© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06555 |
| Gene name | |
| Location | scaffold_08:420871..423083 |
| Strand | + |
| Gene length (bp) | 2212 |
| Transcript length (bp) | 1824 |
| Coding sequence length (bp) | 1824 |
| Protein length (aa) | 608 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00999 | Na_H_Exchanger | Sodium/hydrogen exchanger family | 2.2E-52 | 22 | 452 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0015299 | solute:proton antiporter activity | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015298 | solute:cation antiporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0015297 | antiporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 45 | 64 | 19 |
| 3 | 121 | 143 | 22 |
| 4 | 148 | 170 | 22 |
| 5 | 197 | 219 | 22 |
| 6 | 229 | 251 | 22 |
| 7 | 271 | 290 | 19 |
| 8 | 324 | 343 | 19 |
| 9 | 355 | 377 | 22 |
| 10 | 387 | 409 | 22 |
| 11 | 434 | 456 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 21.12 | 10.87 | 31.37 |
| Alive | In ants, during behavior modification | 5.38 | 1.72 | 9.05 |
| Dead | In ants, recently dead | 6.40 | 2.34 | 10.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.531190 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06555 MTQKKVWAIPLELSNYNVIVALLGGFISLFGLVSFLLKENFYLSESLISLLAGLAFGPLGANLIRPGAYVQCDDT AIPDVRCEASLNHITLNFSRLVLAIQLVLAGVQLPRKYLWKEYKPILLLIGPGMTCMWLATSLLVWGLADTPGIL QALAIGACVTPTDPVLSAVIIKGKFANENVPKDLQDLVVAESGANDGLGYPFLFLALYLIKFLGPTASSGGAREA MGLWFAMTWSYTILLSIIFGAVVGYLAKELLRWAKERGYVDREAFTVFSIALALFVFGTCGLIGTDDLLACFIAG NAFTWDDWFRVQTLDDSLQPTMDMLLNVSIFLWYGASLPWNLFSQNSVISTGRLVALGLLVLLLRRLPWIYCLHW WIPQLRNAKRAVFVGFFGPMGVSAVFYLLISLNFIDDHLSDETGQPRSDVKNFGETMRVVVWFLVVCSTLVHGLS IPLGRVGYVAPKRIMHVFKRRSSDEPLRVEARSKIPVIGRYISRSASVTVDAWRPWTALELRVLRPVHWGPDRST RTVDGSTAGSGSATPIGKNNFVVVDLAARAKSVFSVQPATNSEKGNSAAINLPTGAGLNHYGASQANISATSLNV SVIQLPN* |
