© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06853 |
| Gene name | |
| Location | scaffold_08:1224656..1227571 |
| Strand | + |
| Gene length (bp) | 2915 |
| Transcript length (bp) | 2700 |
| Coding sequence length (bp) | 2700 |
| Protein length (aa) | 900 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01644 | Chitin_synth_1 | Chitin synthase | 4.2E-73 | 231 | 393 |
| PF08407 | Chitin_synth_1N | Chitin synthase N-terminal | 1.0E-27 | 159 | 230 |
| PF03142 | Chitin_synth_2 | Chitin synthase | 4.5E-17 | 371 | 545 |
| PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 3.2E-06 | 373 | 617 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006031 | chitin biosynthetic process | Yes |
| GO:0004100 | chitin synthase activity | Yes |
| GO:0016758 | hexosyltransferase activity | No |
| GO:1901071 | glucosamine-containing compound metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006022 | aminoglycan metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:1901073 | glucosamine-containing compound biosynthetic process | No |
| GO:0008375 | acetylglucosaminyltransferase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0008194 | UDP-glycosyltransferase activity | No |
| GO:0006030 | chitin metabolic process | No |
| GO:0046349 | amino sugar biosynthetic process | No |
| GO:0006023 | aminoglycan biosynthetic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006040 | amino sugar metabolic process | No |
| GO:0016757 | glycosyltransferase activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1498 | 0.079 | 0.0301 | 0.654 | 0.0622 | 0.0026 | 0.4738 | 0.372 | 0.358 | 0.0031 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 576 | 595 | 19 |
| 2 | 616 | 638 | 22 |
| 3 | 653 | 675 | 22 |
| 4 | 694 | 716 | 22 |
| 5 | 726 | 745 | 19 |
| 6 | 825 | 847 | 22 |
| 7 | 871 | 893 | 22 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GT2_Chitin_synth_1 | 4.3E-75 | 231 | 393 |
| Orthofinder run ID | 4 |
