© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06787 |
| Gene name | |
| Location | scaffold_08:1064139..1065043 |
| Strand | - |
| Gene length (bp) | 904 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 44 | 66 | 22 |
| 3 | 81 | 98 | 17 |
| 4 | 119 | 141 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 90.60 | 50.31 | 130.89 |
| Alive | In ants, during behavior modification | 69.63 | 37.08 | 102.18 |
| Dead | In ants, recently dead | 64.41 | 34.00 | 94.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.210123 | no |
| Alive | Dead | 0.713322 | no |
| Dead | Fungus | 0.087745 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06787 MVDLEWDPDNVPRTKLVLHTLQMLLVFTIWCLEIAVFVGKGAKIVADNAFTFTMCFVSIPAWLYLLMAPRFDRGR RFAEPRAMLVIDVLFTILWLAAFATQAAYNTANLCGQRCNLSKGIVGLGIFTTLLFAATSLISAYTLKYYNFHGT LPGYESRKALNANGSSSAIDPDKAAFSTADEDYERVNLDDREAAGANDYSDSGRYAPANPYSADDFADPSRYSPL PPRNNDLFNTDTEYSSGGAAHKPYADEPARFPAGNYDRAHP* |
| Coding | >Ophcf2|06787 ATGGTCGACTTAGAGTGGGATCCTGACAATGTCCCGCGGACGAAGCTCGTGCTACACACCCTACAGATGCTGCTC GTCTTCACCATCTGGTGTTTGGAAATCGCCGTCTTCGTGGGCAAGGGCGCCAAGATCGTCGCCGACAATGCCTTT ACATTCACCATGTGCTTCGTCTCCATTCCTGCGTGGCTCTATCTCTTGATGGCACCTCGGTTCGATCGTGGCCGC CGCTTCGCCGAACCGCGCGCTATGCTCGTCATCGACGTCCTCTTCACCATCCTTTGGCTGGCGGCCTTTGCCACC CAGGCCGCTTATAACACGGCCAACCTCTGCGGCCAGCGCTGCAACTTGAGCAAGGGTATCGTCGGGCTGGGCATC TTCACAACACTACTCTTCGCCGCTACTTCGCTCATCAGCGCCTACACGCTCAAGTACTACAACTTCCACGGCACA CTTCCAGGCTACGAGTCTCGCAAGGCGCTCAACGCCAACGGCAGCTCCAGCGCCATCGACCCCGACAAGGCCGCC TTCTCCACGGCCGACGAGGACTACGAGCGGGTCAACCTCGACGACCGCGAGGCCGCCGGCGCCAACGACTACTCC GACTCGGGCCGTTACGCCCCGGCGAACCCCTACAGCGCCGATGACTTTGCCGATCCCAGCCGTTACAGCCCGCTG CCGCCTCGCAACAACGACCTCTTTAATACCGATACCGAGTACAGCTCGGGCGGCGCGGCGCACAAGCCGTACGCG GATGAGCCCGCGCGTTTTCCTGCCGGCAACTACGATCGGGCGCATCCGTAG |
| Transcript | >Ophcf2|06787 ATGGTCGACTTAGAGTGGGATCCTGACAATGTCCCGCGGACGAAGCTCGTGCTACACACCCTACAGATGCTGCTC GTCTTCACCATCTGGTGTTTGGAAATCGCCGTCTTCGTGGGCAAGGGCGCCAAGATCGTCGCCGACAATGCCTTT ACATTCACCATGTGCTTCGTCTCCATTCCTGCGTGGCTCTATCTCTTGATGGCACCTCGGTTCGATCGTGGCCGC CGCTTCGCCGAACCGCGCGCTATGCTCGTCATCGACGTCCTCTTCACCATCCTTTGGCTGGCGGCCTTTGCCACC CAGGCCGCTTATAACACGGCCAACCTCTGCGGCCAGCGCTGCAACTTGAGCAAGGGTATCGTCGGGCTGGGCATC TTCACAACACTACTCTTCGCCGCTACTTCGCTCATCAGCGCCTACACGCTCAAGTACTACAACTTCCACGGCACA CTTCCAGGCTACGAGTCTCGCAAGGCGCTCAACGCCAACGGCAGCTCCAGCGCCATCGACCCCGACAAGGCCGCC TTCTCCACGGCCGACGAGGACTACGAGCGGGTCAACCTCGACGACCGCGAGGCCGCCGGCGCCAACGACTACTCC GACTCGGGCCGTTACGCCCCGGCGAACCCCTACAGCGCCGATGACTTTGCCGATCCCAGCCGTTACAGCCCGCTG CCGCCTCGCAACAACGACCTCTTTAATACCGATACCGAGTACAGCTCGGGCGGCGCGGCGCACAAGCCGTACGCG GATGAGCCCGCGCGTTTTCCTGCCGGCAACTACGATCGGGCGCATCCGTAG |
| Gene | >Ophcf2|06787 ATGGTCGACTTAGAGTGGGATCCTGACAATGTCCCGCGGACGAAGCTCGTGCTACACACCCTACAGATGCTGCTC GTCTTCACCATCTGGTGTTTGGAAATCGCCGTCTTCGTGGGCAAGGGCGCCAAGATCGTCGCCGACAATGCCTTT ACATTCACCATGGTTCGTCTTGTCTGGGCTCCCTCAAGCTCCCCGTGACTGACGCTCCGGCGCAGTGCTTCGTCT CCATTCCTGCGTGGCTCTATCTCTTGATGGCACCTCGGTTCGATCGTGGCCGCCGCTTCGCCGAACCGCGCGCTA TGCTCGTCATCGACGTCCTCTTCACCATCCTTTGGCTGGCGGCCTTTGCCACCCAGGCCGCTTATAACACGGCCA ACCTCTGCGGCCAGCGCTGCAACTTGAGCAAGGGTATCGTCGGGCTGGGCATCTTCACAACGTGCGTACATAATG CCAATGTCCCTGACGAAATCTAATCTTTCCATTTAGACTACTCTTCGCCGCTACTTCGCTCATCAGCGCCTACAC GCTCAAGTACTACAACTTCCACGGCACACTTCCAGGCTACGAGTCTCGCAAGGCGCTCAACGCCAACGGCAGCTC CAGCGCCATCGACCCCGACAAGGCCGCCTTCTCCACGGCCGACGAGGACTACGAGCGGGTCAACCTCGACGACCG CGAGGCCGCCGGCGCCAACGACTACTCCGACTCGGGCCGTTACGCCCCGGCGAACCCCTACAGCGCCGATGACTT TGCCGATCCCAGCCGTTACAGCCCGCTGCCGCCTCGCAACAACGACCTCTTTAATACCGATACCGAGTACAGCTC GGGCGGCGCGGCGCACAAGCCGTACGCGGATGAGCCCGCGCGTTTTCCTGCCGGCAACTACGATCGGGCGCATCC GTAG |