Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06681
Gene name
Locationscaffold_08:790589..791047
Strand-
Gene length (bp)458
Transcript length (bp)285
Coding sequence length (bp)285
Protein length (aa) 95

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06522 B12D NADH-ubiquinone reductase complex 1 MLRQ subunit 1.3E-05 50 88

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.1073 0.107 0.0114 0.0989 0.9658 0.0322 0.1051 0.0486 0.0692 0.0266

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 52 71 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 615.99 341.84 890.14
Alive In ants, during behavior modification 429.43 221.27 637.59
Dead In ants, recently dead 373.08 191.82 554.34

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.077234 no
Alive Dead 0.495372 no
Dead Fungus 0.011483 yes

Orthologs

Orthofinder run ID4
Orthogroup4831
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4339
Ophiocordyceps australis map64 (Brazil) OphauB2|3285
Ophiocordyceps camponoti-floridani Ophcf2|06681 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|100
Ophiocordyceps kimflemingae Ophio5|7449
Ophiocordyceps subramaniannii Hirsu2|10741

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06681
MRSTVALRMFRPTQRMMFRSSPRVMRPLPNEELAGHTISQRLRKLKEIPAELIPLAVVVGFALFAAGYSIVRKIM
TDKNLRLTRSRQPPGRNDH*
Coding >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGAATGAAGAACTGGCAGGCCATACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCC
GAACTGATACCGCTCGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCTACTCGATCGTGAGGAAGATTATG
ACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATGACCACTGA
Transcript >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGAATGAAGAACTGGCAGGCCATACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCC
GAACTGATACCGCTCGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCTACTCGATCGTGAGGAAGATTATG
ACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATGACCACTGA
Gene >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGGTGAGTGCATGCCCAGGGATGTGCTTGGAGACTCGGATCTGACGCGCCGGACTAGAATGAAGA
ACTGGCAGGTGGGTAGCTGGAAGCTCTCCGACATTTGATGAATCTTGGGACGCAATCTGATCTCAGTCAAGGCCA
TACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCCGAACTGATACCGCTCGGTAACCCTACCCGACC
GGCTTCAAATGGCAGCTGCCAAGCGCTAACACGAACCAGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCT
ACTCGATCGTGAGGAAGATTATGACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATG
ACCACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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