© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06764 |
| Gene name | |
| Location | scaffold_08:1000772..1002712 |
| Strand | + |
| Gene length (bp) | 1940 |
| Transcript length (bp) | 1878 |
| Coding sequence length (bp) | 1878 |
| Protein length (aa) | 626 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 2.4E-57 | 111 | 556 |
| PF00324 | AA_permease | Amino acid permease | 6.8E-27 | 119 | 435 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 110 | 132 | 22 |
| 2 | 147 | 169 | 22 |
| 3 | 190 | 212 | 22 |
| 4 | 227 | 249 | 22 |
| 5 | 261 | 283 | 22 |
| 6 | 345 | 367 | 22 |
| 7 | 387 | 409 | 22 |
| 8 | 467 | 489 | 22 |
| 9 | 496 | 518 | 22 |
| 10 | 533 | 552 | 19 |
| 11 | 559 | 576 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06764 MPAPSGAQTTRDSLELASLASSSVVQDGEPSSRPSMTSSPRLSFTEEDPLDEDNPAGGVGRHRSYSVSSAFDFAG NLFPLSSTTGTGGYAPLGASTSAGGGGSLEKHKTLTYFNGLSLIVGLIIGSGIFSSPSQVSSKVGSAGAALVVWV VAGILAWTGAASYAELGGAIPLNGGSQVYLAKTFGELAGFLFTWVAVLVLKPGSAAIIAIIMGEYLVRAVMGADV ETVNPWVYKTVALVGVALVTLLNCLSTRAGTRVNDLLVLLKFVALLGVTVMGVFVAITGRTLQGEVDVVWKAHDW FTGTSSDLSNWAVALYAGLWAFDGWDNTNYVVGEFRNPSRDLPRVMHTAMPLVILCYTLANVAYFLVLPIEVVNE SNTVAVKFGARVLGRVGALVMALTVSASCFGALNSSTFTAGRLVYVAAKEEYIPAVFGRLGTSVGGASASATGRR PSWYWRAALGCLGDDDVGFFYTPMYALALNGLLTAGYCVAGEFATLVTFYGVAGYTFYFLTVLGLILLRVREPTL ERPYKTWITTPIVFCCVSLFLLSRAVFAKPLQTLAVVGFVVAGVPVYLWRVRGRDRRAAVTGSRPKREGRGGVWD GEGRREVVEAVLEAVVMRNEGDDDG* |
| Coding | >Ophcf2|06764 ATGCCAGCCCCGTCGGGCGCCCAGACGACGCGCGACTCGTTGGAGCTCGCTTCCCTGGCCAGCTCCAGCGTGGTG CAGGATGGCGAGCCGTCGTCGCGTCCTAGCATGACGTCTTCGCCCCGGCTGTCCTTTACCGAGGAGGATCCGCTG GACGAGGACAACCCGGCCGGGGGCGTTGGGCGGCACCGGTCCTACTCCGTCTCGTCCGCCTTTGACTTTGCCGGC AACCTGTTCCCGCTCAGCTCGACGACCGGCACGGGCGGGTACGCTCCTCTCGGCGCTTCGACCTCGGCCGGCGGC GGGGGCTCGCTGGAGAAACACAAGACGTTGACGTACTTTAACGGCCTGTCGCTCATCGTCGGCCTCATCATCGGC