© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06552 |
| Gene name | |
| Location | scaffold_08:413180..414600 |
| Strand | - |
| Gene length (bp) | 1420 |
| Transcript length (bp) | 1353 |
| Coding sequence length (bp) | 1353 |
| Protein length (aa) | 451 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01733 | Nucleoside_tran | Nucleoside transporter | 6.3E-42 | 142 | 447 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005337 | nucleoside transmembrane transporter activity | Yes |
| GO:1901642 | nucleoside transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| GO:1901264 | carbohydrate derivative transport | No |
| GO:0071702 | organic substance transport | No |
| GO:1901505 | carbohydrate derivative transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0003674 | molecular_function | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0015858 | nucleoside transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0015932 | nucleobase-containing compound transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| 2 | 73 | 92 | 19 |
| 3 | 105 | 127 | 22 |
| 4 | 137 | 159 | 22 |
| 5 | 172 | 194 | 22 |
| 6 | 220 | 242 | 22 |
| 7 | 284 | 306 | 22 |
| 8 | 356 | 375 | 19 |
| 9 | 388 | 410 | 22 |
| 10 | 425 | 447 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 48.21 | 26.82 | 69.60 |
| Alive | In ants, during behavior modification | 42.94 | 23.29 | 62.59 |
| Dead | In ants, recently dead | 44.14 | 24.29 | 64.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.617813 | no |
| Alive | Dead | 0.900420 | no |
| Dead | Fungus | 0.704407 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06552 MEGSRTAYRRLGTDMDDDDAGSVVTEGPPFSWLEYAIFGFLGVAMLWAWNMFLAAAPYFSSRFAADAWIEANFQS AILASSTLVNLGTLVVLTKLQREASYTFRINLALVINTLVFALLTCSTALFLDASPSSYLAFLLLVVAAASWATG LSQNGCFAFAASFGRPEYTQAIMAGQSVAGVLPAVAQVITVLLFPPKQHRATVGDGHGREDVPAKGQTSAFVYFL TAVAISVAALLALATLVRRHRALLENSRLLPDGMEASVNSIQDAERASRKVATLWHLFVKLRWLALGVALTFAAT MFFPVFTTKTLSVHPDAAPLFRPAAFIPLAFLCWNLGDLVGRVLAVLPLSLRHRPFYLFVLSVIRIGQLPLYLLC NIGGRGASVPSDFFYLVIVQLLFGLTNGWLGSSFMMAAGEWVEPGEREAAGAFMGLCLVVGLALGSFLSFTIADI * |