| Orthogroup | 206 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06853 MSYNRLDYHDPMDRRGRPYRTPSPGQPLQQGYQLDESPYGQQRLTPGPPSHQRLGTPSDQLNIHAASTVEHLPYS GSRGYGDAVVNPQLLHDEYGGTHPNYPSQDGYFDPQTHGYEVDDRRPMLDYHSTPGYDDPYHDHPQQQQQQQQQQ QLRRWKTVKQVLLYRGNLVLDCPVPPVLLQQNQHGERDEFTHMRYSAATCDPSEFYNENFTLRQQLFSKPRHTEL FIVITMYNEDDILFARTLIGVFKNIEYMCNRPNSKTWGNEAWKKIVVCVVSDGRAKINPRTKAVLSGMGVYQEGI AKQQVNNKDVTAHIYEYTTQTHLQLKNDTVVLVHRRRPVQMIFCLKEKNQKKINSHRWFFQAFGRVLDPNICVLL DAGTRPGGNSIYHLWKAFDLEPMCGGACGEIKAMLGTGGKNLVNPLVATQNFEYKMSNILDKPLESAFGFISVLP GAFSAYRYVALQNDKNGKGPLEKYFLGETLHGGSNAGLFESNMYLAEDRILCFELVTKRNCHWILQYVKSANGET DVPDTVTELVLQRRRWLNGSFFAAVYAIAHFHEFFRSDHSIFRKLGFFFEFVFQTINMIFAWFAIGNFFLVFKIL TTSLGSPELLGRVGEILSVVFTWLYGVILITCFVLSMGNRPAGSGRLYTAMVWFWAGIMIYLLFAAVFIAVKAII ADLNNGRPFNIREIFTNQVFYTLIVSVMSTYGIWLLASLLMFDPWHMITSFVQYMLLSPTYTNVLNVYAFCNTHD VSWGTKGDDTVEKLPSVNTKDGQGKTDLPDEGDLNAQYQREVAIFSAKYKAVKTKPTAAQLQEKQLDYYRGVRTG VVLIWMITNFALAALVLSSAGLEKITPGRGSQADEETARANLYMAIVLWSVAALSSFKFLGALWFLIIRLFRGV* |
| Coding | >Ophcf2|06853 ATGTCATACAATCGCCTCGACTATCACGATCCCATGGACCGTCGCGGCCGTCCTTATCGGACGCCTTCTCCTGGC CAGCCGCTGCAGCAGGGATATCAACTCGACGAAAGCCCCTATGGCCAGCAGCGACTCACCCCCGGTCCACCGAGC CATCAGCGTCTCGGCACCCCGAGCGACCAACTCAATATACATGCTGCGTCCACCGTCGAACACCTCCCTTACTCG GGCTCAAGAGGCTATGGCGACGCCGTCGTCAACCCACAGCTCCTCCACGACGAATACGGCGGCACGCACCCCAAC TATCCCTCGCAAGACGGCTACTTTGATCCTCAGACTCACGGATACGAGGTCGACGACCGCCGCCCGATGCTCGAC TATCACAGCACGCCCGGCTACGACGACCCGTACCATGATCACCCGCAACAACAACAGCAGCAGCAGCAGCAGCAG CAACTGAGGCGCTGGAAGACGGTCAAGCAGGTCCTGCTCTACCGCGGAAACCTCGTTCTCGACTGTCCCGTGCCG CCCGTCCTCCTGCAACAGAATCAGCACGGCGAGCGCGACGAGTTTACACACATGCGCTACTCGGCCGCGACCTGC GATCCTTCCGAGTTTTACAATGAAAATTTTACCCTCCGCCAGCAGTTGTTCAGCAAGCCGCGACACACTGAGCTT TTCATCGTCATAACCATGTATAACGAAGACGATATTCTGTTTGCCCGCACCCTCATTGGCGTTTTCAAGAACATC GAGTACATGTGCAACCGACCGAATAGCAAGACTTGGGGGAATGAGGCTTGGAAAAAGATTGTCGTCTGCGTCGTC AGCGACGGTCGCGCAAAGATTAATCCTCGGACAAAGGCTGTCCTCTCCGGCATGGGCGTCTACCAAGAGGGTATT GCCAAGCAGCAGGTCAACAACAAGGACGTGACGGCTCATATCTACGAGTACACGACGCAGACGCATCTACAGCTC AAGAATGACACCGTCGTGCTCGTCCACCGTCGTCGGCCGGTACAGATGATTTTCTGCCTCAAGGAGAAGAATCAG AAGAAAATAAATTCCCACCGCTGGTTCTTCCAGGCGTTTGGACGCGTCTTGGATCCCAACATTTGCGTCCTTCTC GACGCCGGAACCCGACCTGGAGGCAACTCCATCTACCACCTCTGGAAAGCCTTTGATCTCGAACCAATGTGCGGC GGCGCCTGCGGTGAAATCAAGGCCATGCTCGGAACCGGCGGCAAAAACCTCGTCAATCCCCTCGTGGCGACGCAG AATTTCGAATACAAGATGAGCAACATCCTCGACAAGCCGTTGGAATCCGCCTTTGGCTTCATTTCTGTCCTTCCC GGCGCCTTTTCCGCCTACCGCTACGTCGCCCTTCAAAACGACAAGAACGGCAAAGGACCGCTGGAAAAGTATTTC CTCGGCGAGACGCTTCACGGCGGTAGCAACGCCGGTCTCTTCGAATCCAACATGTACCTCGCCGAAGACCGCATC CTCTGTTTCGAGCTCGTCACCAAGCGCAACTGCCACTGGATCCTGCAGTACGTGAAGTCGGCCAACGGAGAGACG