TCCGGCATCTTCTCTTCGCCCAGCCAGGTCAGCTCCAAGGTCGGATCGGCGGGCGCGGCGCTGGTGGTGTGGGTG GTGGCCGGTATCCTGGCCTGGACGGGGGCCGCCTCGTACGCCGAGCTCGGAGGCGCCATACCCCTAAACGGCGGA TCGCAGGTGTACCTGGCCAAGACGTTTGGCGAGCTGGCCGGCTTCCTGTTTACGTGGGTGGCGGTGCTGGTGCTG AAGCCGGGTAGCGCGGCCATCATCGCCATCATCATGGGCGAGTATCTGGTGCGAGCCGTCATGGGCGCCGACGTC GAGACGGTCAACCCGTGGGTCTACAAGACGGTGGCGCTGGTGGGCGTCGCGCTGGTGACGCTGCTCAACTGCCTG TCGACGAGGGCGGGCACGCGCGTCAACGATCTGCTGGTACTGCTCAAGTTTGTGGCGCTGCTGGGCGTGACCGTC ATGGGCGTCTTTGTCGCCATCACGGGCCGTACGCTGCAGGGCGAGGTGGACGTGGTGTGGAAAGCACACGACTGG TTCACGGGCACGTCGTCGGACCTGTCCAACTGGGCCGTAGCGCTGTATGCTGGCCTGTGGGCTTTTGACGGATGG GACAATACCAACTACGTCGTGGGCGAGTTCCGCAACCCGAGCCGTGACCTACCTCGCGTCATGCACACGGCCATG CCGCTGGTGATTCTCTGCTACACGCTGGCCAACGTGGCCTACTTCCTGGTGCTTCCGATCGAGGTCGTCAACGAG TCCAATACGGTGGCGGTCAAGTTCGGGGCCCGAGTGCTGGGTCGGGTCGGGGCGCTGGTCATGGCTCTGACGGTG AGCGCCAGCTGCTTCGGCGCCCTCAACTCGTCGACCTTTACGGCCGGACGGCTGGTCTACGTCGCTGCCAAGGAG GAGTACATACCGGCCGTCTTTGGCCGTCTGGGCACGAGCGTCGGGGGGGCATCGGCATCGGCGACGGGACGGCGA CCGAGCTGGTACTGGCGCGCCGCGCTGGGGTGCCTGGGCGACGATGACGTCGGCTTCTTCTACACGCCCATGTAC GCGCTGGCGCTCAACGGGCTGCTGACGGCCGGCTACTGCGTGGCGGGCGAGTTTGCGACTCTGGTGACGTTTTAC GGCGTGGCCGGCTATACGTTTTACTTCCTCACCGTTCTGGGGCTGATCCTGCTGCGGGTTCGGGAGCCGACGCTG GAGAGGCCTTACAAGACGTGGATCACGACGCCCATCGTCTTTTGCTGCGTCAGCCTGTTCCTGCTGAGCCGGGCC GTCTTCGCCAAGCCGCTGCAGACGCTGGCGGTGGTGGGCTTCGTCGTCGCGGGCGTGCCGGTCTATCTGTGGCGG GTACGGGGACGGGATCGGAGGGCGGCGGTGACGGGATCGCGGCCTAAGAGGGAGGGAAGGGGTGGAGTCTGGGAC GGGGAGGGGAGGAGGGAAGTGGTGGAGGCGGTTCTGGAAGCGGTCGTGATGCGAAACGAGGGTGACGATGATGGG TGA |
| Transcript | >Ophcf2|06764 ATGCCAGCCCCGTCGGGCGCCCAGACGACGCGCGACTCGTTGGAGCTCGCTTCCCTGGCCAGCTCCAGCGTGGTG CAGGATGGCGAGCCGTCGTCGCGTCCTAGCATGACGTCTTCGCCCCGGCTGTCCTTTACCGAGGAGGATCCGCTG GACGAGGACAACCCGGCCGGGGGCGTTGGGCGGCACCGGTCCTACTCCGTCTCGTCCGCCTTTGACTTTGCCGGC AACCTGTTCCCGCTCAGCTCGACGACCGGCACGGGCGGGTACGCTCCTCTCGGCGCTTCGACCTCGGCCGGCGGC