© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06506 |
| Gene name | |
| Location | scaffold_08:290354..292761 |
| Strand | - |
| Gene length (bp) | 2407 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01182 | Glucosamine_iso | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase | 3.4E-70 | 13 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 293 | 315 | 22 |
| 2 | 356 | 378 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 70.14 | 40.01 | 100.26 |
| Alive | In ants, during behavior modification | 43.88 | 23.60 | 64.16 |
| Dead | In ants, recently dead | 35.22 | 18.61 | 51.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.012565 | yes |
| Alive | Dead | 0.232897 | no |
| Dead | Fungus | 0.000657 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06506 MAKSQPNLYAFPDVDALAPALRAYVLQCQSAAFDRHGTFKVAVSGGSLPKTLAAALLDCPSIDWSRWEIFFADER AVPLDDPESNYALVKKDMLDRLPKDTAQPVVHPINVDLLDEGVQAVADAYERTLVGSFASRDSVRLPIFDLVLLG CGPDGHTCSLFPGHALLRETDAWVAPIQDSPKPPPRRITLTLPVVTHAIRAAFVATGASKRDVMKKIFDSPDEQL PCNLVNAAAGDRCSCISLVQGHLAAFQLGARARNRGEALAELLARAGVPLRFSGQGVAVEEVQFVEKAGLVVIFV VVVVVVVAFFFSSCGADRPAVTVLLARACIAPRLTPTPDPGTASVRLDVDAERPSVIALRPFVVVVVVGGGGGGI MAADPGLAAPPRGVGVAVVDRALPPGFTGSRLGEIDSPGLGPVRWDRLR* |
| Coding | >Ophcf2|06506 ATGGCCAAGTCACAGCCCAACCTCTACGCCTTCCCCGACGTCGACGCCCTCGCTCCCGCCCTCCGCGCCTACGTC CTTCAATGTCAATCCGCCGCCTTCGACCGCCACGGCACCTTCAAGGTAGCCGTCTCAGGCGGATCGCTGCCCAAG ACTCTGGCAGCCGCCCTGCTCGACTGCCCGTCCATCGACTGGTCACGGTGGGAAATCTTCTTCGCCGATGAGCGC GCCGTTCCCCTCGACGACCCCGAATCCAACTACGCGCTCGTCAAGAAGGACATGTTGGATCGTCTGCCCAAGGAT ACGGCCCAGCCGGTCGTGCACCCCATCAACGTCGACCTCCTCGACGAAGGCGTCCAGGCCGTGGCGGACGCGTAC GAGAGGACGTTAGTGGGTAGCTTCGCAAGCCGCGACTCCGTCCGCCTCCCCATCTTCGACCTCGTCCTCCTCGGA TGCGGACCCGACGGACACACCTGCTCCCTCTTCCCCGGCCACGCCCTTCTCCGCGAGACAGACGCCTGGGTGGCG CCCATCCAAGACTCGCCCAAGCCTCCACCCCGACGGATCACGCTGACGCTTCCCGTCGTGACGCACGCCATCCGT GCCGCCTTTGTCGCTACCGGTGCCTCTAAGCGCGACGTCATGAAGAAGATCTTCGATTCGCCCGACGAGCAACTC CCCTGCAATCTCGTCAATGCCGCGGCTGGTGATCGCTGCAGCTGCATCAGCCTCGTCCAAGGCCATCTCGCGGCT TTCCAGCTCGGCGCCCGCGCGCGAAACAGAGGCGAAGCGCTGGCCGAGCTTCTCGCGCGCGCTGGCGTGCCACTG