Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06557
Gene name
Locationscaffold_08:424898..425654
Strand-
Gene length (bp)756
Transcript length (bp)573
Coding sequence length (bp)573
Protein length (aa) 191

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03248 Rer1 Rer1 family 9.7E-78 17 186

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.5

Transmembrane Domains

Domain # Start End Length
1 35 57 22
2 59 81 22
3 141 163 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06557
MDASESEQTAFASVTAQTSKLQRHYQAVLDRSTPFVLYRWFGTGVLLIFFFLRILFAQGWYIVAYALGIYLLNLF
LAFLQPKFDPSNDALDNEMEDGAVGTLPTKQDEEFKPFIRRLPEFKFWYWATRAVVISFTCTFFELFNVPVFWPV
LVMYWIILFVLTMRKQIQHMVKYRYVPFTIGKKNYNKNSP*
Coding >Ophcf2|06557
ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGCATTAC
CAGGCGGTCCTGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTC
TTTCTGCGTATTCTCTTCGCGCAGGGGTGGTATATCGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTC
CTCGCCTTCCTGCAGCCCAAGTTCGACCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGG
ACGCTGCCGACGAAGCAAGACGAAGAGTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGG
GCTACGCGCGCCGTCGTCATCTCCTTTACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTT
CTCGTCATGTACTGGATCATCCTCTTCGTCTTGACCATGCGCAAGCAGATCCAACACATGGTCAAATACCGCTAC
GTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGCCCCTAA
Transcript >Ophcf2|06557
ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGCATTAC
CAGGCGGTCCTGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTC
TTTCTGCGTATTCTCTTCGCGCAGGGGTGGTATATCGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTC
CTCGCCTTCCTGCAGCCCAAGTTCGACCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGG
ACGCTGCCGACGAAGCAAGACGAAGAGTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGG
GCTACGCGCGCCGTCGTCATCTCCTTTACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTT
CTCGTCATGTACTGGATCATCCTCTTCGTCTTGACCATGCGCAAGCAGATCCAACACATGGTCAAATACCGCTAC
GTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGCCCCTAA
Gene >Ophcf2|06557
ATGGACGCGTCCGAGTCGGAACAGACGGCCTTTGCCAGCGTTACGGCGCAGACGTCCAAGCTCCAGAGGGTACGA
CGAACGATGATGGTGGTCGGGAGCCCGGCTTTCGGCCTGTGCTGACGGCAACGATGCAGCATTACCAGGCGGTCC
TGGACCGGTCCACGCCCTTTGTGCTGTACCGATGGTTCGGCACGGGCGTCTTGTTGATCTTCTTCTTTCTGCGTA
TTCTCTTCGCGCAGGGGTGGTATATCGGTGCGTGTTTCTTCCCAGGTATTCGAGCAGCACCGATGCCGCTGACGA
CGTGAGCCAAGTGGCCTATGCCCTCGGCATCTACCTCCTCAACCTTTTCCTCGCCTTCCTGCAGCCCAAGTTCGA
CCCGTCGAATGACGCGCTCGATAACGAGATGGAGGATGGGGCGGTCGGGACGCTGCCGACGAAGCAAGACGAAGA
GTTCAAGCCCTTTATCCGCCGTCTGCCCGAGTTCAAATTCTGGTACTGGGCTACGCGCGCCGTCGTCATCTCCTT
TACCTGCACCTTCTTCGAACTCTTCAACGTGCCCGTCTTCTGGCCCGTTCTCGTCATGTACTGGATCATCCTCTT
CGTCTTGACCAGTACGTGTTTCCTCCCCCGGTCTTCGCCAGCTGATGAAGGCTGACTCGCTCCTCGGCAGTGCGC
AAGCAGATCCAACACATGGTCAAATACCGCTACGTGCCCTTCACCATCGGCAAGAAGAACTACAACAAGAACAGC
CCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail