Protein ID | Ophcf2|06658 |
Gene name | |
Location | scaffold_08:734969..737957 |
Strand | + |
Gene length (bp) | 2988 |
Transcript length (bp) | 2562 |
Coding sequence length (bp) | 2562 |
Protein length (aa) | 854 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00515 | TPR_1 | Tetratricopeptide repeat | 7.9E-07 | 281 | 313 |
PF00515 | TPR_1 | Tetratricopeptide repeat | 6.4E-08 | 317 | 346 |
PF07719 | TPR_2 | Tetratricopeptide repeat | 3.1E-05 | 210 | 242 |
PF07719 | TPR_2 | Tetratricopeptide repeat | 2.2E-05 | 281 | 311 |
PF07719 | TPR_2 | Tetratricopeptide repeat | 2.0E-05 | 317 | 346 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 1.2E-04 | 210 | 242 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 6.5E-04 | 281 | 313 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.8E-02 | 317 | 346 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 1.8E-02 | 214 | 271 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 2.6E-03 | 265 | 312 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 7.0E-07 | 323 | 384 |
PF13414 | TPR_11 | TPR repeat | 1.7E-06 | 288 | 327 |
PF13174 | TPR_6 | Tetratricopeptide repeat | 2.3E-02 | 213 | 241 |
PF13174 | TPR_6 | Tetratricopeptide repeat | 6.3E-02 | 283 | 308 |
PF13176 | TPR_7 | Tetratricopeptide repeat | 1.2E-02 | 283 | 312 |
PF12895 | ANAPC3 | Anaphase-promoting complex, cyclosome, subunit 3 | 7.7E-08 | 264 | 340 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 62 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|06658 MMQMQHQAQVAPQGVQPGHYASSHQIAAMNEAVWLQIGSFSELLRVPDEAMHAYERALQANPNSAAALNAIGMLL KGREAFDKALEFFRAIVQLEQNNGEAWGNLGHCYLMTENLQKAYDAYQQALVNLRDPKDPMLWYGIGILYDRYGS YDYAEEAFSQVMQIQPEFEKANEIYFRLGIIYKQQSKFNQSLECFKYIVNSPPGPLTQEDIWFQIGHVHEQQKEF ENAKAAYQRVLDHSPNHAKVLQQLGWLHHQQNNSYDTQDRAIQYLEKSVSADNTDAQSWYLLGRCYMSQQKYPKA YEAYQQAVYRDGKNPTFWCSIGVLYYQINQYRDALDAYSRAIRLNPYISEVWYDLGTLYESCNNQIADALDAYQR AAELDPGNPHIKARLQLLRSSNNGAGPPPAPPPADVHPQTYQAAGPSGPVGPQWGGSAQQPPTGGPPPPPAGAGD NWARSLSNVNPPPQPPNPYEGRGEPFRGPPPPPQRQPSPPQEPPMRQQPYPDAMRGGLPRRGMSPASAAHGPYAQ GPPPPPPAMGPAPGDRRVVNPNWGGATPSASAPPSSSANGANPPPNGMAPYRPNHSPRADGRLAHDNRMPSPKSA YPQHQAPPPAYVHHPEAPPQAGPEIGPPPPPTAPEVPAQRLDDRPPSVGPKRIREWEEESASKKQANEENRARLD DLRHRRPSTPPAPRDAYRRSSPEPRRPEDSRRGEEPRKVDDARSQSDGYHPSEAAHHAPPVGPSSLPPMQQQQQQ QQQQQAAGPAQEKSQAGPVLKEERPAAEQTSMPPPQPAAAAAEPERAARKMDVDEDYDDSGEDDKKAVLTNGSTQ GPGSTDGKTTSPTSAGVNGPSGPVAKGE* |