CGCTTCAGCGGTCAGGGCGTCGCGGTGGAGGAGGTGCAGTTCGTAGAGAAGGCCGGTCTCGTCGTCATCTTCGTC GTCGTCGTCGTCGTCGTCGTAGCCTTCTTCTTCTCTTCTTGCGGAGCAGATAGACCAGCCGTGACGGTACTCCTG GCACGCGCATGCATCGCACCACGTCTAACCCCGACGCCCGACCCGGGAACAGCATCCGTCCGACTCGACGTCGAC GCCGAACGCCCCAGCGTCATCGCGCTCCGACCCTTCGTCGTCGTCGTCGTCGTCGGTGGAGGAGGAGGCGGCATC ATGGCAGCGGATCCCGGTCTCGCCGCACCACCGCGCGGAGTCGGAGTCGCCGTCGTGGACCGCGCGCTCCCTCCC GGCTTCACCGGCAGCCGGCTGGGCGAGATCGACTCTCCCGGCCTCGGACCCGTGCGCTGGGATCGACTGCGCTGA |
| Transcript | >Ophcf2|06506 ATGGCCAAGTCACAGCCCAACCTCTACGCCTTCCCCGACGTCGACGCCCTCGCTCCCGCCCTCCGCGCCTACGTC CTTCAATGTCAATCCGCCGCCTTCGACCGCCACGGCACCTTCAAGGTAGCCGTCTCAGGCGGATCGCTGCCCAAG ACTCTGGCAGCCGCCCTGCTCGACTGCCCGTCCATCGACTGGTCACGGTGGGAAATCTTCTTCGCCGATGAGCGC GCCGTTCCCCTCGACGACCCCGAATCCAACTACGCGCTCGTCAAGAAGGACATGTTGGATCGTCTGCCCAAGGAT ACGGCCCAGCCGGTCGTGCACCCCATCAACGTCGACCTCCTCGACGAAGGCGTCCAGGCCGTGGCGGACGCGTAC GAGAGGACGTTAGTGGGTAGCTTCGCAAGCCGCGACTCCGTCCGCCTCCCCATCTTCGACCTCGTCCTCCTCGGA TGCGGACCCGACGGACACACCTGCTCCCTCTTCCCCGGCCACGCCCTTCTCCGCGAGACAGACGCCTGGGTGGCG CCCATCCAAGACTCGCCCAAGCCTCCACCCCGACGGATCACGCTGACGCTTCCCGTCGTGACGCACGCCATCCGT GCCGCCTTTGTCGCTACCGGTGCCTCTAAGCGCGACGTCATGAAGAAGATCTTCGATTCGCCCGACGAGCAACTC CCCTGCAATCTCGTCAATGCCGCGGCTGGTGATCGCTGCAGCTGCATCAGCCTCGTCCAAGGCCATCTCGCGGCT TTCCAGCTCGGCGCCCGCGCGCGAAACAGAGGCGAAGCGCTGGCCGAGCTTCTCGCGCGCGCTGGCGTGCCACTG CGCTTCAGCGGTCAGGGCGTCGCGGTGGAGGAGGTGCAGTTCGTAGAGAAGGCCGGTCTCGTCGTCATCTTCGTC GTCGTCGTCGTCGTCGTCGTAGCCTTCTTCTTCTCTTCTTGCGGAGCAGATAGACCAGCCGTGACGGTACTCCTG GCACGCGCATGCATCGCACCACGTCTAACCCCGACGCCCGACCCGGGAACAGCATCCGTCCGACTCGACGTCGAC GCCGAACGCCCCAGCGTCATCGCGCTCCGACCCTTCGTCGTCGTCGTCGTCGTCGGTGGAGGAGGAGGCGGCATC ATGGCAGCGGATCCCGGTCTCGCCGCACCACCGCGCGGAGTCGGAGTCGCCGTCGTGGACCGCGCGCTCCCTCCC GGCTTCACCGGCAGCCGGCTGGGCGAGATCGACTCTCCCGGCCTCGGACCCGTGCGCTGGGATCGACTGCGCTGA |
| Gene | >Ophcf2|06506 ATGGCCAAGTCACAGCCCAACCTCTACGCCTTCCCCGACGTCGACGCCCTCGCTCCCGCCCTCCGCGCCTACGTC CTTCAATGTCAATCCGCCGCCTTCGACCGCCACGGCACCTTCAAGGTAGCCGTCTCAGGCGGATCGCTGCCCAAG ACTCTGGCAGCCGCCCTGCTCGACTGCCCGTCCATCGACTGGTCACGGTGGGAAATCTTCTTCGCCGATGAGCGC GCCGTTCCCCTCGACGACCCCGAATCCAACTACGCGCTCGTCAAGAAGGACATGTTGGATCGTCTGCCCAAGGAT