GACGTCCCAGACACCGTCACCGAGCTGGTGCTGCAGCGACGACGATGGCTCAACGGATCCTTTTTCGCCGCCGTC TACGCCATTGCTCACTTTCACGAATTCTTCCGCTCCGATCACTCTATCTTTCGCAAGCTCGGCTTCTTCTTCGAG TTTGTCTTTCAGACCATCAACATGATTTTCGCCTGGTTTGCCATTGGCAACTTTTTCCTCGTCTTCAAAATCCTC ACCACCAGCCTGGGGTCCCCGGAGCTGCTCGGTAGGGTCGGGGAGATTCTCAGCGTCGTCTTTACCTGGCTGTAC GGTGTCATTCTGATCACCTGCTTTGTCCTGTCCATGGGCAATCGCCCGGCAGGTTCGGGGAGGCTATACACCGCC ATGGTCTGGTTCTGGGCCGGCATCATGATCTACCTCCTCTTTGCCGCCGTCTTCATCGCCGTCAAGGCCATCATC GCCGACCTCAACAACGGCCGACCCTTTAATATCCGGGAAATCTTTACCAACCAAGTCTTTTACACCCTCATCGTC TCCGTCATGTCCACCTATGGCATCTGGCTCCTCGCCTCGCTGCTGATGTTCGACCCATGGCACATGATTACTTCT TTCGTCCAATACATGCTGCTGTCGCCGACGTACACCAACGTGCTGAACGTCTACGCCTTTTGCAACACGCACGAC GTCTCGTGGGGAACAAAAGGCGACGACACGGTGGAAAAGCTCCCGTCGGTCAACACCAAAGACGGACAAGGAAAG ACGGATCTACCAGACGAAGGCGACCTCAACGCCCAGTACCAGCGCGAGGTGGCCATCTTTAGCGCAAAGTACAAG GCCGTCAAGACGAAGCCCACGGCCGCCCAACTCCAAGAGAAGCAACTCGACTACTACCGCGGCGTGCGTACCGGC GTCGTCCTCATCTGGATGATTACCAACTTTGCCCTCGCCGCCTTGGTCTTGAGCTCGGCGGGGTTGGAGAAGATT ACTCCCGGTCGAGGAAGCCAGGCGGATGAGGAGACTGCGCGGGCGAACCTCTACATGGCCATCGTGCTCTGGAGC GTTGCGGCGCTCAGCTCTTTCAAGTTTCTAGGCGCGTTGTGGTTTTTGATTATACGGTTGTTTAGGGGCGTCTGA |
| Transcript | >Ophcf2|06853 ATGTCATACAATCGCCTCGACTATCACGATCCCATGGACCGTCGCGGCCGTCCTTATCGGACGCCTTCTCCTGGC CAGCCGCTGCAGCAGGGATATCAACTCGACGAAAGCCCCTATGGCCAGCAGCGACTCACCCCCGGTCCACCGAGC CATCAGCGTCTCGGCACCCCGAGCGACCAACTCAATATACATGCTGCGTCCACCGTCGAACACCTCCCTTACTCG GGCTCAAGAGGCTATGGCGACGCCGTCGTCAACCCACAGCTCCTCCACGACGAATACGGCGGCACGCACCCCAAC TATCCCTCGCAAGACGGCTACTTTGATCCTCAGACTCACGGATACGAGGTCGACGACCGCCGCCCGATGCTCGAC TATCACAGCACGCCCGGCTACGACGACCCGTACCATGATCACCCGCAACAACAACAGCAGCAGCAGCAGCAGCAG CAACTGAGGCGCTGGAAGACGGTCAAGCAGGTCCTGCTCTACCGCGGAAACCTCGTTCTCGACTGTCCCGTGCCG CCCGTCCTCCTGCAACAGAATCAGCACGGCGAGCGCGACGAGTTTACACACATGCGCTACTCGGCCGCGACCTGC GATCCTTCCGAGTTTTACAATGAAAATTTTACCCTCCGCCAGCAGTTGTTCAGCAAGCCGCGACACACTGAGCTT TTCATCGTCATAACCATGTATAACGAAGACGATATTCTGTTTGCCCGCACCCTCATTGGCGTTTTCAAGAACATC GAGTACATGTGCAACCGACCGAATAGCAAGACTTGGGGGAATGAGGCTTGGAAAAAGATTGTCGTCTGCGTCGTC AGCGACGGTCGCGCAAAGATTAATCCTCGGACAAAGGCTGTCCTCTCCGGCATGGGCGTCTACCAAGAGGGTATT GCCAAGCAGCAGGTCAACAACAAGGACGTGACGGCTCATATCTACGAGTACACGACGCAGACGCATCTACAGCTC AAGAATGACACCGTCGTGCTCGTCCACCGTCGTCGGCCGGTACAGATGATTTTCTGCCTCAAGGAGAAGAATCAG AAGAAAATAAATTCCCACCGCTGGTTCTTCCAGGCGTTTGGACGCGTCTTGGATCCCAACATTTGCGTCCTTCTC