| Coding | >Ophcf2|06552 ATGGAAGGCTCAAGAACCGCTTACCGGCGTCTGGGCACCGACATGGACGACGATGACGCCGGCTCCGTCGTCACC GAAGGGCCGCCCTTCTCATGGCTCGAGTACGCCATCTTTGGCTTCCTCGGCGTCGCCATGCTCTGGGCCTGGAAC ATGTTCCTCGCCGCCGCGCCCTACTTCTCGTCTCGGTTCGCAGCCGACGCCTGGATAGAAGCCAACTTCCAGTCC GCCATCCTCGCATCCTCTACGCTCGTCAACCTCGGCACCCTTGTCGTTCTCACGAAGCTACAGCGCGAGGCCTCG TACACGTTCCGCATCAATCTAGCTCTCGTCATCAACACTCTCGTCTTCGCCCTCCTCACCTGCTCGACCGCTCTC TTCCTCGACGCCTCCCCCTCGTCCTATCTCGCCTTTCTTCTCCTCGTCGTCGCCGCCGCTTCTTGGGCGACCGGC CTCAGTCAAAATGGTTGTTTTGCCTTTGCCGCCAGCTTCGGTCGGCCAGAGTACACGCAGGCGATCATGGCCGGC CAGAGCGTCGCCGGCGTCCTCCCCGCCGTCGCCCAGGTCATCACCGTTCTACTCTTCCCGCCCAAGCAACACCGT GCTACCGTCGGCGACGGCCATGGCCGTGAAGACGTACCTGCCAAGGGACAGACGTCGGCCTTTGTCTATTTCCTC ACCGCCGTCGCCATCTCCGTCGCTGCCCTCTTGGCGCTTGCCACTCTCGTGCGGAGACACCGCGCCCTTCTCGAA AACAGTCGGCTCTTGCCCGACGGCATGGAAGCCTCCGTCAACAGCATCCAAGACGCCGAGCGAGCCTCCCGCAAG GTGGCGACGCTATGGCACCTCTTCGTCAAGCTCCGCTGGCTCGCGCTTGGCGTCGCACTCACATTTGCCGCCACC ATGTTCTTCCCCGTCTTTACTACCAAGACGCTCTCCGTCCATCCAGACGCCGCTCCGCTCTTCCGCCCTGCCGCC TTCATCCCGCTCGCCTTCCTGTGCTGGAACCTTGGCGACCTGGTCGGCAGGGTCCTCGCCGTCCTACCTTTATCG CTGCGGCACCGACCCTTTTACCTCTTCGTTCTCTCCGTCATCCGCATCGGCCAGTTGCCGCTCTACCTGCTCTGC AATATTGGCGGCCGGGGCGCCTCGGTCCCCAGCGACTTCTTCTATCTCGTCATCGTCCAGCTCTTGTTCGGCCTG ACCAATGGCTGGCTGGGCTCGAGCTTCATGATGGCTGCCGGTGAATGGGTCGAGCCGGGGGAGCGTGAGGCCGCC GGTGCCTTTATGGGCCTCTGTCTAGTCGTCGGCTTGGCCTTGGGCAGCTTCCTGAGCTTTACCATCGCCGACATC TAA |
| Transcript | >Ophcf2|06552 ATGGAAGGCTCAAGAACCGCTTACCGGCGTCTGGGCACCGACATGGACGACGATGACGCCGGCTCCGTCGTCACC GAAGGGCCGCCCTTCTCATGGCTCGAGTACGCCATCTTTGGCTTCCTCGGCGTCGCCATGCTCTGGGCCTGGAAC ATGTTCCTCGCCGCCGCGCCCTACTTCTCGTCTCGGTTCGCAGCCGACGCCTGGATAGAAGCCAACTTCCAGTCC GCCATCCTCGCATCCTCTACGCTCGTCAACCTCGGCACCCTTGTCGTTCTCACGAAGCTACAGCGCGAGGCCTCG TACACGTTCCGCATCAATCTAGCTCTCGTCATCAACACTCTCGTCTTCGCCCTCCTCACCTGCTCGACCGCTCTC TTCCTCGACGCCTCCCCCTCGTCCTATCTCGCCTTTCTTCTCCTCGTCGTCGCCGCCGCTTCTTGGGCGACCGGC CTCAGTCAAAATGGTTGTTTTGCCTTTGCCGCCAGCTTCGGTCGGCCAGAGTACACGCAGGCGATCATGGCCGGC CAGAGCGTCGCCGGCGTCCTCCCCGCCGTCGCCCAGGTCATCACCGTTCTACTCTTCCCGCCCAAGCAACACCGT GCTACCGTCGGCGACGGCCATGGCCGTGAAGACGTACCTGCCAAGGGACAGACGTCGGCCTTTGTCTATTTCCTC