| Coding | >Ophcf2|06555 ATGACGCAAAAAAAGGTTTGGGCGATTCCGCTCGAGTTATCCAATTACAACGTCATCGTCGCCCTGCTTGGTGGC TTCATCTCATTGTTCGGATTGGTATCTTTTCTATTAAAGGAGAATTTCTATCTTTCCGAGTCTCTCATCTCTCTC CTGGCGGGTCTCGCCTTCGGGCCGCTGGGCGCAAACTTGATTCGTCCTGGAGCCTATGTTCAGTGCGATGACACG GCCATCCCGGACGTCAGGTGCGAGGCCAGCCTCAACCACATCACCCTCAACTTCTCTCGCCTTGTTCTCGCCATT CAGCTTGTTCTGGCGGGAGTTCAGCTGCCTAGGAAATACCTGTGGAAAGAATACAAGCCCATCTTGTTGCTCATC GGTCCTGGAATGACGTGCATGTGGCTCGCTACGAGCCTGCTGGTCTGGGGCCTTGCAGATACACCTGGCATTCTA CAGGCCTTGGCTATCGGTGCCTGCGTCACGCCAACGGACCCTGTCCTCTCGGCTGTGATCATCAAGGGCAAGTTT GCCAACGAGAATGTCCCCAAGGACCTTCAGGATCTAGTCGTCGCGGAGTCTGGGGCAAACGACGGGCTCGGCTAC CCGTTCTTGTTTCTTGCCCTGTATCTCATCAAGTTCCTCGGCCCGACAGCCTCATCTGGCGGCGCTAGAGAGGCC ATGGGCCTCTGGTTCGCCATGACGTGGTCGTATACGATTCTACTAAGCATAATCTTTGGCGCCGTGGTGGGTTAT CTAGCCAAGGAGCTGCTCCGTTGGGCCAAAGAACGGGGTTACGTCGACCGCGAAGCCTTTACCGTCTTCTCTATA GCCCTCGCTCTCTTCGTCTTTGGGACATGCGGCTTGATCGGCACCGACGATCTTCTCGCCTGCTTCATCGCCGGC AATGCCTTTACGTGGGACGACTGGTTTCGGGTACAGACGCTGGACGACTCTCTTCAGCCGACGATGGATATGCTG CTCAACGTATCCATCTTTCTCTGGTACGGGGCGTCGCTCCCCTGGAACCTGTTTAGCCAAAACTCGGTCATTTCC ACCGGCCGTCTCGTCGCTCTCGGCCTGCTCGTGCTGCTTCTTCGACGGCTTCCGTGGATCTACTGCTTACACTGG TGGATTCCCCAGCTTCGGAACGCCAAAAGGGCCGTCTTTGTCGGCTTTTTTGGTCCTATGGGCGTCTCGGCCGTC TTTTACCTACTCATCTCTCTGAACTTCATCGACGATCATCTGAGCGATGAGACGGGACAGCCTAGGAGTGACGTG AAGAATTTTGGCGAAACCATGCGTGTTGTCGTTTGGTTTCTCGTCGTCTGTAGTACGTTGGTCCACGGACTTAGC ATCCCGCTCGGGAGAGTGGGATACGTGGCTCCCAAGAGGATTATGCACGTTTTCAAGCGGAGGTCAAGCGATGAG CCGCTGAGGGTCGAGGCTCGAAGTAAGATACCCGTCATTGGGAGATACATAAGCAGAAGCGCGAGTGTCACGGTC GATGCCTGGCGTCCCTGGACGGCGTTGGAGCTTCGCGTGTTGCGCCCGGTTCATTGGGGACCTGATCGCTCGACT CGGACGGTTGACGGCTCTACGGCTGGGTCGGGGTCTGCGACGCCAATTGGAAAGAATAACTTCGTTGTCGTTGAT CTGGCCGCTAGAGCCAAAAGCGTCTTCAGCGTTCAGCCGGCCACGAACAGCGAGAAGGGGAACAGTGCTGCTATC AATCTCCCTACAGGAGCTGGACTCAACCATTATGGTGCTAGCCAGGCGAATATTTCCGCAACGAGCCTCAACGTC TCCGTTATTCAACTACCTAATTGA |
