© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06529 |
| Gene name | |
| Location | scaffold_08:355866..357365 |
| Strand | - |
| Gene length (bp) | 1499 |
| Transcript length (bp) | 1248 |
| Coding sequence length (bp) | 1248 |
| Protein length (aa) | 416 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03435 | Sacchrp_dh_NADP | Saccharopine dehydrogenase NADP binding domain | 2.6E-16 | 5 | 135 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 288 | 307 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 282.75 | 143.36 | 422.13 |
| Alive | In ants, during behavior modification | 173.05 | 87.25 | 258.84 |
| Dead | In ants, recently dead | 133.56 | 75.14 | 191.99 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.020835 | yes |
| Alive | Dead | 0.137310 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06529 MYDLVILGATGYTGLLTAEHVATNLPSSLKWALAGRSKAKLQTVADECKQLSPTMSTPELELVNVDDADQMDALV RKTSLVITTVGPYFRFGEAVVRACAQAGTHYVDCTGETPWVASMIKKYEGAARQSGAILVPCNGVESAATDLITW SLVSFVKEKLGVGVEDVVLSIHKSSIVPSGGTVATAMGVFDHYSLSDLMSNRKPYALSPVPHPERQRPVSSFLNT LLGIRHVPDLGLQATSLQAAVDAPVIERTWGLLQQTPSRKAQFYGPKFNWIAYQKPRNWLSGIAMHWVLAVGTVI IALVAPVRTLIKKLAHEPGQGLSKDGMAREELDYRGTAVPDDPSGAVKKRAYCRAQYRGSSYQATALFLAHAAQT MLEDKMELPGGFYTPACLGKGYVDRVNRAGFKIDVKMLDD* |
| Coding | >Ophcf2|06529 ATGTACGATCTCGTCATCTTGGGAGCTACCGGCTATACTGGCCTCTTGACGGCCGAGCACGTCGCTACCAATCTC CCTTCCAGTCTCAAATGGGCTCTCGCAGGCCGCTCCAAGGCCAAGCTGCAGACCGTGGCGGACGAATGCAAGCAG TTGAGCCCTACCATGTCGACGCCTGAGCTGGAGCTGGTTAATGTGGATGACGCGGATCAGATGGACGCCCTCGTT CGCAAGACGTCGCTCGTCATCACCACGGTTGGCCCTTACTTTCGCTTCGGCGAGGCTGTGGTTCGGGCTTGTGCT CAGGCTGGCACTCACTATGTTGACTGCACCGGCGAGACCCCCTGGGTGGCGAGCATGATTAAGAAATACGAGGGA GCGGCGAGGCAGAGCGGTGCCATCTTGGTTCCCTGCAATGGCGTCGAGTCGGCTGCCACCGACCTCATCACCTGG AGCCTCGTGAGCTTCGTCAAGGAGAAGCTAGGCGTTGGAGTAGAGGACGTCGTTCTATCCATCCACAAGTCCAGC ATCGTCCCGTCCGGCGGCACCGTCGCCACGGCAATGGGCGTCTTCGACCACTACTCCCTCTCGGATCTCATGTCC AACAGAAAGCCCTACGCCCTCTCCCCCGTCCCGCACCCTGAAAGGCAGCGCCCCGTCTCGTCGTTCCTCAACACC CTCCTCGGCATCCGACACGTACCCGATCTCGGCCTCCAGGCGACGTCGCTACAGGCGGCCGTCGACGCGCCGGTG ATAGAGCGCACATGGGGCCTCCTTCAGCAGACCCCCTCGCGCAAGGCCCAGTTCTACGGCCCCAAATTCAACTGG ATCGCCTACCAGAAGCCGCGGAACTGGCTCTCCGGCATAGCCATGCACTGGGTCCTCGCCGTCGGCACCGTCATC ATCGCCCTCGTCGCCCCCGTCAGGACCCTCATCAAGAAGCTCGCCCACGAGCCTGGCCAGGGCCTCAGCAAGGAC GGCATGGCCAGAGAGGAGCTCGACTACCGCGGAACGGCCGTGCCGGATGATCCGTCGGGAGCCGTCAAGAAGCGA GCCTACTGTCGGGCTCAGTACCGCGGCAGCTCGTATCAAGCCACGGCTCTCTTCTTGGCGCACGCGGCTCAGACG ATGCTCGAGGATAAGATGGAGCTTCCAGGAGGCTTCTACACGCCGGCCTGCCTCGGCAAGGGCTACGTCGATCGC GTGAACCGCGCTGGCTTCAAGATCGATGTCAAGATGTTGGATGATTAG |