ACCGCCGTCGCCATCTCCGTCGCTGCCCTCTTGGCGCTTGCCACTCTCGTGCGGAGACACCGCGCCCTTCTCGAA AACAGTCGGCTCTTGCCCGACGGCATGGAAGCCTCCGTCAACAGCATCCAAGACGCCGAGCGAGCCTCCCGCAAG GTGGCGACGCTATGGCACCTCTTCGTCAAGCTCCGCTGGCTCGCGCTTGGCGTCGCACTCACATTTGCCGCCACC ATGTTCTTCCCCGTCTTTACTACCAAGACGCTCTCCGTCCATCCAGACGCCGCTCCGCTCTTCCGCCCTGCCGCC TTCATCCCGCTCGCCTTCCTGTGCTGGAACCTTGGCGACCTGGTCGGCAGGGTCCTCGCCGTCCTACCTTTATCG CTGCGGCACCGACCCTTTTACCTCTTCGTTCTCTCCGTCATCCGCATCGGCCAGTTGCCGCTCTACCTGCTCTGC AATATTGGCGGCCGGGGCGCCTCGGTCCCCAGCGACTTCTTCTATCTCGTCATCGTCCAGCTCTTGTTCGGCCTG ACCAATGGCTGGCTGGGCTCGAGCTTCATGATGGCTGCCGGTGAATGGGTCGAGCCGGGGGAGCGTGAGGCCGCC GGTGCCTTTATGGGCCTCTGTCTAGTCGTCGGCTTGGCCTTGGGCAGCTTCCTGAGCTTTACCATCGCCGACATC TAA |
| Gene | >Ophcf2|06552 ATGGAAGGCTCAAGAACCGCTTACCGGCGTCTGGGCACCGACATGGACGACGATGACGCCGGCTCCGTCGTCACC GAAGGGCCGCCCTTCTCATGGCTCGAGTACGCCATCTTTGGCTTCCTCGGCGTCGCCATGCTCTGGGCCTGGTTC GTCTCTCCCTTCTCCTGATCAAAGAAGGCGGAGGGAGACCTCTTCTGACGTCGGCGTCACCAGGAACATGTTCCT CGCCGCCGCGCCCTACTTCTCGTCTCGGTTCGCAGCCGACGCCTGGATAGAAGCCAACTTCCAGTCCGCCATCCT CGCATCCTCTACGCTCGTCAACCTCGGCACCCTTGTCGTTCTCACGAAGCTACAGCGCGAGGCCTCGTACACGTT CCGCATCAATCTAGCTCTCGTCATCAACACTCTCGTCTTCGCCCTCCTCACCTGCTCGACCGCTCTCTTCCTCGA CGCCTCCCCCTCGTCCTATCTCGCCTTTCTTCTCCTCGTCGTCGCCGCCGCTTCTTGGGCGACCGGCCTCAGTCA AAATGGTTGTTTTGCCTTTGCCGCCAGCTTCGGTCGGCCAGAGTACACGCAGGCGATCATGGCCGGCCAGAGCGT CGCCGGCGTCCTCCCCGCCGTCGCCCAGGTCATCACCGTTCTACTCTTCCCGCCCAAGCAACACCGTGCTACCGT CGGCGACGGCCATGGCCGTGAAGACGTACCTGCCAAGGGACAGACGTCGGCCTTTGTCTATTTCCTCACCGCCGT CGCCATCTCCGTCGCTGCCCTCTTGGCGCTTGCCACTCTCGTGCGGAGACACCGCGCCCTTCTCGAAAACAGTCG GCTCTTGCCCGACGGCATGGAAGCCTCCGTCAACAGCATCCAAGACGCCGAGCGAGCCTCCCGCAAGGTGGCGAC GCTATGGCACCTCTTCGTCAAGCTCCGCTGGCTCGCGCTTGGCGTCGCACTCACATTTGCCGCCACCATGTTCTT CCCCGTCTTTACTACCAAGACGCTCTCCGTCCATCCAGACGCCGCTCCGCTCTTCCGCCCTGCCGCCTTCATCCC GCTCGCCTTCCTGTGCTGGAACCTTGGCGACCTGGTCGGCAGGGTCCTCGCCGTCCTACCTTTATCGCTGCGGCA CCGACCCTTTTACCTCTTCGTTCTCTCCGTCATCCGCATCGGCCAGTTGCCGCTCTACCTGCTCTGCAATATTGG CGGCCGGGGCGCCTCGGTCCCCAGCGACTTCTTCTATCTCGTCATCGTCCAGCTCTTGTTCGGCCTGACCAATGG CTGGCTGGGCTCGAGCTTCATGATGGCTGCCGGTGAATGGGTCGAGCCGGGGGAGCGTGAGGCCGCCGGTGCCTT TATGGGCCTCTGTCTAGTCGTCGGCTTGGCCTTGGGCAGCTTCCTGAGCTTTACCATCGCCGACATCTAA |