Coding | >Ophcf2|06658 ATGATGCAAATGCAACACCAGGCCCAGGTGGCGCCTCAAGGTGTTCAGCCTGGCCACTACGCCTCGTCGCATCAG ATCGCTGCCATGAATGAGGCCGTCTGGCTGCAGATTGGGAGCTTCTCGGAACTCTTGCGCGTCCCCGACGAGGCC ATGCACGCCTACGAGCGCGCTCTCCAAGCCAATCCTAACTCCGCCGCTGCGCTCAATGCCATCGGCATGCTACTC AAGGGCCGCGAGGCGTTTGACAAGGCTCTCGAGTTCTTTCGTGCCATCGTCCAGTTGGAGCAAAATAACGGGGAG GCGTGGGGAAATCTCGGTCACTGCTATCTTATGACGGAAAATTTGCAAAAAGCATACGACGCCTATCAACAAGCT CTGGTTAACCTAAGAGATCCCAAGGATCCGATGCTCTGGTACGGAATCGGTATCTTATATGACCGCTACGGCAGC TACGACTACGCCGAAGAGGCATTTTCCCAAGTTATGCAAATTCAACCCGAGTTCGAAAAGGCCAACGAGATATAT TTTCGCTTGGGCATCATCTACAAACAGCAATCCAAGTTTAATCAAAGCCTCGAGTGTTTCAAGTACATCGTCAAC TCGCCGCCAGGACCGTTGACTCAGGAGGACATTTGGTTCCAGATTGGTCACGTCCACGAGCAGCAAAAAGAATTT GAAAATGCAAAGGCTGCCTATCAGCGTGTCTTGGATCACTCTCCAAACCATGCCAAGGTTCTTCAGCAGCTCGGC TGGCTTCATCACCAACAGAACAACTCTTACGACACGCAAGATCGGGCCATCCAGTATCTGGAAAAGTCCGTCAGT GCAGATAACACCGACGCCCAGAGCTGGTACTTGCTCGGCCGGTGTTACATGTCGCAGCAAAAGTATCCCAAGGCC TACGAGGCCTACCAGCAGGCTGTTTATCGTGATGGAAAGAATCCGACCTTCTGGTGCTCCATTGGCGTGCTCTAC TACCAGATCAACCAGTATCGCGACGCCCTCGACGCCTACTCCCGCGCCATCAGACTGAATCCGTACATTTCCGAA GTGTGGTACGACCTCGGCACGTTGTATGAATCCTGTAACAACCAAATCGCCGACGCGCTCGATGCGTATCAGAGG GCTGCGGAACTCGACCCCGGGAATCCTCACATCAAGGCTCGTCTACAGCTTCTCCGCTCCAGCAACAACGGCGCC GGCCCGCCCCCTGCGCCTCCGCCGGCCGACGTCCATCCTCAGACGTATCAGGCCGCCGGTCCGTCCGGCCCGGTC GGTCCTCAGTGGGGTGGCTCGGCTCAGCAGCCGCCTACGGGCGGACCGCCTCCGCCACCCGCGGGCGCAGGAGAT AATTGGGCGCGATCGCTTTCCAACGTCAACCCGCCTCCTCAGCCCCCCAATCCTTACGAGGGACGAGGAGAACCC TTCCGCGGGCCCCCGCCTCCTCCGCAACGTCAGCCCAGCCCGCCGCAGGAGCCTCCGATGCGGCAGCAGCCGTAC CCGGACGCCATGAGGGGCGGACTGCCTCGCCGAGGCATGTCTCCGGCTTCGGCCGCACACGGCCCGTACGCGCAG GGACCGCCGCCACCACCCCCCGCGATGGGCCCGGCTCCGGGTGATCGAAGGGTGGTGAACCCCAACTGGGGGGGC GCCACGCCGTCCGCCTCGGCGCCCCCGTCGAGCTCCGCGAACGGGGCCAACCCTCCGCCAAACGGTATGGCTCCT TACCGGCCGAACCACAGCCCTCGTGCTGACGGCCGTCTTGCCCACGACAACCGGATGCCCTCACCCAAGTCGGCG TACCCGCAACACCAAGCCCCACCCCCGGCTTACGTTCATCACCCGGAAGCTCCGCCTCAGGCCGGGCCCGAGATC