| Transcript | >Ophcf2|06555 ATGACGCAAAAAAAGGTTTGGGCGATTCCGCTCGAGTTATCCAATTACAACGTCATCGTCGCCCTGCTTGGTGGC TTCATCTCATTGTTCGGATTGGTATCTTTTCTATTAAAGGAGAATTTCTATCTTTCCGAGTCTCTCATCTCTCTC CTGGCGGGTCTCGCCTTCGGGCCGCTGGGCGCAAACTTGATTCGTCCTGGAGCCTATGTTCAGTGCGATGACACG GCCATCCCGGACGTCAGGTGCGAGGCCAGCCTCAACCACATCACCCTCAACTTCTCTCGCCTTGTTCTCGCCATT CAGCTTGTTCTGGCGGGAGTTCAGCTGCCTAGGAAATACCTGTGGAAAGAATACAAGCCCATCTTGTTGCTCATC GGTCCTGGAATGACGTGCATGTGGCTCGCTACGAGCCTGCTGGTCTGGGGCCTTGCAGATACACCTGGCATTCTA CAGGCCTTGGCTATCGGTGCCTGCGTCACGCCAACGGACCCTGTCCTCTCGGCTGTGATCATCAAGGGCAAGTTT GCCAACGAGAATGTCCCCAAGGACCTTCAGGATCTAGTCGTCGCGGAGTCTGGGGCAAACGACGGGCTCGGCTAC CCGTTCTTGTTTCTTGCCCTGTATCTCATCAAGTTCCTCGGCCCGACAGCCTCATCTGGCGGCGCTAGAGAGGCC ATGGGCCTCTGGTTCGCCATGACGTGGTCGTATACGATTCTACTAAGCATAATCTTTGGCGCCGTGGTGGGTTAT CTAGCCAAGGAGCTGCTCCGTTGGGCCAAAGAACGGGGTTACGTCGACCGCGAAGCCTTTACCGTCTTCTCTATA GCCCTCGCTCTCTTCGTCTTTGGGACATGCGGCTTGATCGGCACCGACGATCTTCTCGCCTGCTTCATCGCCGGC AATGCCTTTACGTGGGACGACTGGTTTCGGGTACAGACGCTGGACGACTCTCTTCAGCCGACGATGGATATGCTG CTCAACGTATCCATCTTTCTCTGGTACGGGGCGTCGCTCCCCTGGAACCTGTTTAGCCAAAACTCGGTCATTTCC ACCGGCCGTCTCGTCGCTCTCGGCCTGCTCGTGCTGCTTCTTCGACGGCTTCCGTGGATCTACTGCTTACACTGG TGGATTCCCCAGCTTCGGAACGCCAAAAGGGCCGTCTTTGTCGGCTTTTTTGGTCCTATGGGCGTCTCGGCCGTC TTTTACCTACTCATCTCTCTGAACTTCATCGACGATCATCTGAGCGATGAGACGGGACAGCCTAGGAGTGACGTG AAGAATTTTGGCGAAACCATGCGTGTTGTCGTTTGGTTTCTCGTCGTCTGTAGTACGTTGGTCCACGGACTTAGC ATCCCGCTCGGGAGAGTGGGATACGTGGCTCCCAAGAGGATTATGCACGTTTTCAAGCGGAGGTCAAGCGATGAG CCGCTGAGGGTCGAGGCTCGAAGTAAGATACCCGTCATTGGGAGATACATAAGCAGAAGCGCGAGTGTCACGGTC GATGCCTGGCGTCCCTGGACGGCGTTGGAGCTTCGCGTGTTGCGCCCGGTTCATTGGGGACCTGATCGCTCGACT CGGACGGTTGACGGCTCTACGGCTGGGTCGGGGTCTGCGACGCCAATTGGAAAGAATAACTTCGTTGTCGTTGAT CTGGCCGCTAGAGCCAAAAGCGTCTTCAGCGTTCAGCCGGCCACGAACAGCGAGAAGGGGAACAGTGCTGCTATC AATCTCCCTACAGGAGCTGGACTCAACCATTATGGTGCTAGCCAGGCGAATATTTCCGCAACGAGCCTCAACGTC TCCGTTATTCAACTACCTAATTGA |
| Gene | >Ophcf2|06555 ATGACGCAAAAAAAGGTTTGGGCGATTCCGCTCGAGTTATCCAATTACAACGTCATCGTCGCCCTGCTTGGTGGC TTCATCTCATTGTTCGGATTGGTATCTTTTCTATTAAAGGAGAATTTCTATCTTTCCGAGTCTCGTAAGTCTTCA ATGTCTCGATGCAACGTCGGCGTTCAATCACCTCCTACCTATTGTGAGTGACATGGTTGCTGACCTCTGCGTCGC AGTCATCTCTCTCCTGGCGGGTCTCGCCTTCGGGCCGCTGGGCGCAAACTTGATTCGTCCTGGAGCCTATGTTCA