© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06465 |
| Gene name | |
| Location | scaffold_08:152774..154967 |
| Strand | + |
| Gene length (bp) | 2193 |
| Transcript length (bp) | 1998 |
| Coding sequence length (bp) | 1998 |
| Protein length (aa) | 666 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04049 | ANAPC8 | Anaphase promoting complex subunit 8 / Cdc23 | 2.0E-52 | 11 | 181 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.5E-02 | 373 | 405 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 6.7E-05 | 407 | 437 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 3.4E-02 | 532 | 558 |
| PF13414 | TPR_11 | TPR repeat | 1.2E-06 | 413 | 452 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 6.2E-05 | 412 | 451 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0030071 | regulation of mitotic metaphase/anaphase transition | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0010965 | regulation of mitotic sister chromatid separation | No |
| GO:0005488 | binding | No |
| GO:1905818 | regulation of chromosome separation | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:1901990 | regulation of mitotic cell cycle phase transition | No |
| GO:0050789 | regulation of biological process | No |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:1990234 | transferase complex | No |
| GO:0051983 | regulation of chromosome segregation | No |
| GO:1902494 | catalytic complex | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0007346 | regulation of mitotic cell cycle | No |
| GO:0033045 | regulation of sister chromatid segregation | No |
| GO:0005575 | cellular_component | No |
| GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | No |
| GO:0003674 | molecular_function | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0065007 | biological regulation | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0008150 | biological_process | No |
| GO:0033044 | regulation of chromosome organization | No |
| GO:0051128 | regulation of cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06465 MAHSVLEVGHLRAALQDAVIQCSERCLYQSAKWAAELLNALPEADGTDQDTHSPDISASNQFPDEAAMEAREHHR YLLAKSLFDCKEYDRCAAVFLPEPILSSVLAPRSDVPAASSSRRAKGKGKATASRRGPAVAFLPKLSQKSLFLAL YAKLISGEKRKNEESEMVMGPQDLGTVVNKELLVIGRYLTAWFEERTVEDDEVVGSHGWLEYLYGMVLAKEKNDA KAMEFLVRSVHKFPMNWGCWLEMTSLVSRVDELNRILKHCPQNIVSFIFHVHTSLELYQQSPSLANSLEQLLSIF