GGACCGCCCCCGCCCCCCACGGCTCCCGAGGTGCCCGCCCAGCGCCTGGACGATAGGCCGCCTTCGGTCGGCCCC AAGCGGATCCGGGAGTGGGAGGAGGAGTCTGCTTCCAAGAAGCAGGCAAACGAGGAGAACCGCGCGCGGCTCGAT GACTTGAGGCACAGGAGGCCCTCTACCCCCCCGGCTCCTCGTGACGCGTATCGCCGAAGCTCGCCCGAACCGCGG CGGCCTGAAGACTCGCGTCGCGGCGAGGAGCCGCGAAAGGTGGATGACGCACGCTCCCAGAGCGATGGCTACCAC CCATCCGAGGCTGCCCACCATGCACCGCCTGTCGGCCCCAGCTCCTTGCCGCCTATGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGGCGGCTGGCCCGGCGCAGGAGAAGTCGCAGGCCGGGCCAGTCCTTAAGGAGGAGCGGCCC GCGGCGGAGCAGACCTCCATGCCCCCCCCCCAACCGGCGGCGGCGGCGGCGGAGCCCGAGCGGGCGGCGAGGAAG ATGGATGTGGATGAGGATTACGACGACAGCGGCGAGGACGACAAGAAGGCGGTTCTCACCAACGGCTCCACGCAG GGTCCGGGGTCCACGGATGGCAAGACGACATCGCCCACCAGTGCTGGTGTGAATGGTCCTTCTGGTCCCGTTGCC AAGGGCGAGTGA |
Transcript | >Ophcf2|06658 ATGATGCAAATGCAACACCAGGCCCAGGTGGCGCCTCAAGGTGTTCAGCCTGGCCACTACGCCTCGTCGCATCAG ATCGCTGCCATGAATGAGGCCGTCTGGCTGCAGATTGGGAGCTTCTCGGAACTCTTGCGCGTCCCCGACGAGGCC ATGCACGCCTACGAGCGCGCTCTCCAAGCCAATCCTAACTCCGCCGCTGCGCTCAATGCCATCGGCATGCTACTC AAGGGCCGCGAGGCGTTTGACAAGGCTCTCGAGTTCTTTCGTGCCATCGTCCAGTTGGAGCAAAATAACGGGGAG GCGTGGGGAAATCTCGGTCACTGCTATCTTATGACGGAAAATTTGCAAAAAGCATACGACGCCTATCAACAAGCT CTGGTTAACCTAAGAGATCCCAAGGATCCGATGCTCTGGTACGGAATCGGTATCTTATATGACCGCTACGGCAGC TACGACTACGCCGAAGAGGCATTTTCCCAAGTTATGCAAATTCAACCCGAGTTCGAAAAGGCCAACGAGATATAT TTTCGCTTGGGCATCATCTACAAACAGCAATCCAAGTTTAATCAAAGCCTCGAGTGTTTCAAGTACATCGTCAAC TCGCCGCCAGGACCGTTGACTCAGGAGGACATTTGGTTCCAGATTGGTCACGTCCACGAGCAGCAAAAAGAATTT GAAAATGCAAAGGCTGCCTATCAGCGTGTCTTGGATCACTCTCCAAACCATGCCAAGGTTCTTCAGCAGCTCGGC TGGCTTCATCACCAACAGAACAACTCTTACGACACGCAAGATCGGGCCATCCAGTATCTGGAAAAGTCCGTCAGT GCAGATAACACCGACGCCCAGAGCTGGTACTTGCTCGGCCGGTGTTACATGTCGCAGCAAAAGTATCCCAAGGCC TACGAGGCCTACCAGCAGGCTGTTTATCGTGATGGAAAGAATCCGACCTTCTGGTGCTCCATTGGCGTGCTCTAC TACCAGATCAACCAGTATCGCGACGCCCTCGACGCCTACTCCCGCGCCATCAGACTGAATCCGTACATTTCCGAA GTGTGGTACGACCTCGGCACGTTGTATGAATCCTGTAACAACCAAATCGCCGACGCGCTCGATGCGTATCAGAGG GCTGCGGAACTCGACCCCGGGAATCCTCACATCAAGGCTCGTCTACAGCTTCTCCGCTCCAGCAACAACGGCGCC GGCCCGCCCCCTGCGCCTCCGCCGGCCGACGTCCATCCTCAGACGTATCAGGCCGCCGGTCCGTCCGGCCCGGTC GGTCCTCAGTGGGGTGGCTCGGCTCAGCAGCCGCCTACGGGCGGACCGCCTCCGCCACCCGCGGGCGCAGGAGAT AATTGGGCGCGATCGCTTTCCAACGTCAACCCGCCTCCTCAGCCCCCCAATCCTTACGAGGGACGAGGAGAACCC TTCCGCGGGCCCCCGCCTCCTCCGCAACGTCAGCCCAGCCCGCCGCAGGAGCCTCCGATGCGGCAGCAGCCGTAC CCGGACGCCATGAGGGGCGGACTGCCTCGCCGAGGCATGTCTCCGGCTTCGGCCGCACACGGCCCGTACGCGCAG GGACCGCCGCCACCACCCCCCGCGATGGGCCCGGCTCCGGGTGATCGAAGGGTGGTGAACCCCAACTGGGGGGGC GCCACGCCGTCCGCCTCGGCGCCCCCGTCGAGCTCCGCGAACGGGGCCAACCCTCCGCCAAACGGTATGGCTCCT TACCGGCCGAACCACAGCCCTCGTGCTGACGGCCGTCTTGCCCACGACAACCGGATGCCCTCACCCAAGTCGGCG TACCCGCAACACCAAGCCCCACCCCCGGCTTACGTTCATCACCCGGAAGCTCCGCCTCAGGCCGGGCCCGAGATC GGACCGCCCCCGCCCCCCACGGCTCCCGAGGTGCCCGCCCAGCGCCTGGACGATAGGCCGCCTTCGGTCGGCCCC AAGCGGATCCGGGAGTGGGAGGAGGAGTCTGCTTCCAAGAAGCAGGCAAACGAGGAGAACCGCGCGCGGCTCGAT GACTTGAGGCACAGGAGGCCCTCTACCCCCCCGGCTCCTCGTGACGCGTATCGCCGAAGCTCGCCCGAACCGCGG CGGCCTGAAGACTCGCGTCGCGGCGAGGAGCCGCGAAAGGTGGATGACGCACGCTCCCAGAGCGATGGCTACCAC CCATCCGAGGCTGCCCACCATGCACCGCCTGTCGGCCCCAGCTCCTTGCCGCCTATGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGGCGGCTGGCCCGGCGCAGGAGAAGTCGCAGGCCGGGCCAGTCCTTAAGGAGGAGCGGCCC GCGGCGGAGCAGACCTCCATGCCCCCCCCCCAACCGGCGGCGGCGGCGGCGGAGCCCGAGCGGGCGGCGAGGAAG ATGGATGTGGATGAGGATTACGACGACAGCGGCGAGGACGACAAGAAGGCGGTTCTCACCAACGGCTCCACGCAG GGTCCGGGGTCCACGGATGGCAAGACGACATCGCCCACCAGTGCTGGTGTGAATGGTCCTTCTGGTCCCGTTGCC AAGGGCGAGTGA |
Gene | >Ophcf2|06658 ATGATGCAAATGCAACACCAGGCCCAGGTGGCGCCTCAAGGTGTTCAGCCTGGCCACTACGCCTCGTCGCATCAG ATCGCTGCCATGAATGAGGCCGTCTGGCTGCAGATTGGTACCGTCACCGTCCCCTTCTCTCTCGTCTTCACCATG CTGACCCTCTTGTCTTTAGGGAGCTTCTCGGAACTCTTGCGCGTCCCCGACGAGGCCATGCACGCCTACGAGCGC GCTCTCCAAGCCAATCCTAACTCCGCCGCTGCGCTCAATGCCATCGGCATGCTACTCAAGGGCCGCGAGGCGTTT GACAAGGCTCTCGAGTTCTTTCGTGCCATCGTCCAGTTGGAGCAAAATAACGGGGAGGCGTGGGGAAATCTCGGT ATGCATCTTACGGTTGCGTCTGCCCCTTCGTCAATCGTACTCATCCATGACGGCAGGTCACTGCTATCTTATGAC GGAAAATTTGCAAAAAGCATACGACGCCTATCAACAAGCTCTGGTTAACCTAAGAGATCCCAAGGTAATCCGCAT CTCCATTCTCCTTTCTAAATCTACGACTGACTTCTCCCTCGCAGGATCCGATGCTCTGGTACGGAATCGGTATCT TATATGACCGCTACGGCAGCTACGACTACGCCGAAGAGGCATTTTCCCAAGTTATGCAAATTCAACCCGAGTTCG AAAAGGCCAACGAGATATATTTTCGCTTGGGCATCATCTACAAACAGCAATCCAAGTTTAATCAAAGCCTCGAGG TGAGTTGACCTTGCCTCGCTTTCTTCTTGGCTCATGATCGCTGACCCTTCCGCCCCAGTGTTTCAAGTACATCGT CAACTCGCCGCCAGGACCGTTGACTCAGGAGGACATTTGGTTCCAGATTGGTCACGTCCACGAGCAGCAAAAAGA