© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06537 |
| Gene name | |
| Location | scaffold_08:382619..384007 |
| Strand | - |
| Gene length (bp) | 1388 |
| Transcript length (bp) | 1329 |
| Coding sequence length (bp) | 1329 |
| Protein length (aa) | 443 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07946 | CCDC47 | PAT complex subunit CCDC47 | 5.0E-109 | 84 | 433 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032469 | endoplasmic reticulum calcium ion homeostasis | Yes |
| GO:0005509 | calcium ion binding | Yes |
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0043229 | intracellular organelle | No |
| GO:0043226 | organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0072507 | divalent inorganic cation homeostasis | No |
| GO:0006874 | cellular calcium ion homeostasis | No |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0009987 | cellular process | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0072503 | cellular divalent inorganic cation homeostasis | No |
| GO:0046872 | metal ion binding | No |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0065007 | biological regulation | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0055074 | calcium ion homeostasis | No |
| GO:0055080 | cation homeostasis | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0050801 | ion homeostasis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 108 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 145.28 | 80.63 | 209.93 |
| Alive | In ants, during behavior modification | 100.49 | 56.84 | 144.13 |
| Dead | In ants, recently dead | 137.06 | 76.14 | 197.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.046411 | yes |
| Alive | Dead | 0.060112 | no |
| Dead | Fungus | 0.805139 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06537 MAQRLLQSLFGGNQPPAPAAKPLDADFADFAADSAGAPEAAPEAVPEPGPGKATLTAAAAAASPTGQQPWTKWYR VQDRHSLSEFKAEGVILAIVALMLVLHVLGARVNRAKARAWMRANAAVLRSEFALVGFGDVPTMDRDDVIADGLL RENSLFEFATYATGRQNAAFMDVKLTLAKRFNPVLSSIEAVAAVFSEMFAPPADVLEAVLYPFDGKEELTVPKPP GEDSRKDSRSTYEGFVWAIVHKDRMQKLREERYDVTLASTRDNAKLPAWLTVMSESPEITDALLTKELTAAVTAA GDAFEYVIVSDQPVDKPKTMEETTPRKRLFLRYRLPSSDDYKALTALLTCFARLPDVLVQSARFRPEVMRKVRAT REAMMAQLKKAHDEERNEERLAEKEKSRKAKRDAELKGLDAKAQKKYLEKEREKEMRRNQKKMTMRG* |
