Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06540
Gene name
Locationscaffold_08:388242..388692
Strand-
Gene length (bp)450
Transcript length (bp)333
Coding sequence length (bp)333
Protein length (aa) 111

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03660 PHF5 PHF5-like protein 2.4E-52 1 103

GO

GO Term Description Terminal node
GO:0000398 mRNA splicing, via spliceosome Yes
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile No
GO:0006397 mRNA processing No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0009987 cellular process No
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0000375 RNA splicing, via transesterification reactions No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0008380 RNA splicing No
GO:0090304 nucleic acid metabolic process No
GO:0016071 mRNA metabolic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6437 0.6511 0.0329 0.0742 0.2639 0.0306 0.1686 0.189 0.1325 0.0097

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup1876
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4294
Ophiocordyceps australis map64 (Brazil) OphauB2|5193
Ophiocordyceps camponoti-floridani Ophcf2|06540 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|5929
Ophiocordyceps kimflemingae Ophio5|3211
Ophiocordyceps subramaniannii Hirsu2|1918

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06540
MSRHHPDLVMCRKQPGIAIGRLCDKCDGKCPVCDSYVRPTTLVRICDECSFGNYQNKCVVCGGEGISDAFYCFEC
TRLEKDRDGCPKIINLGSSRTDLFYQKKTNRSTNY*
Coding >Ophcf2|06540
ATGTCTCGTCACCACCCCGATCTTGTCATGTGCCGCAAGCAGCCAGGCATCGCCATCGGCCGTCTCTGCGACAAG
TGCGACGGCAAATGCCCCGTCTGCGACTCTTACGTTCGCCCAACGACTCTCGTCCGCATCTGCGATGAGTGCAGC
TTCGGCAACTACCAGAACAAGTGCGTCGTCTGCGGTGGCGAGGGCATCTCCGACGCCTTCTACTGCTTCGAATGC
ACCCGTCTCGAAAAGGACCGCGACGGCTGCCCCAAGATCATAAATCTCGGAAGCTCCCGGACTGATCTATTCTAC
CAAAAGAAGACAAATCGGTCGACAAATTACTAG
Transcript >Ophcf2|06540
ATGTCTCGTCACCACCCCGATCTTGTCATGTGCCGCAAGCAGCCAGGCATCGCCATCGGCCGTCTCTGCGACAAG
TGCGACGGCAAATGCCCCGTCTGCGACTCTTACGTTCGCCCAACGACTCTCGTCCGCATCTGCGATGAGTGCAGC
TTCGGCAACTACCAGAACAAGTGCGTCGTCTGCGGTGGCGAGGGCATCTCCGACGCCTTCTACTGCTTCGAATGC
ACCCGTCTCGAAAAGGACCGCGACGGCTGCCCCAAGATCATAAATCTCGGAAGCTCCCGGACTGATCTATTCTAC
CAAAAGAAGACAAATCGGTCGACAAATTACTAG
Gene >Ophcf2|06540
ATGTCTCGTCACCACCCGTAAGCCACCTCCCCAAACCGCTCTTCAAAACCCTCTCCTAACAGAAACCTCAGCGAT
CTTGTCATGTGCCGCAAGCAGCCAGGCATCGCCATCGGCCGTCTCTGCGACAAGTGCGACGGCAAATGCCCCGTC
TGCGACTCTTACGTTCGCCCAACGACTCTCGTCCGCATCTGCGATGAGTGCAGCTTCGGCAACTACCAGAACAAG
TGCGTCGTCTGCGGTGGCGAGGGCATCTCCGACGCCTTCTACTGCTTCGAATGCACCCGTCTCGAAAAGGACCGC
GACGGCTGCCCCAAGATCATAAATCTCGGAAGCTCCCGGACTGATGTACGCGCTGAAACTCGGTCTTCCCCAACC
GAGAATTACGTGCTGACCCGTCTTCTCGCTCAGCTATTCTACCAAAAGAAGACAAATCGGTCGACAAATTACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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