GTGCGATGACACGGCCATCCCGGACGTCAGGTGCGAGGCCAGCCTCAACCACATCACCCTCAACTTCTCTCGCCT TGTTCTCGCCATTCAGCTTGTTCTGGCGGGAGTTCAGCTGCCTAGGAAATACCTGTGGAAAGAATACAAGCCCAT CTTGTTGCTCATCGGTCCTGGAATGACGTGCATGTGGCTCGCTACGAGCCTGCTGGTCTGGGGCCTTGCAGATAC ACCTGGCATTCTACAGGCCTTGGCTATCGGTGCCTGCGTCACGCCAACGGACCCTGTCCTCTCGGCTGTGATCAT CAAGGGCAAGTTTGCCAACGAGAATGTCCCCAAGGACCTTCAGGATCTAGTCGTCGCGGAGTCTGGGGCAAACGA CGGGCTCGGCTACCCGTTCTTGTTTCTTGCCCTGTATCTCATCAAGTTCCTCGGCCCGACAGCCTCATCTGGCGG CGCTAGAGAGGCCATGGGCCTCTGGTTCGCCATGACGTGGTCGTATACGATTCTACTAAGCATAATCTTTGGCGC CGTGGTGGGTTATCTAGCCAAGGAGCTGCTCCGTTGGGCCAAAGAACGGGGTTACGTCGACCGCGAAGCCTTTAC CGTCTTCTCTATAGCCCTCGCTCTCTTCGTCTTTGGGACATGCGGCTTGATCGGCACCGACGATCTTCTCGCCTG CTTCATCGCCGGCAATGCCTTTACGTGGGACGACTGGTTTCGGGTACAGACGCTGGACGACTCTCTTCAGCCGAC GATGGATATGCTGCTCAACGTATCCATCTTTCTCTGGTACGGGGCGTCGCTCCCCTGGAACCTGTTTAGCCAAAA CTCGGTCATTTCCACCGGCCGTCTCGTCGCTCTCGGCCTGCTCGTGCTGCTTCTTCGACGGCTTCCGTGGATCTA CTGCTTACACTGGTGGATTCCCCAGCTTCGGAACGCCAAAAGGGCCGTCTTTGTCGGCTTTTTTGGTCCTATGGG CGTCTCGGCCGTCTTTTACCTACTCATCTCTCTGAACTTCATCGACGATCATCTGAGCGATGAGACGGGACAGCC TAGGAGTGACGTGAAGAATTTTGGCGAAACCATGCGTGTTGTCGTTTGGTTTCTCGTCGTCTGTAGTACGGTGAG TGATTTCCTTCGGGTGGTCTTCCCCCCTTTTTCACTAATTGCGACGCTGTTTTAACATTTGACCGTGATAGTTGG TCCACGGACTTAGCATCCCGCTCGGGAGAGTGGGATACGTGGCTCCCAAGAGGATTATGCACGTTTTCAAGCGGA GGTCAAGCGATGAGCCGCTGAGGGTCGAGGCTCGAAGTAAGATACCCGTCATTGGGAGATACATAAGCAGAAGCG CGAGTGTCACGGTCGATGCCTGGCGTCCCTGGACGGCGTTGGAGCTTCGCGTGTTGCGCCCGGTTCATTGGGGAC CTGATCGCTCGACTCGGACGGTTGACGGCTCTACGGCTGGGTCGGGGTCTGCGACGCCAGTTTGGCGACGGAGTG GAAGTAGGGCTTCTGATGAGACTCGGGTGGGAGGTGGTGATAGAATGGTACGGAGGGAAGGTGATGAATGATGAT GAAAATGAAGGATGATGAGGAGGAAAAGGTAAATGAAATGGATGACTGAATGACGAGCGAGGGTTGACCTGAGAG ATTGGAAAGGTATGTAACGACAAAGACGCACGTTGCGTGTGGACATTCAACTTACAGCATGGCTTAGAATAACTT CGTTGTCGTTGATCTGGCCGCTAGAGCCAAAAGCGTCTTCAGCGTTCAGCCGGCCACGAACAGCGAGAAGGGGAA CAGTGCTGCTATCAATCTCCCTACAGGAGCTGGACTCAACCATTATGGTGCTAGCCAGGCGAATATTTCCGCAAC GAGCCTCAACGTCTCCGTTATTCAACTACCTAATTGA |