© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06557 |
| Gene name | |
| Location | scaffold_08:424898..425654 |
| Strand | - |
| Gene length (bp) | 756 |
| Transcript length (bp) | 573 |
| Coding sequence length (bp) | 573 |
| Protein length (aa) | 191 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03248 | Rer1 | Rer1 family | 9.7E-78 | 17 | 186 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 141 | 163 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 230.70 | 132.58 | 328.82 |
| Alive | In ants, during behavior modification | 370.01 | 201.89 | 538.12 |
| Dead | In ants, recently dead | 219.92 | 126.00 | 313.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.010258 | yes |
| Alive | Dead | 0.001226 | yes |
| Dead | Fungus | 0.839818 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06557 MDASESEQTAFASVTAQTSKLQRHYQAVLDRSTPFVLYRWFGTGVLLIFFFLRILFAQGWYIVAYALGIYLLNLF LAFLQPKFDPSNDALDNEMEDGAVGTLPTKQDEEFKPFIRRLPEFKFWYWATRAVVISFTCTFFELFNVPVFWPV LVMYWIILFVLTMRKQIQHMVKYRYVPFTIGKKNYNKNSP* |
| Coding | >Ophcf2|06557 ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGCATTAC CAGGCGGTCCTGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTC TTTCTGCGTATTCTCTTCGCGCAGGGGTGGTATATCGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTC CTCGCCTTCCTGCAGCCCAAGTTCGACCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGG ACGCTGCCGACGAAGCAAGACGAAGAGTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGG GCTACGCGCGCCGTCGTCATCTCCTTTACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTT CTCGTCATGTACTGGATCATCCTCTTCGTCTTGACCATGCGCAAGCAGATCCAACACATGGTCAAATACCGCTAC GTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGCCCCTAA |
| Transcript | >Ophcf2|06557 ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGCATTAC CAGGCGGTCCTGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTC TTTCTGCGTATTCTCTTCGCGCAGGGGTGGTATATCGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTC CTCGCCTTCCTGCAGCCCAAGTTCGACCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGG ACGCTGCCGACGAAGCAAGACGAAGAGTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGG GCTACGCGCGCCGTCGTCATCTCCTTTACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTT CTCGTCATGTACTGGATCATCCTCTTCGTCTTGACCATGCGCAAGCAGATCCAACACATGGTCAAATACCGCTAC GTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGCCCCTAA |
| Gene | >Ophcf2|06557 ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGGTACGA CGAACGATGATGGTGGTCGGGAGCCCGGCTTTCGGCCTGTGCTGACGGCAACGATGCAGCATTACCAGGCGGTCC TGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTCTTTCTGCGTA TTCTCTTCGCGCAGGGGTGGTATATCGGTGCGTGTTTCTTCCCAGGTATTCGAGCAGCACCGATGCCGCTGACGA CGTGAGCCAAGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTCCTCGCCTTCCTGCAGCCCAAGTTCGA CCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGGACGCTGCCGACGAAGCAAGACGAAGA GTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGGGCTACGCGCGCCGTCGTCATCTCCTT TACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTTCTCGTCATGTACTGGATCATCCTCTT CGTCTTGACCAGTACGTGTTTCCTCCCCCGGTCTTCGCCAGCTGATGAAGGCTGACTCGCTCCTCGGCAGTGCGC AAGCAGATCCAACACATGGTCAAATACCGCTACGTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGC CCCTAA |