Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06870
Gene name
Locationscaffold_08:1275002..1276140
Strand+
Gene length (bp)1138
Transcript length (bp)849
Coding sequence length (bp)849
Protein length (aa) 283

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00635 Motile_Sperm MSP (Major sperm protein) domain 1.1E-23 3 94

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

Domain # Start End Length
1 262 281 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06870
MSVDIEPQDLNFRRPFTVEVSQILTIKNPTTTPLAFKVKTTAPKQYCVRPNAGRIEPGQRFDVTVLLQAMRTDPP
LDAKCRDKFLVQSAPITADKEFASIALVLESTEKGRIQERKIRVNWLPAAGSDHGASVPQTGTVTPNRQSMVNGR
NVSDTPTSRTYSSPRGTTDSNPPPSYSAESSFDNVDAKSERPKSAVSQAATTVSESAQSTYEELKAKLAQAEAQI
VMLKDNTLRQRGSKAGVSESTTTSGPVAQAVKQADGVPVQVVAILCLLSFLLAYFFF*
Coding >Ophcf2|06870
ATGTCGGTTGACATCGAGCCTCAGGACTTGAACTTTCGCCGCCCCTTTACTGTCGAGGTGTCGCAGATCTTGACA
ATCAAGAACCCGACCACGACGCCTCTCGCCTTCAAGGTCAAGACGACTGCTCCGAAACAATACTGCGTTCGACCG
AATGCGGGCCGCATCGAGCCGGGCCAGAGGTTCGATGTCACGGTTCTTCTCCAGGCCATGAGGACGGATCCTCCG
CTCGACGCAAAATGTCGCGACAAGTTTCTCGTTCAGTCGGCGCCGATTACGGCCGACAAAGAGTTTGCGAGCATT
GCTCTGGTGCTCGAGTCGACGGAAAAGGGGCGGATCCAAGAGCGCAAAATCCGTGTCAACTGGCTGCCTGCCGCC
GGCTCCGATCACGGCGCTTCCGTCCCTCAGACCGGGACCGTGACTCCAAACAGGCAGTCGATGGTGAATGGGCGA
AACGTCAGCGATACGCCCACGTCGCGCACCTACTCGTCCCCTCGAGGCACGACGGACTCGAATCCTCCTCCTTCC
TACTCGGCCGAGTCTTCCTTCGATAACGTAGACGCAAAGTCGGAGCGTCCCAAGTCGGCCGTTTCGCAAGCGGCT
ACGACGGTGTCCGAATCGGCTCAGTCGACGTACGAGGAGCTCAAGGCCAAGCTGGCCCAGGCCGAGGCCCAGATC
GTGATGCTCAAGGACAACACTCTCCGTCAGCGCGGTTCCAAGGCCGGCGTGAGCGAGAGCACCACGACGAGCGGC
CCCGTGGCGCAGGCCGTCAAGCAGGCGGACGGTGTGCCGGTGCAGGTGGTGGCCATCCTCTGTCTACTGAGCTTC
CTACTCGCCTACTTCTTCTTCTAG
Transcript >Ophcf2|06870
ATGTCGGTTGACATCGAGCCTCAGGACTTGAACTTTCGCCGCCCCTTTACTGTCGAGGTGTCGCAGATCTTGACA
ATCAAGAACCCGACCACGACGCCTCTCGCCTTCAAGGTCAAGACGACTGCTCCGAAACAATACTGCGTTCGACCG
AATGCGGGCCGCATCGAGCCGGGCCAGAGGTTCGATGTCACGGTTCTTCTCCAGGCCATGAGGACGGATCCTCCG
