Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06776
Gene name
Locationscaffold_08:1036204..1037423
Strand+
Gene length (bp)1219
Transcript length (bp)1155
Coding sequence length (bp)1155
Protein length (aa) 385

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04479 RTA1 RTA1 like protein 8.4E-57 128 349

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

Domain # Start End Length
1 92 114 22
2 121 140 19
3 155 177 22
4 197 219 22
5 234 256 22
6 288 310 22
7 320 342 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06776
MATDSPFPEDAAAVTDTAPDGIPPDSLPTGLPPDGLPPDGLPPDGLPLDGLPAGLTPGLPPDLSPDKIQSFCESN
PTQMPCASLPGLYQYRINLPANAIFLTLFCLSLIWFCVVLARNRRGALFTLAMVAGLLCEIFGYANRIINFDNQW
SVLPFALQFSLITLGPTCMAAGIYMCLSRIVSAVGIDNSRIPGDYYTKFFVPCDIMALLLQAIGGAVTATSVIGG
RSPDTGNRILIFGLVLQILTLAGFIGAATDFSIRTYRRRKRLGRAAFSHHPAFVRLRSTMRFRGFVGALALATLC
IFCRSVFHLAELSEGITGPIFGNQGLFIFFEGVLIVIAAFALNVMNPILTAPELFPGGGFALWKKEAAPPPVIVH
KVVDWNDKV*
Coding >Ophcf2|06776
ATGGCCACCGACTCTCCTTTCCCGGAAGATGCGGCCGCGGTGACGGACACGGCCCCGGATGGCATCCCCCCGGAT
AGTCTACCCACGGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTCCCTCTGGACGGT
CTACCCGCAGGACTTACCCCGGGTCTCCCCCCAGACCTCTCACCAGACAAGATCCAAAGCTTCTGCGAGAGCAAC
CCAACACAGATGCCATGCGCCAGCCTCCCAGGACTATACCAGTACCGCATCAACCTGCCAGCCAACGCCATCTTC
CTAACCCTCTTCTGCCTCTCGCTCATATGGTTCTGCGTCGTGCTGGCGCGGAACCGGCGCGGGGCCCTCTTCACG
CTGGCCATGGTTGCCGGCCTGCTGTGCGAGATCTTTGGATACGCAAACCGCATCATCAACTTTGACAACCAGTGG
AGCGTCTTGCCTTTTGCCCTGCAGTTCTCGCTCATCACCCTGGGGCCGACGTGCATGGCTGCCGGTATTTACATG
TGTCTGAGTCGAATCGTCTCCGCCGTTGGCATCGATAACTCACGAATCCCCGGCGACTACTACACCAAATTCTTC
GTCCCCTGCGACATCATGGCCCTCCTCCTTCAAGCCATCGGCGGCGCCGTCACAGCGACGTCGGTCATCGGAGGC
CGATCTCCAGACACGGGCAACCGGATCCTCATCTTCGGCCTCGTGCTGCAGATCCTAACGCTGGCCGGCTTCATC
GGCGCCGCCACCGACTTTTCCATCCGCACGTATCGCCGCAGGAAGAGACTGGGAAGGGCGGCCTTTTCGCACCAC
CCGGCCTTTGTACGGCTGCGGTCGACGATGCGCTTTCGAGGCTTCGTCGGGGCATTGGCGCTGGCAACGCTTTGC
ATCTTTTGCCGAAGCGTCTTTCACCTTGCCGAGCTCAGCGAGGGTATCACGGGGCCCATATTTGGTAACCAGGGA
CTCTTTATCTTCTTTGAGGGTGTCCTCATTGTCATCGCTGCCTTTGCTCTCAACGTGATGAACCCGATCCTGACG
GCGCCTGAGTTATTCCCAGGCGGTGGCTTTGCGCTGTGGAAGAAGGAGGCCGCGCCGCCGCCGGTGATTGTTCAC
AAGGTTGTCGACTGGAATGACAAGGTGTAA
Transcript >Ophcf2|06776
ATGGCCACCGACTCTCCTTTCCCGGAAGATGCGGCCGCGGTGACGGACACGGCCCCGGATGGCATCCCCCCGGAT
AGTCTACCCACGGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTCCCTCTGGACGGT
CTACCCGCAGGACTTACCCCGGGTCTCCCCCCAGACCTCTCACCAGACAAGATCCAAAGCTTCTGCGAGAGCAAC
CCAACACAGATGCCATGCGCCAGCCTCCCAGGACTATACCAGTACCGCATCAACCTGCCAGCCAACGCCATCTTC
CTAACCCTCTTCTGCCTCTCGCTCATATGGTTCTGCGTCGTGCTGGCGCGGAACCGGCGCGGGGCCCTCTTCACG
CTGGCCATGGTTGCCGGCCTGCTGTGCGAGATCTTTGGATACGCAAACCGCATCATCAACTTTGACAACCAGTGG
AGCGTCTTGCCTTTTGCCCTGCAGTTCTCGCTCATCACCCTGGGGCCGACGTGCATGGCTGCCGGTATTTACATG
TGTCTGAGTCGAATCGTCTCCGCCGTTGGCATCGATAACTCACGAATCCCCGGCGACTACTACACCAAATTCTTC
GTCCCCTGCGACATCATGGCCCTCCTCCTTCAAGCCATCGGCGGCGCCGTCACAGCGACGTCGGTCATCGGAGGC
CGATCTCCAGACACGGGCAACCGGATCCTCATCTTCGGCCTCGTGCTGCAGATCCTAACGCTGGCCGGCTTCATC
GGCGCCGCCACCGACTTTTCCATCCGCACGTATCGCCGCAGGAAGAGACTGGGAAGGGCGGCCTTTTCGCACCAC
CCGGCCTTTGTACGGCTGCGGTCGACGATGCGCTTTCGAGGCTTCGTCGGGGCATTGGCGCTGGCAACGCTTTGC
ATCTTTTGCCGAAGCGTCTTTCACCTTGCCGAGCTCAGCGAGGGTATCACGGGGCCCATATTTGGTAACCAGGGA
CTCTTTATCTTCTTTGAGGGTGTCCTCATTGTCATCGCTGCCTTTGCTCTCAACGTGATGAACCCGATCCTGACG
GCGCCTGAGTTATTCCCAGGCGGTGGCTTTGCGCTGTGGAAGAAGGAGGCCGCGCCGCCGCCGGTGATTGTTCAC
AAGGTTGTCGACTGGAATGACAAGGTGTAA
Gene >Ophcf2|06776
ATGGCCACCGACTCTCCTTTCCCGGAAGATGCGGCCGCGGTGACGGACACGGCCCCGGATGGCATCCCCCCGGAT
AGTCTACCCACGGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTGCCTCCGGACGGACTCCCTCTGGACGGT
CTACCCGCAGGACTTACCCCGGGTCTCCCCCCAGACCTCTCACCAGACAAGATCCAAAGCTTCTGCGAGAGCAAC
CCAACACAGATGCCATGCGCCAGCCTCCCAGGACTATACCAGTACCGCATCAACCTGCCAGCCAACGCCATCTTC
CTAACCCTCTTCTGCCTCTCGCTCATATGGTTCTGCGTCGTGCTGGCGCGGAACCGGCGCGGGGCCCTCTTCACG
CTGGCCATGGTTGCCGGCCTGCTGTGCGAGATCTTTGGATACGCAAACCGCATCATCAACTTTGACAACCAGTGG
AGCGTCTTGCCTTTTGCCCTGCAGTTCTCGCTCATCACCCTGGGGCCGACGTGCATGGCTGCCGGTATTTACATG
TGTCTGAGTCGAATCGTCTCCGCCGTTGGCATCGATAACTCACGAATCCCCGGCGACTACTACACCAAATTCGTG
CGTTGTCTTGTTTCTCCCCTTGCCGTGAATCGCTTGGCGGCTGACGTGTACTCTCTGGCAGTTCGTCCCCTGCGA
CATCATGGCCCTCCTCCTTCAAGCCATCGGCGGCGCCGTCACAGCGACGTCGGTCATCGGAGGCCGATCTCCAGA
CACGGGCAACCGGATCCTCATCTTCGGCCTCGTGCTGCAGATCCTAACGCTGGCCGGCTTCATCGGCGCCGCCAC
CGACTTTTCCATCCGCACGTATCGCCGCAGGAAGAGACTGGGAAGGGCGGCCTTTTCGCACCACCCGGCCTTTGT
ACGGCTGCGGTCGACGATGCGCTTTCGAGGCTTCGTCGGGGCATTGGCGCTGGCAACGCTTTGCATCTTTTGCCG
AAGCGTCTTTCACCTTGCCGAGCTCAGCGAGGGTATCACGGGGCCCATATTTGGTAACCAGGGACTCTTTATCTT
CTTTGAGGGTGTCCTCATTGTCATCGCTGCCTTTGCTCTCAACGTGATGAACCCGATCCTGACGGCGCCTGAGTT
ATTCCCAGGCGGTGGCTTTGCGCTGTGGAAGAAGGAGGCCGCGCCGCCGCCGGTGATTGTTCACAAGGTTGTCGA
CTGGAATGACAAGGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail