© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06520 |
| Gene name | |
| Location | scaffold_08:332220..333534 |
| Strand | - |
| Gene length (bp) | 1314 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1314 |
| Protein length (aa) | 438 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 74 | 96 | 22 |
| 4 | 116 | 138 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 61.49 | 34.78 | 88.21 |
| Alive | In ants, during behavior modification | 52.93 | 29.37 | 76.49 |
| Dead | In ants, recently dead | 48.75 | 27.01 | 70.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.489003 | no |
| Alive | Dead | 0.679695 | no |
| Dead | Fungus | 0.250395 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06520 MSRAAWPVLGSTLALLATSTVLCLQINIVVNTTASPLRPATAVAGSLQFFVLAILWWLAVSRILHTGRATHPNLT FGLGLFACALAAAVSAASLVYLRNAGAESEAVAQLQTRLLVATSVAVTFATGLQLASIISHFIASREPASLKREA SEMPAEQPTRRLRRIKSIPYSQTKSSGDETAQEKMASPPLPPSPVVTTTPKGFVFTSPFARAVRSSSFKQKSTAP KKQRRRASEDSDIRRTSLQGSSFDSWDTSSVDIHNRQVVLEMSTPSSAKQQSLETIPASPSHSRRSSVGSPTDPG FPQSLRTSRSLSHGTLKHREEARPTPASSIHELHIHPLFRSDSQDPPPLASPGTSVVASPIAGQVITRRESSKSL GGMLSGSTSGLHSPLAHQTCFESSEPTPDGSHASEEDSEGERPTTAPVPPWLLTQERDQSDE* |
| Coding | >Ophcf2|06520 ATGTCTCGCGCCGCCTGGCCTGTCCTCGGCAGCACCTTGGCCCTGCTCGCAACGTCGACGGTCCTGTGTCTGCAG ATCAACATCGTCGTCAACACCACGGCCTCTCCCCTGAGGCCCGCAACCGCCGTCGCCGGCTCTCTGCAGTTTTTC GTCCTAGCCATCCTCTGGTGGCTCGCCGTGTCTCGCATCTTGCACACCGGCAGAGCGACACATCCCAACCTCACC TTTGGCCTGGGCCTTTTCGCCTGCGCACTCGCCGCCGCCGTCTCCGCCGCGTCTTTGGTATACCTGCGCAACGCC GGTGCCGAGTCGGAGGCCGTTGCCCAACTCCAGACCCGACTTCTGGTGGCCACCTCGGTCGCCGTGACGTTTGCC ACTGGTCTCCAGCTCGCCTCCATCATCTCTCACTTCATCGCGTCTCGGGAGCCTGCCTCTCTTAAGCGAGAAGCT TCCGAGATGCCGGCCGAACAACCCACAAGACGGCTGCGTCGCATCAAGTCGATCCCATACAGCCAGACCAAGAGT AGCGGTGACGAGACGGCGCAGGAAAAAATGGCATCGCCTCCCCTGCCCCCGTCACCCGTCGTCACCACGACGCCC AAGGGCTTCGTCTTCACTTCTCCCTTTGCCCGAGCCGTACGGTCGAGCTCATTCAAGCAAAAGTCGACAGCGCCC AAGAAGCAGCGACGGCGGGCTTCCGAAGATTCAGACATCCGGAGGACAAGCCTCCAAGGGTCTTCGTTCGATTCG TGGGATACGTCCTCGGTCGATATCCACAACCGACAGGTGGTGCTGGAGATGTCGACTCCTTCGTCAGCAAAGCAG CAGAGCCTCGAGACTATTCCCGCCAGTCCGTCGCACAGCCGGAGGTCGAGCGTGGGGAGCCCAACTGACCCCGGC TTTCCTCAGTCGTTGCGCACCAGCCGAAGCCTAAGCCATGGCACGCTGAAGCATCGAGAGGAAGCTCGACCTACG CCCGCGAGCTCCATTCACGAGCTTCACATCCATCCGCTGTTTCGATCCGACTCGCAGGACCCACCACCGCTGGCA TCGCCCGGGACCAGCGTCGTGGCGTCGCCCATCGCAGGGCAGGTCATCACGCGTCGCGAAAGCAGCAAATCTCTC GGCGGGATGCTCAGTGGCAGTACATCGGGATTGCACAGCCCGCTAGCCCATCAAACTTGCTTCGAAAGCTCGGAG CCGACGCCGGACGGCTCTCACGCGTCGGAAGAGGATAGCGAGGGGGAACGACCGACAACGGCTCCTGTGCCTCCG TGGCTGCTGACTCAGGAGCGCGACCAGAGCGATGAGTGA |