GGGGGCTCGCTGGAGAAACACAAGACGTTGACGTACTTTAACGGCCTGTCGCTCATCGTCGGCCTCATCATCGGC TCCGGCATCTTCTCTTCGCCCAGCCAGGTCAGCTCCAAGGTCGGATCGGCGGGCGCGGCGCTGGTGGTGTGGGTG GTGGCCGGTATCCTGGCCTGGACGGGGGCCGCCTCGTACGCCGAGCTCGGAGGCGCCATACCCCTAAACGGCGGA TCGCAGGTGTACCTGGCCAAGACGTTTGGCGAGCTGGCCGGCTTCCTGTTTACGTGGGTGGCGGTGCTGGTGCTG AAGCCGGGTAGCGCGGCCATCATCGCCATCATCATGGGCGAGTATCTGGTGCGAGCCGTCATGGGCGCCGACGTC GAGACGGTCAACCCGTGGGTCTACAAGACGGTGGCGCTGGTGGGCGTCGCGCTGGTGACGCTGCTCAACTGCCTG TCGACGAGGGCGGGCACGCGCGTCAACGATCTGCTGGTACTGCTCAAGTTTGTGGCGCTGCTGGGCGTGACCGTC ATGGGCGTCTTTGTCGCCATCACGGGCCGTACGCTGCAGGGCGAGGTGGACGTGGTGTGGAAAGCACACGACTGG TTCACGGGCACGTCGTCGGACCTGTCCAACTGGGCCGTAGCGCTGTATGCTGGCCTGTGGGCTTTTGACGGATGG GACAATACCAACTACGTCGTGGGCGAGTTCCGCAACCCGAGCCGTGACCTACCTCGCGTCATGCACACGGCCATG CCGCTGGTGATTCTCTGCTACACGCTGGCCAACGTGGCCTACTTCCTGGTGCTTCCGATCGAGGTCGTCAACGAG TCCAATACGGTGGCGGTCAAGTTCGGGGCCCGAGTGCTGGGTCGGGTCGGGGCGCTGGTCATGGCTCTGACGGTG AGCGCCAGCTGCTTCGGCGCCCTCAACTCGTCGACCTTTACGGCCGGACGGCTGGTCTACGTCGCTGCCAAGGAG GAGTACATACCGGCCGTCTTTGGCCGTCTGGGCACGAGCGTCGGGGGGGCATCGGCATCGGCGACGGGACGGCGA CCGAGCTGGTACTGGCGCGCCGCGCTGGGGTGCCTGGGCGACGATGACGTCGGCTTCTTCTACACGCCCATGTAC GCGCTGGCGCTCAACGGGCTGCTGACGGCCGGCTACTGCGTGGCGGGCGAGTTTGCGACTCTGGTGACGTTTTAC GGCGTGGCCGGCTATACGTTTTACTTCCTCACCGTTCTGGGGCTGATCCTGCTGCGGGTTCGGGAGCCGACGCTG GAGAGGCCTTACAAGACGTGGATCACGACGCCCATCGTCTTTTGCTGCGTCAGCCTGTTCCTGCTGAGCCGGGCC GTCTTCGCCAAGCCGCTGCAGACGCTGGCGGTGGTGGGCTTCGTCGTCGCGGGCGTGCCGGTCTATCTGTGGCGG GTACGGGGACGGGATCGGAGGGCGGCGGTGACGGGATCGCGGCCTAAGAGGGAGGGAAGGGGTGGAGTCTGGGAC GGGGAGGGGAGGAGGGAAGTGGTGGAGGCGGTTCTGGAAGCGGTCGTGATGCGAAACGAGGGTGACGATGATGGG TGA |
