Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06681
Gene name
Locationscaffold_08:790589..791047
Strand-
Gene length (bp)458
Transcript length (bp)285
Coding sequence length (bp)285
Protein length (aa) 95

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06522 B12D NADH-ubiquinone reductase complex 1 MLRQ subunit 1.3E-05 50 88

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 52 71 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06681
MRSTVALRMFRPTQRMMFRSSPRVMRPLPNEELAGHTISQRLRKLKEIPAELIPLAVVVGFALFAAGYSIVRKIM
TDKNLRLTRSRQPPGRNDH*
Coding >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGAATGAAGAACTGGCAGGCCATACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCC
GAACTGATACCGCTCGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCTACTCGATCGTGAGGAAGATTATG
ACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATGACCACTGA
Transcript >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGAATGAAGAACTGGCAGGCCATACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCC
GAACTGATACCGCTCGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCTACTCGATCGTGAGGAAGATTATG
ACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATGACCACTGA
Gene >Ophcf2|06681
ATGCGCTCGACAGTCGCCCTCAGGATGTTCCGACCGACGCAGCGGATGATGTTTCGTTCGTCGCCTCGAGTCATG
CGCCCTCTTCCGGTGAGTGCATGCCCAGGGATGTGCTTGGAGACTCGGATCTGACGCGCCGGACTAGAATGAAGA
ACTGGCAGGTGGGTAGCTGGAAGCTCTCCGACATTTGATGAATCTTGGGACGCAATCTGATCTCAGTCAAGGCCA
TACCATCTCCCAGCGGCTACGCAAGCTCAAGGAGATCCCGGCCGAACTGATACCGCTCGGTAACCCTACCCGACC
GGCTTCAAATGGCAGCTGCCAAGCGCTAACACGAACCAGCCGTCGTCGTGGGATTCGCCCTTTTTGCTGCTGGCT
ACTCGATCGTGAGGAAGATTATGACGGACAAGAACCTTCGACTCACCAGGTCCCGACAGCCTCCTGGCCGAAATG
ACCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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