| Transcript | >Ophcf2|06520 ATGTCTCGCGCCGCCTGGCCTGTCCTCGGCAGCACCTTGGCCCTGCTCGCAACGTCGACGGTCCTGTGTCTGCAG ATCAACATCGTCGTCAACACCACGGCCTCTCCCCTGAGGCCCGCAACCGCCGTCGCCGGCTCTCTGCAGTTTTTC GTCCTAGCCATCCTCTGGTGGCTCGCCGTGTCTCGCATCTTGCACACCGGCAGAGCGACACATCCCAACCTCACC TTTGGCCTGGGCCTTTTCGCCTGCGCACTCGCCGCCGCCGTCTCCGCCGCGTCTTTGGTATACCTGCGCAACGCC GGTGCCGAGTCGGAGGCCGTTGCCCAACTCCAGACCCGACTTCTGGTGGCCACCTCGGTCGCCGTGACGTTTGCC ACTGGTCTCCAGCTCGCCTCCATCATCTCTCACTTCATCGCGTCTCGGGAGCCTGCCTCTCTTAAGCGAGAAGCT TCCGAGATGCCGGCCGAACAACCCACAAGACGGCTGCGTCGCATCAAGTCGATCCCATACAGCCAGACCAAGAGT AGCGGTGACGAGACGGCGCAGGAAAAAATGGCATCGCCTCCCCTGCCCCCGTCACCCGTCGTCACCACGACGCCC AAGGGCTTCGTCTTCACTTCTCCCTTTGCCCGAGCCGTACGGTCGAGCTCATTCAAGCAAAAGTCGACAGCGCCC AAGAAGCAGCGACGGCGGGCTTCCGAAGATTCAGACATCCGGAGGACAAGCCTCCAAGGGTCTTCGTTCGATTCG TGGGATACGTCCTCGGTCGATATCCACAACCGACAGGTGGTGCTGGAGATGTCGACTCCTTCGTCAGCAAAGCAG CAGAGCCTCGAGACTATTCCCGCCAGTCCGTCGCACAGCCGGAGGTCGAGCGTGGGGAGCCCAACTGACCCCGGC TTTCCTCAGTCGTTGCGCACCAGCCGAAGCCTAAGCCATGGCACGCTGAAGCATCGAGAGGAAGCTCGACCTACG CCCGCGAGCTCCATTCACGAGCTTCACATCCATCCGCTGTTTCGATCCGACTCGCAGGACCCACCACCGCTGGCA TCGCCCGGGACCAGCGTCGTGGCGTCGCCCATCGCAGGGCAGGTCATCACGCGTCGCGAAAGCAGCAAATCTCTC GGCGGGATGCTCAGTGGCAGTACATCGGGATTGCACAGCCCGCTAGCCCATCAAACTTGCTTCGAAAGCTCGGAG CCGACGCCGGACGGCTCTCACGCGTCGGAAGAGGATAGCGAGGGGGAACGACCGACAACGGCTCCTGTGCCTCCG TGGCTGCTGACTCAGGAGCGCGACCAGAGCGATGAGTGA |
| Gene | >Ophcf2|06520 ATGTCTCGCGCCGCCTGGCCTGTCCTCGGCAGCACCTTGGCCCTGCTCGCAACGTCGACGGTCCTGTGTCTGCAG ATCAACATCGTCGTCAACACCACGGCCTCTCCCCTGAGGCCCGCAACCGCCGTCGCCGGCTCTCTGCAGTTTTTC GTCCTAGCCATCCTCTGGTGGCTCGCCGTGTCTCGCATCTTGCACACCGGCAGAGCGACACATCCCAACCTCACC TTTGGCCTGGGCCTTTTCGCCTGCGCACTCGCCGCCGCCGTCTCCGCCGCGTCTTTGGTATACCTGCGCAACGCC GGTGCCGAGTCGGAGGCCGTTGCCCAACTCCAGACCCGACTTCTGGTGGCCACCTCGGTCGCCGTGACGTTTGCC ACTGGTCTCCAGCTCGCCTCCATCATCTCTCACTTCATCGCGTCTCGGGAGCCTGCCTCTCTTAAGCGAGAAGCT TCCGAGATGCCGGCCGAACAACCCACAAGACGGCTGCGTCGCATCAAGTCGATCCCATACAGCCAGACCAAGAGT AGCGGTGACGAGACGGCGCAGGAAAAAATGGCATCGCCTCCCCTGCCCCCGTCACCCGTCGTCACCACGACGCCC AAGGGCTTCGTCTTCACTTCTCCCTTTGCCCGAGCCGTACGGTCGAGCTCATTCAAGCAAAAGTCGACAGCGCCC AAGAAGCAGCGACGGCGGGCTTCCGAAGATTCAGACATCCGGAGGACAAGCCTCCAAGGGTCTTCGTTCGATTCG TGGGATACGTCCTCGGTCGATATCCACAACCGACAGGTGGTGCTGGAGATGTCGACTCCTTCGTCAGCAAAGCAG CAGAGCCTCGAGACTATTCCCGCCAGTCCGTCGCACAGCCGGAGGTCGAGCGTGGGGAGCCCAACTGACCCCGGC TTTCCTCAGTCGTTGCGCACCAGCCGAAGCCTAAGCCATGGCACGCTGAAGCATCGAGAGGAAGCTCGACCTACG CCCGCGAGCTCCATTCACGAGCTTCACATCCATCCGCTGTTTCGATCCGACTCGCAGGACCCACCACCGCTGGCA TCGCCCGGGACCAGCGTCGTGGCGTCGCCCATCGCAGGGCAGGTCATCACGCGTCGCGAAAGCAGCAAATCTCTC GGCGGGATGCTCAGTGGCAGTACATCGGGATTGCACAGCCCGCTAGCCCATCAAACTTGCTTCGAAAGCTCGGAG CCGACGCCGGACGGCTCTCACGCGTCGGAAGAGGATAGCGAGGGGGAACGACCGACAACGGCTCCTGTGCCTCCG TGGCTGCTGACTCAGGAGCGCGACCAGAGCGATGAGTGA |