| Coding | >Ophcf2|06537 ATGGCCCAGCGCCTTCTGCAGAGCCTCTTCGGTGGCAACCAGCCCCCTGCTCCGGCAGCCAAGCCGCTCGACGCC GACTTTGCCGACTTCGCCGCAGACTCGGCAGGCGCTCCGGAAGCAGCGCCGGAAGCTGTGCCGGAGCCCGGTCCC GGAAAGGCGACTCTCACCGCTGCCGCCGCCGCAGCCTCGCCGACGGGTCAGCAGCCATGGACGAAGTGGTATAGG GTACAGGACCGGCACTCGCTATCCGAGTTCAAGGCAGAGGGCGTCATCCTCGCCATCGTGGCTCTCATGCTGGTG CTGCACGTGTTGGGCGCACGCGTCAACCGGGCCAAGGCCAGGGCGTGGATGCGGGCCAACGCGGCGGTTTTACGA TCCGAATTCGCCCTCGTCGGCTTCGGAGATGTGCCGACCATGGACAGGGATGATGTTATCGCCGACGGGCTACTC CGTGAGAATTCGCTATTCGAGTTCGCGACGTATGCGACGGGGCGACAGAACGCGGCCTTTATGGACGTCAAGCTC ACGCTGGCCAAGCGTTTCAATCCAGTCCTCAGCTCCATCGAGGCCGTCGCCGCCGTCTTTTCCGAAATGTTCGCC CCTCCAGCCGACGTGTTGGAGGCGGTGCTGTATCCCTTTGACGGAAAGGAAGAGCTGACGGTTCCGAAGCCGCCT GGCGAAGACAGTCGCAAGGACTCGCGCAGCACGTACGAGGGCTTCGTCTGGGCCATTGTCCACAAAGACCGGATG CAAAAGCTGCGCGAGGAACGGTACGACGTGACGCTCGCTTCTACCAGGGACAACGCCAAGCTACCAGCCTGGCTG ACGGTCATGAGCGAGAGCCCCGAAATCACAGACGCGCTCCTAACCAAGGAGTTGACGGCGGCGGTGACGGCGGCC GGTGACGCGTTCGAATACGTCATCGTAAGCGATCAGCCCGTCGACAAGCCAAAGACGATGGAAGAGACGACGCCG CGCAAGCGTCTCTTCCTCCGCTACCGACTCCCCAGTTCAGACGACTACAAGGCGCTGACGGCGCTCCTCACATGC TTCGCCCGTCTCCCCGACGTGCTAGTCCAGTCAGCGCGATTCCGACCCGAGGTCATGCGCAAGGTGCGCGCCACG CGAGAAGCCATGATGGCGCAGCTCAAGAAGGCGCACGACGAGGAGCGCAACGAGGAGCGACTGGCAGAGAAGGAA AAGTCTCGCAAGGCCAAGCGCGATGCTGAGCTCAAGGGCTTGGACGCCAAGGCGCAGAAGAAATATCTGGAGAAG GAGAGGGAGAAGGAGATGCGGAGGAATCAGAAGAAGATGACGATGCGAGGCTGA |
| Transcript | >Ophcf2|06537 ATGGCCCAGCGCCTTCTGCAGAGCCTCTTCGGTGGCAACCAGCCCCCTGCTCCGGCAGCCAAGCCGCTCGACGCC GACTTTGCCGACTTCGCCGCAGACTCGGCAGGCGCTCCGGAAGCAGCGCCGGAAGCTGTGCCGGAGCCCGGTCCC GGAAAGGCGACTCTCACCGCTGCCGCCGCCGCAGCCTCGCCGACGGGTCAGCAGCCATGGACGAAGTGGTATAGG GTACAGGACCGGCACTCGCTATCCGAGTTCAAGGCAGAGGGCGTCATCCTCGCCATCGTGGCTCTCATGCTGGTG CTGCACGTGTTGGGCGCACGCGTCAACCGGGCCAAGGCCAGGGCGTGGATGCGGGCCAACGCGGCGGTTTTACGA TCCGAATTCGCCCTCGTCGGCTTCGGAGATGTGCCGACCATGGACAGGGATGATGTTATCGCCGACGGGCTACTC CGTGAGAATTCGCTATTCGAGTTCGCGACGTATGCGACGGGGCGACAGAACGCGGCCTTTATGGACGTCAAGCTC ACGCTGGCCAAGCGTTTCAATCCAGTCCTCAGCTCCATCGAGGCCGTCGCCGCCGTCTTTTCCGAAATGTTCGCC CCTCCAGCCGACGTGTTGGAGGCGGTGCTGTATCCCTTTGACGGAAAGGAAGAGCTGACGGTTCCGAAGCCGCCT GGCGAAGACAGTCGCAAGGACTCGCGCAGCACGTACGAGGGCTTCGTCTGGGCCATTGTCCACAAAGACCGGATG CAAAAGCTGCGCGAGGAACGGTACGACGTGACGCTCGCTTCTACCAGGGACAACGCCAAGCTACCAGCCTGGCTG ACGGTCATGAGCGAGAGCCCCGAAATCACAGACGCGCTCCTAACCAAGGAGTTGACGGCGGCGGTGACGGCGGCC GGTGACGCGTTCGAATACGTCATCGTAAGCGATCAGCCCGTCGACAAGCCAAAGACGATGGAAGAGACGACGCCG CGCAAGCGTCTCTTCCTCCGCTACCGACTCCCCAGTTCAGACGACTACAAGGCGCTGACGGCGCTCCTCACATGC TTCGCCCGTCTCCCCGACGTGCTAGTCCAGTCAGCGCGATTCCGACCCGAGGTCATGCGCAAGGTGCGCGCCACG CGAGAAGCCATGATGGCGCAGCTCAAGAAGGCGCACGACGAGGAGCGCAACGAGGAGCGACTGGCAGAGAAGGAA AAGTCTCGCAAGGCCAAGCGCGATGCTGAGCTCAAGGGCTTGGACGCCAAGGCGCAGAAGAAATATCTGGAGAAG GAGAGGGAGAAGGAGATGCGGAGGAATCAGAAGAAGATGACGATGCGAGGCTGA |
| Gene | >Ophcf2|06537 ATGGCCCAGCGCCTTCTGCAGAGCCTCTTCGGTGGCAACCAGCCCCCTGCTCCGGCAGCCAAGCCGCTCGACGCC GGTAAAGCTTTGCGAACCCCTCCCTCTCCCCCTCCCTCTCGTCTCACTGATCTCTGTTAGACTTTGCCGACTTCG CCGCAGACTCGGCAGGCGCTCCGGAAGCAGCGCCGGAAGCTGTGCCGGAGCCCGGTCCCGGAAAGGCGACTCTCA CCGCTGCCGCCGCCGCAGCCTCGCCGACGGGTCAGCAGCCATGGACGAAGTGGTATAGGGTACAGGACCGGCACT CGCTATCCGAGTTCAAGGCAGAGGGCGTCATCCTCGCCATCGTGGCTCTCATGCTGGTGCTGCACGTGTTGGGCG CACGCGTCAACCGGGCCAAGGCCAGGGCGTGGATGCGGGCCAACGCGGCGGTTTTACGATCCGAATTCGCCCTCG TCGGCTTCGGAGATGTGCCGACCATGGACAGGGATGATGTTATCGCCGACGGGCTACTCCGTGAGAATTCGCTAT TCGAGTTCGCGACGTATGCGACGGGGCGACAGAACGCGGCCTTTATGGACGTCAAGCTCACGCTGGCCAAGCGTT TCAATCCAGTCCTCAGCTCCATCGAGGCCGTCGCCGCCGTCTTTTCCGAAATGTTCGCCCCTCCAGCCGACGTGT TGGAGGCGGTGCTGTATCCCTTTGACGGAAAGGAAGAGCTGACGGTTCCGAAGCCGCCTGGCGAAGACAGTCGCA AGGACTCGCGCAGCACGTACGAGGGCTTCGTCTGGGCCATTGTCCACAAAGACCGGATGCAAAAGCTGCGCGAGG AACGGTACGACGTGACGCTCGCTTCTACCAGGGACAACGCCAAGCTACCAGCCTGGCTGACGGTCATGAGCGAGA GCCCCGAAATCACAGACGCGCTCCTAACCAAGGAGTTGACGGCGGCGGTGACGGCGGCCGGTGACGCGTTCGAAT ACGTCATCGTAAGCGATCAGCCCGTCGACAAGCCAAAGACGATGGAAGAGACGACGCCGCGCAAGCGTCTCTTCC TCCGCTACCGACTCCCCAGTTCAGACGACTACAAGGCGCTGACGGCGCTCCTCACATGCTTCGCCCGTCTCCCCG ACGTGCTAGTCCAGTCAGCGCGATTCCGACCCGAGGTCATGCGCAAGGTGCGCGCCACGCGAGAAGCCATGATGG CGCAGCTCAAGAAGGCGCACGACGAGGAGCGCAACGAGGAGCGACTGGCAGAGAAGGAAAAGTCTCGCAAGGCCA AGCGCGATGCTGAGCTCAAGGGCTTGGACGCCAAGGCGCAGAAGAAATATCTGGAGAAGGAGAGGGAGAAGGAGA TGCGGAGGAATCAGAAGAAGATGACGATGCGAGGCTGA |