GACGCCGGAACCCGACCTGGAGGCAACTCCATCTACCACCTCTGGAAAGCCTTTGATCTCGAACCAATGTGCGGC GGCGCCTGCGGTGAAATCAAGGCCATGCTCGGAACCGGCGGCAAAAACCTCGTCAATCCCCTCGTGGCGACGCAG AATTTCGAATACAAGATGAGCAACATCCTCGACAAGCCGTTGGAATCCGCCTTTGGCTTCATTTCTGTCCTTCCC GGCGCCTTTTCCGCCTACCGCTACGTCGCCCTTCAAAACGACAAGAACGGCAAAGGACCGCTGGAAAAGTATTTC CTCGGCGAGACGCTTCACGGCGGTAGCAACGCCGGTCTCTTCGAATCCAACATGTACCTCGCCGAAGACCGCATC CTCTGTTTCGAGCTCGTCACCAAGCGCAACTGCCACTGGATCCTGCAGTACGTGAAGTCGGCCAACGGAGAGACG GACGTCCCAGACACCGTCACCGAGCTGGTGCTGCAGCGACGACGATGGCTCAACGGATCCTTTTTCGCCGCCGTC TACGCCATTGCTCACTTTCACGAATTCTTCCGCTCCGATCACTCTATCTTTCGCAAGCTCGGCTTCTTCTTCGAG TTTGTCTTTCAGACCATCAACATGATTTTCGCCTGGTTTGCCATTGGCAACTTTTTCCTCGTCTTCAAAATCCTC ACCACCAGCCTGGGGTCCCCGGAGCTGCTCGGTAGGGTCGGGGAGATTCTCAGCGTCGTCTTTACCTGGCTGTAC GGTGTCATTCTGATCACCTGCTTTGTCCTGTCCATGGGCAATCGCCCGGCAGGTTCGGGGAGGCTATACACCGCC ATGGTCTGGTTCTGGGCCGGCATCATGATCTACCTCCTCTTTGCCGCCGTCTTCATCGCCGTCAAGGCCATCATC GCCGACCTCAACAACGGCCGACCCTTTAATATCCGGGAAATCTTTACCAACCAAGTCTTTTACACCCTCATCGTC TCCGTCATGTCCACCTATGGCATCTGGCTCCTCGCCTCGCTGCTGATGTTCGACCCATGGCACATGATTACTTCT TTCGTCCAATACATGCTGCTGTCGCCGACGTACACCAACGTGCTGAACGTCTACGCCTTTTGCAACACGCACGAC GTCTCGTGGGGAACAAAAGGCGACGACACGGTGGAAAAGCTCCCGTCGGTCAACACCAAAGACGGACAAGGAAAG ACGGATCTACCAGACGAAGGCGACCTCAACGCCCAGTACCAGCGCGAGGTGGCCATCTTTAGCGCAAAGTACAAG GCCGTCAAGACGAAGCCCACGGCCGCCCAACTCCAAGAGAAGCAACTCGACTACTACCGCGGCGTGCGTACCGGC GTCGTCCTCATCTGGATGATTACCAACTTTGCCCTCGCCGCCTTGGTCTTGAGCTCGGCGGGGTTGGAGAAGATT ACTCCCGGTCGAGGAAGCCAGGCGGATGAGGAGACTGCGCGGGCGAACCTCTACATGGCCATCGTGCTCTGGAGC GTTGCGGCGCTCAGCTCTTTCAAGTTTCTAGGCGCGTTGTGGTTTTTGATTATACGGTTGTTTAGGGGCGTCTGA |
| Gene | >Ophcf2|06853 ATGTCATACAATCGCCTCGGTACGTGCGTTGCGACATGCGCCTCCCTGATTCACGGCCTCCCTAGCCTCGTGGCT TCGCATGCCATTTACATTTAACCTGTCCTCTTCATCACCCCTTTTGCTAATTCGACAGACTATCACGATCCCATG GACCGTCGCGGCCGTCCTTATCGGACGCCTTCTCCTGGCCAGCCGCTGCAGCAGGGATATCAACTCGACGAAAGC CCCTATGGCCAGCAGCGACTCACCCCCGGTCCACCGAGCCATCAGCGTCTCGGCACCCCGAGCGACCAACTCAAT ATACATGCTGCGGTAGGTTGAAGCAACGCGCCGACGCTGCTTTGCTGACGCCCCCCAGTCCACCGTCGAACACCT CCCTTACTCGGGCTCAAGAGGCTATGGCGACGCCGTCGTCAACCCACAGCTCCTCCACGACGAATACGGCGGCAC GCACCCCAACTATCCCTCGCAAGACGGCTACTTTGATCCTCAGACTCACGGATACGAGGTCGACGACCGCCGCCC GATGCTCGACTATCACAGCACGCCCGGCTACGACGACCCGTACCATGATCACCCGCAACAACAACAGCAGCAGCA GCAGCAGCAGCAACTGAGGCGCTGGAAGACGGTCAAGCAGGTCCTGCTCTACCGCGGAAACCTCGTTCTCGACTG