PNSAFLLTCSALLAYHAKDLIAAEQHFSRLVALHPHRLDSLDNYSNILYVLNMRPKLAFVAHLCSSVDKFRPESC VVIGNYYSLLSMHDKAVQHFRRALTLDRSCLSAWTLMGHEYVELKNTHAAIESYRRAVDVNRRDYRAWYGLGQTY EMLEMHTYSLWYYKKAAGLRPWDGKMWLAVGSCLHKMGRERDGIKALKRALLADAYYDSGSSFGSGGDLVGARGA AGHMDPDILLQIAVMYDQLDEEDEAKAYMELCVAQEDGGSAAAADGAGESTMKHNESSAGSDDDPDRQDGQGEGT GVTAATSKARMWLARYAMRTEDYTTANRLATELCHDGVEVEEAKALVREIRSILDSAGGVYGSAS* |
| Coding | >Ophcf2|06465 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTACAGGATGCCGTCATCCAGTGCTCAGAGAGA TGTCTCTACCAGTCGGCCAAATGGGCTGCGGAGCTTCTCAACGCCTTGCCCGAGGCAGACGGCACTGATCAGGAC ACCCATAGTCCAGACATCTCAGCCTCGAACCAGTTCCCGGACGAGGCCGCTATGGAGGCACGAGAGCACCACCGA TACCTGCTAGCAAAGTCCCTTTTTGATTGCAAAGAGTATGACCGCTGCGCCGCCGTCTTTCTTCCCGAACCCATC CTCTCCTCAGTCCTCGCCCCGCGCTCCGATGTGCCCGCCGCGTCATCGTCTCGAAGAGCCAAGGGCAAAGGAAAG GCGACGGCCTCAAGGCGCGGTCCGGCCGTAGCTTTTTTGCCAAAACTCAGCCAGAAAAGTCTCTTTCTTGCCCTA TACGCCAAGCTCATCTCGGGTGAGAAGCGGAAGAACGAGGAGTCGGAAATGGTCATGGGCCCCCAAGACCTCGGC ACCGTCGTCAACAAGGAATTGCTCGTCATCGGACGCTACCTGACGGCATGGTTCGAAGAACGGACGGTGGAAGAC GACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTATCTATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCC AAGGCCATGGAGTTTCTCGTCCGCAGCGTTCACAAGTTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCT CTCGTCTCCCGAGTCGACGAGCTCAACCGCATCTTGAAGCATTGCCCGCAGAACATCGTCTCCTTCATATTCCAC GTCCACACTTCTCTGGAGTTGTACCAGCAGTCCCCTAGCCTGGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTT CCAAATTCAGCTTTTCTCCTCACTTGCAGCGCCCTGTTGGCGTACCACGCCAAAGACTTGATAGCCGCCGAGCAG CATTTCAGCCGGCTCGTCGCTCTCCACCCGCATCGACTAGACTCCCTCGACAACTACTCCAACATACTCTATGTT CTAAACATGCGGCCCAAGTTGGCCTTTGTCGCCCACCTCTGCTCCAGCGTCGACAAGTTTCGACCCGAGTCTTGC GTGGTGATAGGAAACTACTATTCCCTTCTTTCGATGCACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACA TTGGACAGATCTTGCCTCTCGGCATGGACCTTGATGGGCCATGAATACGTCGAGCTCAAGAACACGCACGCTGCC ATCGAGTCGTACCGGCGAGCCGTTGACGTTAACCGGCGTGACTATCGTGCCTGGTACGGCCTAGGCCAGACGTAC GAGATGCTCGAGATGCACACCTATTCGCTGTGGTACTACAAGAAAGCGGCTGGCCTGCGGCCGTGGGACGGCAAG ATGTGGCTGGCCGTAGGCTCGTGTCTGCACAAGATGGGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCC CTGTTGGCCGACGCCTATTACGACTCGGGGAGCAGCTTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGGGGAGCT GCCGGCCACATGGACCCGGACATCCTACTGCAGATCGCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCC AAGGCTTACATGGAGCTCTGTGTGGCCCAAGAGGATGGTGGGTCAGCGGCAGCGGCTGACGGCGCGGGCGAGTCG ACGATGAAGCACAACGAATCTTCGGCCGGCTCCGACGACGATCCGGACCGGCAAGACGGTCAAGGCGAGGGCACG GGCGTGACGGCCGCGACCAGCAAGGCGCGCATGTGGCTGGCCAGATACGCCATGCGCACGGAAGACTATACAACC GCCAACCGGCTCGCCACGGAGCTGTGTCACGACGGAGTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATC AGATCCATCCTGGACTCCGCCGGGGGCGTCTACGGCTCTGCCAGCTAG |