AGTAGGGGTTTTCTCTAGACTTCCCAGCCCCATACGCTTGGCGTCGTGACTGACGGATGTCTGATATCTAGTTTG AAAATGCAAAGGCTGCCTATCAGCGTGTCTTGGATCACTCTCCAAACCATGCCAAGGTTCTTCAGCAGCTCGGCT GGCTTCATCACCAACAGAACAACTCTTACGACACGCAAGATCGGGCCATCCAGTATCTGGAAAAGTCCGTCAGTG CAGGTAAGTCGCTTCACGTCTCCCAGCCGCACATTGTGGCGCCGTAGTTGACCGACTCTTCTCCAGATAACACCG ACGCCCAGAGCTGGTACTTGCTCGGCCGGTGTTACATGTCGCAGCAAAAGTATCCCAAGGCCTACGAGGCCTACC AGCAGGCTGTTTATCGTGATGGAAAGAATCCGACCTTCTGGTGCTCCATTGGCGTGCTCTACTACCAGATCAACC AGTATCGCGACGCCCTCGACGCCTACTCCCGCGCCATCAGACTGAATCCGTACATTTCCGAAGTGTGGTACGACC TCGGCACGTTGGTAAGTCGATTTCCCTGTTGTCTTCTCATCTTGTCTCTTATCAGGGGGGCTGACTTTGCCTCAG TATGAATCCTGTAACAACCAAATCGCCGACGCGCTCGATGCGTATCAGAGGGCTGCGGAACTCGACCCCGGGAAT CCTCACATCAAGGCTCGTCTACAGCTTCTCCGCTCCAGCAACAACGGCGCCGGCCCGCCCCCTGCGCCTCCGCCG GCCGACGTCCATCCTCAGACGTATCAGGCCGCCGGTCCGTCCGGCCCGGTCGGTCCTCAGTGGGGTGGCTCGGCT CAGCAGCCGCCTACGGGCGGACCGCCTCCGCCACCCGCGGGCGCAGGAGATAATTGGGCGCGATCGCTTTCCAAC GTCAACCCGCCTCCTCAGCCCCCCAATCCTTACGAGGGACGAGGAGAACCCTTCCGCGGGCCCCCGCCTCCTCCG CAACGTCAGCCCAGCCCGCCGCAGGAGCCTCCGATGCGGCAGCAGCCGTACCCGGACGCCATGAGGGGCGGACTG CCTCGCCGAGGCATGTCTCCGGCTTCGGCCGCACACGGCCCGTACGCGCAGGGACCGCCGCCACCACCCCCCGCG ATGGGCCCGGCTCCGGGTGATCGAAGGGTGGTGAACCCCAACTGGGGGGGCGCCACGCCGTCCGCCTCGGCGCCC CCGTCGAGCTCCGCGAACGGGGCCAACCCTCCGCCAAACGGTATGGCTCCTTACCGGCCGAACCACAGCCCTCGT GCTGACGGCCGTCTTGCCCACGACAACCGGATGCCCTCACCCAAGTCGGCGTACCCGCAACACCAAGCCCCACCC CCGGCTTACGTTCATCACCCGGAAGCTCCGCCTCAGGCCGGGCCCGAGATCGGACCGCCCCCGCCCCCCACGGCT CCCGAGGTGCCCGCCCAGCGCCTGGACGATAGGCCGCCTTCGGTCGGCCCCAAGCGGATCCGGGAGTGGGAGGAG GAGTCTGCTTCCAAGAAGCAGGCAAACGAGGAGAACCGCGCGCGGCTCGATGACTTGAGGCACAGGAGGCCCTCT ACCCCCCCGGCTCCTCGTGACGCGTATCGCCGAAGCTCGCCCGAACCGCGGCGGCCTGAAGACTCGCGTCGCGGC GAGGAGCCGCGAAAGGTGGATGACGCACGCTCCCAGAGCGATGGCTACCACCCATCCGAGGCTGCCCACCATGCA CCGCCTGTCGGCCCCAGCTCCTTGCCGCCTATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGCTGGC CCGGCGCAGGAGAAGTCGCAGGCCGGGCCAGTCCTTAAGGAGGAGCGGCCCGCGGCGGAGCAGACCTCCATGCCC CCCCCCCAACCGGCGGCGGCGGCGGCGGAGCCCGAGCGGGCGGCGAGGAAGATGGATGTGGATGAGGATTACGAC GACAGCGGCGAGGACGACAAGAAGGCGGTTCTCACCAACGGCTCCACGCAGGGTCCGGGGTCCACGGATGGCAAG ACGACATCGCCCACCAGTGCTGGTGTGAATGGTCCTTCTGGTCCCGTTGCCAAGGGCGAGTGA |