TCCCGTGCCGCCCGTCCTCCTGCAACAGAATCAGCACGGCGAGCGCGACGAGTTTACACACATGCGCTACTCGGC CGCGACCTGCGATCCTTCCGAGTTTTACAATGAAAATTTTACCCTCCGCCAGCAGTTGTTCAGCAAGCCGCGACA CACTGAGCTTTTCATCGTCATAACCATGTATAACGAAGACGATATTCTGTTTGCCCGCACCCTCATTGGCGTTTT CAAGAACATCGAGTACATGTGCAACCGACCGAATAGCAAGACTTGGGGGAATGAGGCTTGGAAAAAGATTGTCGT CTGCGTCGTCAGCGACGGTCGCGCAAAGATTAATCCTCGGACAAAGGCTGTCCTCTCCGGCATGGGCGTCTACCA AGAGGGTATTGCCAAGCAGCAGGTCAACAACAAGGACGTGACGGCTCATATCTACGAGTACACGACGCAGACGCA TCTACAGCTCAAGAATGACACCGTCGTGCTCGTCCACCGTCGTCGGCCGGTACAGATGATTTTCTGCCTCAAGGA GAAGAATCAGAAGAAAATAAATTCCCACCGCTGGTTCTTCCAGGCGTTTGGACGCGTCTTGGATCCCAACATTTG CGTCCTTCTCGACGCCGGAACCCGACCTGGAGGCAACTCCATCTACCACCTCTGGAAAGCCTTTGATCTCGAACC AATGTGCGGCGGCGCCTGCGGTGAAATCAAGGCCATGCTCGGAACCGGCGGCAAAAACCTCGTCAATCCCCTCGT GGCGACGCAGAATTTCGAATACAAGATGAGCAACATCCTCGACAAGCCGTTGGAATCCGCCTTTGGCTTCATTTC TGTCCTTCCCGGCGCCTTTTCCGCCTACCGCTACGTCGCCCTTCAAAACGACAAGAACGGCAAAGGACCGCTGGA AAAGTATTTCCTCGGCGAGACGCTTCACGGCGGTAGCAACGCCGGTCTCTTCGAATCCAACATGTACCTCGCCGA AGACCGCATCCTCTGTTTCGAGCTCGTCACCAAGCGCAACTGCCACTGGATCCTGCAGTACGTGAAGTCGGCCAA CGGAGAGACGGACGTCCCAGACACCGTCACCGAGCTGGTGCTGCAGCGACGACGATGGCTCAACGGATCCTTTTT CGCCGCCGTCTACGCCATTGCTCACTTTCACGAATTCTTCCGCTCCGATCACTCTATCTTTCGCAAGCTCGGCTT CTTCTTCGAGTTTGTCTTTCAGACCATCAACATGATTTTCGCCTGGTTTGCCATTGGCAACTTTTTCCTCGTCTT CAAAATCCTCACCACCAGCCTGGGGTCCCCGGAGCTGCTCGGTAGGGTCGGGGAGATTCTCAGCGTCGTCTTTAC CTGGCTGTACGGTGTCATTCTGATCACCTGCTTTGTCCTGTCCATGGGCAATCGCCCGGCAGGTTCGGGGAGGCT ATACACCGCCATGGTCTGGTTCTGGGCCGGCATCATGATGTGAGTACCGCGCAGTGAGTGTGCTGGCAAAAGTCA GCCGCTAACTTGTTCTCAGCTACCTCCTCTTTGCCGCCGTCTTCATCGCCGTCAAGGCCATCATCGCCGACCTCA ACAACGGCCGACCCTTTAATATCCGGGAAATCTTTACCAACCAAGTCTTTTACACCCTCATCGTCTCCGTCATGT CCACCTATGGCATCTGGCTCCTCGCCTCGCTGCTGATGTTCGACCCATGGCACATGATTACTTCTTTCGTCCAAT ACATGCTGCTGTCGCCGACGTACACCAACGTGCTGAACGTCTACGCCTTTTGCAACACGCACGACGTCTCGTGGG GAACAAAAGGCGACGACACGGTGGAAAAGCTCCCGTCGGTCAACACCAAAGACGGACAAGGAAAGACGGATCTAC CAGACGAAGGCGACCTCAACGCCCAGTACCAGCGCGAGGTGGCCATCTTTAGCGCAAAGTACAAGGCCGTCAAGA CGAAGCCCACGGCCGCCCAACTCCAAGAGAAGCAACTCGACTACTACCGCGGCGTGCGTACCGGCGTCGTCCTCA TCTGGATGATTACCAACTTTGCCCTCGCCGCCTTGGTCTTGAGCTCGGCGGGGTTGGAGAAGATTACTCCCGGTC GAGGAAGCCAGGCGGATGAGGAGACTGCGCGGGCGAACCTCTACATGGCCATCGTGCTCTGGAGCGTTGCGGCGC TCAGCTCTTTCAAGTTTCTAGGCGCGTTGTGGTTTTTGATTATACGGTTGTTTAGGGGCGTCTGA |