CTCGACGCAAAATGTCGCGACAAGTTTCTCGTTCAGTCGGCGCCGATTACGGCCGACAAAGAGTTTGCGAGCATT
GCTCTGGTGCTCGAGTCGACGGAAAAGGGGCGGATCCAAGAGCGCAAAATCCGTGTCAACTGGCTGCCTGCCGCC
GGCTCCGATCACGGCGCTTCCGTCCCTCAGACCGGGACCGTGACTCCAAACAGGCAGTCGATGGTGAATGGGCGA
AACGTCAGCGATACGCCCACGTCGCGCACCTACTCGTCCCCTCGAGGCACGACGGACTCGAATCCTCCTCCTTCC
TACTCGGCCGAGTCTTCCTTCGATAACGTAGACGCAAAGTCGGAGCGTCCCAAGTCGGCCGTTTCGCAAGCGGCT
ACGACGGTGTCCGAATCGGCTCAGTCGACGTACGAGGAGCTCAAGGCCAAGCTGGCCCAGGCCGAGGCCCAGATC
GTGATGCTCAAGGACAACACTCTCCGTCAGCGCGGTTCCAAGGCCGGCGTGAGCGAGAGCACCACGACGAGCGGC
CCCGTGGCGCAGGCCGTCAAGCAGGCGGACGGTGTGCCGGTGCAGGTGGTGGCCATCCTCTGTCTACTGAGCTTC
CTACTCGCCTACTTCTTCTTCTAG
Gene >Ophcf2|06870
ATGTCGGTTGACATCGAGCCTCAGGACTTGAACTTTCGCCGTGAGTCTCATCGCTTGGGGCAGCCCATTGGCGCG
TTCTGATCAACTATTAGGCCCCTTTACTGTCGAGGTGTCGCAGATCTTGACAATCAAGAACCCGACCACGACGCC
TCTCGCCTTCAAGGTATGCCTCTTCTGGTCCCGTTAATGTTGTGACTCGCTAACTCATCTCAGGTCAAGACGACT
GCTCCGAAACAGTTGGTCCATCTCTTCTCCTTCCTCGATTGCCTTCTGACGTCTCAAGATACTGCGTTCGACCGA
ATGCGGGCCGCATCGAGCCGGGCCAGAGGTTCGATGTCACGGGTACGCCATTCGCCTTTCGTTGACGTTCCGAGC
TGATGTGGCAGTAGTTCTTCTCCAGGCCATGAGGACGGATCCTCCGCTCGACGCAAAATGTCGCGACAAGTTTCT
CGTTCAGTCGGCGCCGATTACGGCCGACAAAGAGTTTGCGAGCATTGCTCTGGTGGTAAGTTGAAGAGTTTGGGT
GAGAGAACCAACTGACAATCCGGTAGCTCGAGTCGACGGAAAAGGGGCGGATCCAAGAGCGCAAAATCCGTGTCA
ACTGGCTGCCTGCCGCCGGCTCCGATCACGGCGCTTCCGTCCCTCAGACCGGGACCGTGACTCCAAACAGGCAGT
CGATGGTGAATGGGGTGGGTTACTCTGTAGCCGCTAAAAAGCCTACTCTAACAGTTCTCAGCGAAACGTCAGCGA
TACGCCCACGTCGCGCACCTACTCGTCCCCTCGAGGCACGACGGACTCGAATCCTCCTCCTTCCTACTCGGCCGA
GTCTTCCTTCGATAACGTAGACGCAAAGTCGGAGCGTCCCAAGTCGGCCGTTTCGCAAGCGGCTACGACGGTGTC
CGAATCGGCTCAGTCGACGTACGAGGAGCTCAAGGCCAAGCTGGCCCAGGCCGAGGCCCAGATCGTGATGCTCAA
GGACAACACTCTCCGTCAGCGCGGTTCCAAGGCCGGCGTGAGCGAGAGCACCACGACGAGCGGCCCCGTGGCGCA
GGCCGTCAAGCAGGCGGACGGTGTGCCGGTGCAGGTGGTGGCCATCCTCTGTCTACTGAGCTTCCTACTCGCCTA
CTTCTTCTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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