| Transcript | >Ophcf2|06465 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTACAGGATGCCGTCATCCAGTGCTCAGAGAGA TGTCTCTACCAGTCGGCCAAATGGGCTGCGGAGCTTCTCAACGCCTTGCCCGAGGCAGACGGCACTGATCAGGAC ACCCATAGTCCAGACATCTCAGCCTCGAACCAGTTCCCGGACGAGGCCGCTATGGAGGCACGAGAGCACCACCGA TACCTGCTAGCAAAGTCCCTTTTTGATTGCAAAGAGTATGACCGCTGCGCCGCCGTCTTTCTTCCCGAACCCATC CTCTCCTCAGTCCTCGCCCCGCGCTCCGATGTGCCCGCCGCGTCATCGTCTCGAAGAGCCAAGGGCAAAGGAAAG GCGACGGCCTCAAGGCGCGGTCCGGCCGTAGCTTTTTTGCCAAAACTCAGCCAGAAAAGTCTCTTTCTTGCCCTA TACGCCAAGCTCATCTCGGGTGAGAAGCGGAAGAACGAGGAGTCGGAAATGGTCATGGGCCCCCAAGACCTCGGC ACCGTCGTCAACAAGGAATTGCTCGTCATCGGACGCTACCTGACGGCATGGTTCGAAGAACGGACGGTGGAAGAC GACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTATCTATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCC AAGGCCATGGAGTTTCTCGTCCGCAGCGTTCACAAGTTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCT CTCGTCTCCCGAGTCGACGAGCTCAACCGCATCTTGAAGCATTGCCCGCAGAACATCGTCTCCTTCATATTCCAC GTCCACACTTCTCTGGAGTTGTACCAGCAGTCCCCTAGCCTGGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTT CCAAATTCAGCTTTTCTCCTCACTTGCAGCGCCCTGTTGGCGTACCACGCCAAAGACTTGATAGCCGCCGAGCAG CATTTCAGCCGGCTCGTCGCTCTCCACCCGCATCGACTAGACTCCCTCGACAACTACTCCAACATACTCTATGTT CTAAACATGCGGCCCAAGTTGGCCTTTGTCGCCCACCTCTGCTCCAGCGTCGACAAGTTTCGACCCGAGTCTTGC GTGGTGATAGGAAACTACTATTCCCTTCTTTCGATGCACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACA TTGGACAGATCTTGCCTCTCGGCATGGACCTTGATGGGCCATGAATACGTCGAGCTCAAGAACACGCACGCTGCC ATCGAGTCGTACCGGCGAGCCGTTGACGTTAACCGGCGTGACTATCGTGCCTGGTACGGCCTAGGCCAGACGTAC GAGATGCTCGAGATGCACACCTATTCGCTGTGGTACTACAAGAAAGCGGCTGGCCTGCGGCCGTGGGACGGCAAG ATGTGGCTGGCCGTAGGCTCGTGTCTGCACAAGATGGGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCC CTGTTGGCCGACGCCTATTACGACTCGGGGAGCAGCTTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGGGGAGCT GCCGGCCACATGGACCCGGACATCCTACTGCAGATCGCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCC AAGGCTTACATGGAGCTCTGTGTGGCCCAAGAGGATGGTGGGTCAGCGGCAGCGGCTGACGGCGCGGGCGAGTCG ACGATGAAGCACAACGAATCTTCGGCCGGCTCCGACGACGATCCGGACCGGCAAGACGGTCAAGGCGAGGGCACG GGCGTGACGGCCGCGACCAGCAAGGCGCGCATGTGGCTGGCCAGATACGCCATGCGCACGGAAGACTATACAACC GCCAACCGGCTCGCCACGGAGCTGTGTCACGACGGAGTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATC AGATCCATCCTGGACTCCGCCGGGGGCGTCTACGGCTCTGCCAGCTAG |