| Gene | >Ophcf2|06764 ATGCCAGCCCCGTCGGGCGCCCAGACGACGCGCGACTCGTTGGAGCTCGCTTCCCTGGCCAGCTCCAGCGTGGTG CAGGATGGCGAGCCGTCGTCGCGTCCTAGCATGACGTCTTCGCCCCGGCTGTCCTTTACCGAGGAGGATCCGCTG GACGAGGACAACCCGGCCGGGGGCGTTGGGCGGCACCGGTCCTACTCCGTCTCGTCCGCCTTTGACTTTGCCGGC AACCTGTTCCCGCTCAGCTCGACGACCGGCACGGGCGGGTACGCTCCTCTCGGCGCTTCGACCTCGGCCGGCGGC GGGGGCTCGCTGGAGAAACACAAGACGTTGACGTACTTTAACGGCCTGTCGCTCATCGTCGGCCTCATCATCGGC TCCGGCATCTTCTCTTCGCCCAGCCAGGTCAGCTCCAAGGTCGGATCGGCGGGCGCGGCGCTGGTGGTGTGGGTG GTGGCCGGTATCCTGGCCTGGACGGGGGCCGCCTCGTACGCCGAGCTCGGAGGCGCCATACCCCTAAACGGCGGA TCGCAGGTGTACCTGGCCAAGACGTTTGGCGAGCTGGCCGGCTTCCTGTTTACGTGGGTGGCGGTGCTGGTGCTG AAGCCGGGTAGCGCGGCCATCATCGCCATCATCATGGGCGAGTATCTGGTGCGAGCCGTCATGGGCGCCGACGTC GAGACGGTCAACCCGTGGGTCTACAAGACGGTGGCGCTGGTGGGCGTCGCGCTGGTGACGCTGCTCAACTGCCTG TCGACGAGGGCGGGCACGCGCGTCAACGATCTGCTGGTACTGCTCAAGTTTGTGGCGCTGCTGGGCGTGACCGTC ATGGGCGTCTTTGTCGCCATCACGGGCCGTACGCTGCAGGGCGAGGTGGACGTGGTGTGGAAAGCACACGACTGG TTCACGGGCACGTCGTCGGACCTGTCCAACTGGGCCGTAGCGCTGTATGCTGGCCTGTGGGCTTTTGACGGATGG GACAATGTGAGTTACGGCGACTCCTCGTACGTACGAAACGAGCTCGGGGGATGGCTGACGGTCTGCAGACCAACT ACGTCGTGGGCGAGTTCCGCAACCCGAGCCGTGACCTACCTCGCGTCATGCACACGGCCATGCCGCTGGTGATTC TCTGCTACACGCTGGCCAACGTGGCCTACTTCCTGGTGCTTCCGATCGAGGTCGTCAACGAGTCCAATACGGTGG CGGTCAAGTTCGGGGCCCGAGTGCTGGGTCGGGTCGGGGCGCTGGTCATGGCTCTGACGGTGAGCGCCAGCTGCT TCGGCGCCCTCAACTCGTCGACCTTTACGGCCGGACGGCTGGTCTACGTCGCTGCCAAGGAGGAGTACATACCGG CCGTCTTTGGCCGTCTGGGCACGAGCGTCGGGGGGGCATCGGCATCGGCGACGGGACGGCGACCGAGCTGGTACT GGCGCGCCGCGCTGGGGTGCCTGGGCGACGATGACGTCGGCTTCTTCTACACGCCCATGTACGCGCTGGCGCTCA ACGGGCTGCTGACGGCCGGCTACTGCGTGGCGGGCGAGTTTGCGACTCTGGTGACGTTTTACGGCGTGGCCGGCT ATACGTTTTACTTCCTCACCGTTCTGGGGCTGATCCTGCTGCGGGTTCGGGAGCCGACGCTGGAGAGGCCTTACA AGACGTGGATCACGACGCCCATCGTCTTTTGCTGCGTCAGCCTGTTCCTGCTGAGCCGGGCCGTCTTCGCCAAGC CGCTGCAGACGCTGGCGGTGGTGGGCTTCGTCGTCGCGGGCGTGCCGGTCTATCTGTGGCGGGTACGGGGACGGG ATCGGAGGGCGGCGGTGACGGGATCGCGGCCTAAGAGGGAGGGAAGGGGTGGAGTCTGGGACGGGGAGGGGAGGA GGGAAGTGGTGGAGGCGGTTCTGGAAGCGGTCGTGATGCGAAACGAGGGTGACGATGATGGGTGA |