| Transcript | >Ophcf2|06529 ATGTACGATCTCGTCATCTTGGGAGCTACCGGCTATACTGGCCTCTTGACGGCCGAGCACGTCGCTACCAATCTC CCTTCCAGTCTCAAATGGGCTCTCGCAGGCCGCTCCAAGGCCAAGCTGCAGACCGTGGCGGACGAATGCAAGCAG TTGAGCCCTACCATGTCGACGCCTGAGCTGGAGCTGGTTAATGTGGATGACGCGGATCAGATGGACGCCCTCGTT CGCAAGACGTCGCTCGTCATCACCACGGTTGGCCCTTACTTTCGCTTCGGCGAGGCTGTGGTTCGGGCTTGTGCT CAGGCTGGCACTCACTATGTTGACTGCACCGGCGAGACCCCCTGGGTGGCGAGCATGATTAAGAAATACGAGGGA GCGGCGAGGCAGAGCGGTGCCATCTTGGTTCCCTGCAATGGCGTCGAGTCGGCTGCCACCGACCTCATCACCTGG AGCCTCGTGAGCTTCGTCAAGGAGAAGCTAGGCGTTGGAGTAGAGGACGTCGTTCTATCCATCCACAAGTCCAGC ATCGTCCCGTCCGGCGGCACCGTCGCCACGGCAATGGGCGTCTTCGACCACTACTCCCTCTCGGATCTCATGTCC AACAGAAAGCCCTACGCCCTCTCCCCCGTCCCGCACCCTGAAAGGCAGCGCCCCGTCTCGTCGTTCCTCAACACC CTCCTCGGCATCCGACACGTACCCGATCTCGGCCTCCAGGCGACGTCGCTACAGGCGGCCGTCGACGCGCCGGTG ATAGAGCGCACATGGGGCCTCCTTCAGCAGACCCCCTCGCGCAAGGCCCAGTTCTACGGCCCCAAATTCAACTGG ATCGCCTACCAGAAGCCGCGGAACTGGCTCTCCGGCATAGCCATGCACTGGGTCCTCGCCGTCGGCACCGTCATC ATCGCCCTCGTCGCCCCCGTCAGGACCCTCATCAAGAAGCTCGCCCACGAGCCTGGCCAGGGCCTCAGCAAGGAC GGCATGGCCAGAGAGGAGCTCGACTACCGCGGAACGGCCGTGCCGGATGATCCGTCGGGAGCCGTCAAGAAGCGA GCCTACTGTCGGGCTCAGTACCGCGGCAGCTCGTATCAAGCCACGGCTCTCTTCTTGGCGCACGCGGCTCAGACG ATGCTCGAGGATAAGATGGAGCTTCCAGGAGGCTTCTACACGCCGGCCTGCCTCGGCAAGGGCTACGTCGATCGC GTGAACCGCGCTGGCTTCAAGATCGATGTCAAGATGTTGGATGATTAG |
| Gene | >Ophcf2|06529 ATGTACGATCTCGTCATCTTGGGAGCTACCGGTGAGGAAACCGCGCGGTCGACACGAGTCTTCTCTTTACCGCTG GTGCTGATTCCATGACGCAGGCTATACTGGCCTCTTGACGGCCGAGCACGTCGCTACCAATCTCCCTTCCAGTCT CAAATGGGCTCTCGCAGGCCGCTCCAAGGCCAAGCTGCAGACCGTGGCGGACGAATGCAAGCAGTTGAGCCCTAC CATGTCGACGCCTGGTGTGTTCTCCCCTTCGCAACCTTGCTTATTTCGATCCGAGCGCTGAGCGTGTGAATGGTC AAAGAGCTGGAGCTGGTTAATGTGGATGACGCGGATCAGATGGACGCCCTCGTTCGCAAGACGTCGCTCGTCATC ACCACGGTTGGCCCTTACTTTCGCTTCGGCGAGGCTGTGGTTCGGGCTTGTGCTCAGGCTGGCACTCACTATGTT GACTGCACCGGCGAGACCCCCTGGGTGGCGAGCATGATTAAGAAATACGAGGGAGCGGCGAGGCAGAGCGGTGCC ATCTTGGTTCCCTGCAATGGCGTCGAGTCGGCTGCCACCGACCTCATCACCTGGAGCCTCGTGAGCTTCGTCAAG GAGAAGCTAGGCGTTGGAGTAGAGGACGTCGTTCTATCCATCCACAAGTCCAGGTCAGTCATCGTCTCCCCCATC CAGTCGACGCCAATATCACAACATCTCCTCTAACACCAGCATGGCAGCATCGTCCCGTCCGGCGGCACCGTCGCC ACGGCAATGGGCGTCTTCGACCACTACTCCCTCTCGGATCTCATGTCCAACAGAAAGCCCTACGCCCTCTCCCCC GTCCCGCACCCTGAAAGGCAGCGCCCCGTCTCGTCGTTCCTCAACACCCTCCTCGGCATCCGACACGTACCCGAT CTCGGCCTCCAGGCGACGTCGCTACAGGCGGCCGTCGACGCGCCGGTGATAGAGCGCACATGGGGCCTCCTTCAG CAGACCCCCTCGCGCAAGGCCCAGTTCTACGGCCCCAAATTCAACTGGATCGCCTACCAGAAGCCGCGGAACTGG CTCTCCGGCATAGCCATGCACTGGGTCCTCGCCGTCGGCACCGTCATCATCGCCCTCGTCGCCCCCGTCAGGACC CTCATCAAGAAGCTCGCCCACGAGCCTGGCCAGGGCCTCAGCAAGGACGGCATGGCCAGAGAGGAGCTCGACTAC CGCGGAACGGCCGTGCCGGATGATCCGTCGGGAGCCGTCAAGAAGCGAGCCTACTGTCGGGCTCAGTACCGCGGC AGCTCGTATCAAGGTGAGTCTCGCGACCCTATTATATCCCCTACGGGAAAGCTAACGATGGGAAAGCCACGGCTC TCTTCTTGGCGCACGCGGCTCAGACGATGCTCGAGGATAAGATGGAGCTTCCAGGAGGCTTCTACACGCCGGCCT GCCTCGGCAAGGGCTACGTCGATCGCGTGAACCGCGCTGGCTTCAAGATCGATGTCAAGATGTTGGATGATTAG |