© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06451 |
| Gene name | |
| Location | scaffold_08:5100..6227 |
| Strand | + |
| Gene length (bp) | 1127 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01105 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD | 4.2E-48 | 49 | 231 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 204 | 226 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06451 MRRVLCSRVTSPKGCSPDTAGLIVRVRNGLPTIAAGVFACLVTNVVATALTYKLEAGEKACFYAETNKENEKIAF YFAVQSGGSFDIDYRVEGPDSKIILEGEKERQGDFVFSAQKTGEYSFCFDNEMSTFTEKMIDIEISSEHEARTAQ LPSKQGTSPEQTSVLEESIFKISGQLSTISRNQKYFRTRENRNFSTVNSTEKRIVNFSVIQICLIVCMGALQVLV VRFFFQGARKGYV* |
| Coding | >Ophcf2|06451 ATGAGACGCGTATTATGCTCAAGGGTCACGTCACCTAAAGGTTGCTCCCCAGACACTGCAGGCCTTATTGTCCGC GTTCGCAATGGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTG ACGTACAAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTT TATTTTGCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTC GAGGGCGAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGAC AACGAGATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAG CTTCCATCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAA CTATCTACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACA GAGAAACGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTC GTCAGGTTCTTCTTCCAGGGAGCACGCAAAGGCTATGTATGA |
| Transcript | >Ophcf2|06451 ATGAGACGCGTATTATGCTCAAGGGTCACGTCACCTAAAGGTTGCTCCCCAGACACTGCAGGCCTTATTGTCCGC GTTCGCAATGGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTG ACGTACAAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTT TATTTTGCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTC GAGGGCGAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGAC AACGAGATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAG CTTCCATCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAA CTATCTACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACA GAGAAACGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTC GTCAGGTTCTTCTTCCAGGGAGCACGCAAAGGCTATGTATGA |
| Gene | >Ophcf2|06451 ATGAGACGCGTATTATGCTCAAGGGTCACGTCACCTAAAGGTTGCTCCCCAGACACTGCAGGGTAAGCTGCGGCG CGAAGGTGTGGCTAGTACAAGGTAAAGCTGTCAGCCTGTCACCCGTGGCCCGTGGGCCGTGGCCCGTGGGCCGTG GTGCCGGTCGGTAAGGGGTCGGCGCTAAGAAAATTCCGAGCCGAAGCCATGTAATCGTGGCCTCAGTACTACAGT AGGTAGAGGCTAATCGACCTGGCTGAGTTTGGTCGTGTCTCCATCGCCTTCGACTGGCGACAAACCTCAGCCTTA TTGTCCGCGTTCGCAATGGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCA CGGCGCTGACGTACAAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGA TTGCGTTTTATTTTGCCGTAGGCTTTCTTCGCTGAGGCATCTGGGTCTTCTGTGCTTATTCTGACCGCATCATAG GTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGCGAG AAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAGATG AGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAGTCTGTTCACCCAGCGGCCCTACCGTCATACACAGG CATGCTGATTCTTTCATGGTGCAGAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCATCCAAGCAGGGAACATCT CCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCTACCATCTCGCGCAACCAG AAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAACGGATTGTCAACTTTAGC GTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGGTTCTTCTTCCAGGTATGT CCATAAGCCTATGATGATCGAGAGTAGTATCTGACAGCCTTTGCCAAACTCAGGGAGCACGCAAAGGCTATGTAT GA |