ACGGCCCAGCCGGTCGTGCACCCCATCAACGTCGACCTCCTCGACGAAGGCGTCCAGGCCGTGGCGGACGCGTAC GAGAGGACGTTAGTGGGTAGCTTCGCAAGCCGCGACTCCGTCCGCCTCCCCATCTTCGACCTCGTCCTCCTCGGA TGCGGACCCGACGGACACACCTGCTCCCTCTTCCCCGGCCACGCCCTTCTCCGCGAGACAGACGCCTGGGTGGCG CCCATCCAAGACTCGCCCAAGCCTCCACCCCGACGGATCACGCTGACGCTTCCCGTCGTGACGCACGCCATCCGT GCCGCCTTTGTCGCTACCGGTGCCTCTAAGCGCGACGTCATGAAGAAGATCTTCGATTCGCCCGACGAGCAACTC CCCTGCAATCTCGTCAATGCCGCGGCTGGTGATCGCTGCAGCTGGTTCGTCGACGAGGCAGCCGTCGAGGGCGTT TCTTTCCCGAGAAAGGCTTTTCTGTAGGTCGTTTTTTTGGCTTATCATGCATGGCATTTGACCGTTCGCGAGCGG CGAGAATAGCAAGCCCTCCAGGCTTCATCCATCTAACCTGACGACGACGACGGGATGTGATGGAGGACCAAGAGT CTGATTTTCGCTTCCATAGACGGACTGCTTGCCGATGATGTGCGCTGTCCGTCATCGTCAACCTCGCCATACATA CATACCTATGCATATGTATGCTCTATGTATGCATAAGTGCCCGCCATCGCCGAGGCTATGCCGGGTTATAGACAG TCCATCTTCTCTCAACGAACCCCCCCCCCCCCCCGAAGACGGCCAGTGACCAGAATCTACGCATCTCTCCATCCA GCCCCTCCTTCATCCAGGGTATCGTCATGACCATGCCCAACCATTCTCTCAACCCACTCCACCTCCCTCGCCCGC ACCTCCCGCTCGATATCCTCCATGATGCTCAGCTCAGACATCATCACCCGCAACAGCTTCTTCGTACCAGCCAGC ACCCGTTCCGGACCCGACAAGGTCGTAGAGGTCTTCCCATCGTCACCTTGCTCCTCCTCCTTCTGCTCCTCCTCC TTCTGCTCCTCCTCCTTCTGCTCCTCCTCCTCCTGATCCTCATCACCACCCACCTGCCGTAGCCTCGCCCTCCAA CCCCCCAACCACCCCATCAAAACAACACACTCCTCCCTCCAACCCCCCTCCAGCCCATCAAGAAACCCCCATCCT CACCGCCCAAACCCTCCCTCCTCACCCTCTCAACCTCCCCGACCCCCTCAACCCACCTCTCAAACCCCCTAACCG CACACGCGTACCGGCCCCCCCCTCACACAAGGCCCAAAGCCCACCCAAGACCTCGCCCAAAACCTGCAGGCCGAG ATCGAGATCCCCCCCCCATCGCCTCAACGTCCGCAAAGCATCAGCCTCGTCCAAGGCCATCTCGCGGCTTTCCAG CTCGGCGCCCGCGCGCGAAACAGAGGCGAAGCGCTGGCCGAGCTTCTCGCGCGCGCTGGCGTGCCACTGCGCTTC AGCGGTCAGGGCGTCGCGGTGGAGGAGGTGCAGTTGTAGGACTTGGGCTTGGAGGCGTTGGACTTGGGCTGAGGA GGTGGTGGTGGTGGAGGAGGAGGAGGTTTTGATGGGCTGTTTGGAGGGAGAGGAGGGACGGAGGAAAGTTGATGT TGCGGGTTTGGGCGCGGGTTTCTTGCCGGGCGTGTAGTGCTGCTGAAGCGTAGAGAAGGCCGGTCTCGTCGTCAT CTTCGTCGTCGTCGTCGTCGTCGTCGTAGCCTTCTTCTTCTCTTCTTGCGGAGCAGATAGACCAGCCGTGACGGT ACTCCTGGCACGCGCATGCATCGCACCACGTCTAACCCCGACGCCCGACCCGGGAACAGCATCCGTCCGACTCGA CGTCGACGCCGAACGCCCCAGCGTCATCGCGCTCCGACCCTTCGTCGTCGTCGTCGTCGTCGGTGGAGGAGGAGG CGGCATCATGGCAGCGGATCCCGGTCTCGCCGCACCACCGCGCGGAGTCGGAGTCGCCGTCGTGGACCGCGCGCT CCCTCCCGGCTTCACCGGCAGCCGGCTGGGCGAGATCGACTCTCCCGGCCTCGGACCCGTGCGCTGGGATCGACT GCGCTGA |