATCCCTTCCGTCAGGGACCTCGGAGCACGGGCGCTGATGCAAGAGCCGGACTTTGAT GACTCGGAAACGGCGAACAAGGTGCTCGGCCTCTTGAGCTATTTCTCGCCCTCGATCCTGGTGGCCGTCTATACG AGCCTGCTACTGCAGCATTTCTCGACAAACGGCGGGCCAGATGGATGGACGCTTCGGGGCGGCGACGTCGGAGGC GGCACGTGGCGTTGGGTCAACGTCGGCCTGACCATGTTCCTCTACGGCGTCGAGCTTTACCTGATGGACGAGCAG GAACACTGGAAGACGGATTAA |
| Gene | >Ophcf2|06873 ATGTGGTGGCTATTCAGCATCCTGCTCGGCTTCGTCTTCCTCCTCAGCATCGTCCTCTCCATACCCGTTGCCTTT GACGTTGGCGGTCGCGACAGCGGGCTTGCCTACAGCCTATCCCTCTTCATATACTACCTCGTCTACTCGGCCATC CGCATCGCCACCTCGGACGGGTCCCGCGTCGGACGGTCCGTGTCTGCCATCGTTCGCCTATCGCAATGGATCGTC ATCCCGGCCCTGATGATATGGGCTCTTGGCCAGTTCGCCGTCGATGCGGGGAGCACTCACTGGGTTGAGAGGACC GTCGGAGGCGTCTTTCGTTCCAAGAGCACCACCTGGACCGGCTGGCTGTTTGGTAAGGACGGCGTGCTCGAGGTG GTCATGCTGGGCACCTGGGACGGCGCACTCAAGTACTCGGGGCCAGTCTTTCAGCTGCTCGAAGGCTTCTGCACC CTGCTGGTAATCCAGGCCGCCGGACAGATAACCCGCTGGCTCGTCAACAGGGGGAGGAGTGACACCTGGCTGGTG AGTCGACGACTTGTTCCCATAATTCGAAGCTGACGGAATCGCATCACCAGATTCTTCTCCTCGCCTTTTCCGGCT CCGTCATGGCCAGCTCCGTCTACTTCCTCTGGCGCGTTGTCCAGTTTCCGCAGATTGGCAATCTCGACGCAACCC TCATCGGCATCGCCATGACGACGGCCGTCTTCCTCTGTGCCTACGGAATCGGCAGCGGGCGCGGCAACCCCGTGG AGAGCTCGCTGCTGTTTGCCTACGTCGTCCTCTGCGTCTACCAAATCTTCACCGACTACCAACCGTCGGACGGGA CCGGACAGGGCGATGACCAGACGGCGGCGCAACCCGACATCCCGCCGCTGCCGCCCATCATCATGGCCTCTTACT CGACGCTGCTGCACATGGTCGGCTCGCTGCCGTCGGCACTGCACTCGTCGCTGGCGCTGCTGTACGCCGCGTTTC AGACCATTACGCCGTCCGTCATCATTTCTCTCACGTATCGGCTCCTGGTCTTGTACTCGGCCACGCGCATCATCC CTTCCGTCAGGGACCTCGGAGCACGGGCGCTGATGCAAGAGCCGGACTTTGATGACTCGGAAACGGCGAACAAGG TGCTCGGCCTCTTGAGCTATTTCTCGCCCTCGATCCTGGTGGCCGTCTATACGAGCCTGCTACTGCAGCATTTCT CGACAAACGGCGGGCCAGATGGATGGACGCTTCGGGGCGGCGACGTCGGAGGCGGCACGTGGCGTTGGGTCAACG TCGGCCTGACCATGTTCCTCTACGGCGTCGAGCTTTACCTGATGGACGAGCAGGAACACTGGAAGACGGATTAA |