| Gene | >Ophcf2|06465 ATGGCGCACAGTGTTCTCGAGGTCGGCCATCTCCGGGCGGCGCTACAGGATGCCGTCATCCAGTGCTCAGAGAGA TGTCTCTACCAGTCGGCCAAATGGTAGCCTCTTCCTGCTCGCTGCTCCTCGCCTCTGCCTGCTGACGGCCTCCGC TGATGTTTTATTGCTGACAAAACACGCTGTAGGGCTGCGGAGCTTCTCAACGCCTTGCCCGAGGCAGACGGCACT GATCAGGACACCCATAGTCCAGACATCTCAGCCTCGAACCAGTTCCCGGACGAGGCCGCTATGGAGGCACGAGAG CACCACCGATACCTGCTAGCAAAGTCCCTTTTTGATTGCAAAGAGTATGACCGCTGCGCCGCCGTCTTTCTTCCC GAACCCATCCTCTCCTCAGTCCTCGCCCCGCGCTCCGATGTGCCCGCCGCGTCATCGTCTCGAAGAGCCAAGGGC AAAGGAAAGGCGACGGCCTCAAGGCGCGGTCCGGCCGTAGCTTTTTTGCCAAAACTCAGCCAGAAAAGTCTCTTT CTTGCCCTATACGCCAAGCTCATCTCGGGTGAGAAGCGGAAGAACGAGGAGTCGGAAATGGTCATGGGCCCCCAA GACCTCGGCACCGTCGTCAACAAGGAATTGCTCGTCATCGGACGCTACCTGACGGCATGGTTCGAAGAACGGACG GTGGAAGACGACGAGGTCGTCGGCAGTCATGGCTGGCTCGAGTATCTGTACGTGCTCGCCACGCACTCTGGCGGC TGGCGGCTGACATGTCTGGACGCAGATACGGCATGGTCTTGGCCAAGGAGAAGAACGACGCCAAGGCCATGGAGT TTCTCGTCCGCAGCGTTCACAAGTTCCCCATGAATTGGGGCTGCTGGCTGGAGATGACGTCTCTCGTCTCCCGAG TCGACGAGGTTAGTCCAGACCTGATTGGGATGCTCGGATGAACCACTGATGAGAGACCGACGGCAGCTCAACCGC ATCTTGAAGCATTGCCCGCAGAACATCGTCTCCTTCATATTCCACGTCCACACTTCTCTGGAGTTGTACCAGCAG TCCCCTAGCCTGGCCAACAGCCTCGAGCAGCTGCTTTCCATCTTTCCAAATTCAGCTTTTCTCCTCACTTGCAGC GCCCTGTTGGCGTACCACGCCAAAGACTTGATAGCCGCCGAGCAGCATTTCAGCCGGCTCGTCGCTCTCCACCCG CATCGACTAGACTCCCTCGACAACTACTCCAACATACTCTATGTTCTAAACATGCGGCCCAAGTTGGCCTTTGTC GCCCACCTCTGCTCCAGCGTCGACAAGTTTCGACCCGAGTCTTGCGTGGTGATAGGAAACTACTATTCCCTTCTT TCGATGCACGATAAGGCAGTGCAACACTTTCGGAGGGCATTGACATTGGACAGATCTTGCCTCTCGGCATGGACC TTGATGGGCCATGAATACGTCGAGCTCAAGAACACGCACGCTGCCATCGAGTCGTACCGGCGAGCCGTTGACGTT AACCGGCGTGACTATCGTGCCTGGTACGGCCTAGGCCAGACGTACGAGATGCTCGAGATGCACACCTATTCGCTG TGGTACTACAAGAAAGCGGCTGGCCTGCGGCCGTGGGACGGCAAGATGTGGCTGGCCGTAGGCTCGTGTCTGCAC AAGATGGGCCGGGAACGGGACGGCATCAAGGCCCTCAAGCGAGCCCTGTTGGCCGACGCCTATTACGACTCGGGG AGCAGCTTCGGCAGCGGAGGCGACCTCGTCGGCGCCCGGGGAGCTGCCGGCCACATGGACCCGGACATCCTACTG CAGATCGCCGTTATGTACGACCAGCTGGACGAGGAGGACGAGGCCAAGGCTTACATGGAGCTCTGTGTGGCCCAA GAGGATGGTGGGTCAGCGGCAGCGGCTGACGGCGCGGGCGAGTCGACGATGAAGCACAACGAATCTTCGGCCGGC TCCGACGACGATCCGGACCGGCAAGACGGTCAAGGCGAGGGCACGGGCGTGACGGCCGCGACCAGCAAGGCGCGC ATGTGGCTGGCCAGATACGCCATGCGCACGGAAGACTATACAACCGCCAACCGGCTCGCCACGGAGCTGTGTCAC GACGGAGTCGAGGTCGAGGAGGCCAAGGCCCTGGTGCGGGAGATCAGATCCATCCTGGACTCCGCCGGGGGCGTC TACGGCTCTGCCAGCTAG |