© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06430 |
| Gene name | |
| Location | scaffold_07:2411684..2412494 |
| Strand | + |
| Gene length (bp) | 810 |
| Transcript length (bp) | 681 |
| Coding sequence length (bp) | 681 |
| Protein length (aa) | 227 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06703 | SPC25 | Microsomal signal peptidase 25 kDa subunit (SPC25) | 3.3E-49 | 14 | 166 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006465 | signal peptide processing | Yes |
| GO:0005787 | signal peptidase complex | Yes |
| GO:0019538 | protein metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1905368 | peptidase complex | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0051604 | protein maturation | No |
| GO:0016485 | protein processing | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0006508 | proteolysis | No |
| GO:1902494 | catalytic complex | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 73 | 90 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 305.29 | 173.57 | 437.02 |
| Alive | In ants, during behavior modification | 333.81 | 185.34 | 482.28 |
| Dead | In ants, recently dead | 231.18 | 130.95 | 331.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.692649 | no |
| Alive | Dead | 0.021927 | yes |
| Dead | Fungus | 0.143723 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06430 MAASEKISVYNLADLKNTSDDAIPNYLNSLRFKQSHFLTDVRLALGYGAFAIAAAAFLWDYRIGFDATKVYTAVA VAIYAVVNTTLTFWITRVEKGIVYQGVSPDGEELSIATTVTKNDPTYRLTVTIKPRDSAPQVIKFTAPFATFFDE TGRFVAKPFQELLASSVPLIRKFDPKRATSNKIASQDLLDADPDLLDAVLAADPAKVTTSTASDAKSGGKRRKSA K* |
| Coding | >Ophcf2|06430 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATCTCGCTGACCTCAAGAACACGTCTGACGACGCCATCCCCAAC TACCTCAACTCCCTCCGCTTCAAGCAATCCCACTTCCTAACGGATGTCCGTCTCGCCCTCGGCTACGGCGCTTTT GCCATTGCGGCAGCTGCCTTTCTATGGGACTACCGTATCGGCTTCGACGCTACCAAGGTGTACACGGCCGTCGCC GTCGCCATCTATGCCGTCGTCAACACCACCCTGACCTTCTGGATTACCCGCGTCGAAAAGGGCATCGTCTACCAG GGTGTCTCTCCTGACGGCGAAGAGCTCTCCATCGCGACAACCGTCACCAAAAATGACCCAACCTACCGCCTCACC GTCACCATCAAACCCCGCGACTCCGCACCGCAAGTCATCAAATTCACCGCCCCCTTCGCCACATTTTTCGACGAG ACTGGCCGCTTCGTCGCCAAGCCCTTCCAGGAGCTGCTCGCCTCGTCCGTGCCCCTCATCCGCAAGTTCGATCCC AAGCGCGCAACCAGCAACAAGATTGCTTCTCAGGACCTGCTTGATGCCGACCCCGATCTTCTGGATGCCGTCTTG GCTGCTGATCCGGCCAAGGTCACCACCTCGACTGCTTCTGATGCTAAATCCGGCGGCAAGAGACGCAAGTCGGCC AAATAA |
| Transcript | >Ophcf2|06430 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATCTCGCTGACCTCAAGAACACGTCTGACGACGCCATCCCCAAC TACCTCAACTCCCTCCGCTTCAAGCAATCCCACTTCCTAACGGATGTCCGTCTCGCCCTCGGCTACGGCGCTTTT GCCATTGCGGCAGCTGCCTTTCTATGGGACTACCGTATCGGCTTCGACGCTACCAAGGTGTACACGGCCGTCGCC GTCGCCATCTATGCCGTCGTCAACACCACCCTGACCTTCTGGATTACCCGCGTCGAAAAGGGCATCGTCTACCAG GGTGTCTCTCCTGACGGCGAAGAGCTCTCCATCGCGACAACCGTCACCAAAAATGACCCAACCTACCGCCTCACC GTCACCATCAAACCCCGCGACTCCGCACCGCAAGTCATCAAATTCACCGCCCCCTTCGCCACATTTTTCGACGAG ACTGGCCGCTTCGTCGCCAAGCCCTTCCAGGAGCTGCTCGCCTCGTCCGTGCCCCTCATCCGCAAGTTCGATCCC AAGCGCGCAACCAGCAACAAGATTGCTTCTCAGGACCTGCTTGATGCCGACCCCGATCTTCTGGATGCCGTCTTG GCTGCTGATCCGGCCAAGGTCACCACCTCGACTGCTTCTGATGCTAAATCCGGCGGCAAGAGACGCAAGTCGGCC AAATAA |
| Gene | >Ophcf2|06430 ATGGCCGCCTCCGAGAAGATCAGCGTCTACAATCTCGCTGGTGGGCCTCTCTCTTCTTTCCAAGCCCACCAACTC AATCTCTCTTCCACAGACTAACCCTTTCCAGACCTCAAGAACACGTCTGACGACGCCATCCCCAACTACCTCAAC TCCCTCCGCTTCAAGCAATCCCACTTCCTAACGGATGTCCGTCTCGCCCTCGGCTACGGCGCTTTTGCCATTGCG GCAGCTGCCTTTCTATGGGACTACCGTATCGGCTTCGACGCTACCAAGGTGTACACGGCCGTCGCCGTCGCCATC TATGCCGTCGTCAACACCACCCTGACCTTCTGGATTACCCGCGTCGAAAAGGGCATCGTCTACCAGGGTGTCTCT CCTGACGGCGAAGAGGTATCAAATCTCCTCGCTCTCCATGCATTTCTCATCGTGAGCCAGTGACTGATCCCTCCC CAGCTCTCCATCGCGACAACCGTCACCAAAAATGACCCAACCTACCGCCTCACCGTCACCATCAAACCCCGCGAC TCCGCACCGCAAGTCATCAAATTCACCGCCCCCTTCGCCACATTTTTCGACGAGACTGGCCGCTTCGTCGCCAAG CCCTTCCAGGAGCTGCTCGCCTCGTCCGTGCCCCTCATCCGCAAGTTCGATCCCAAGCGCGCAACCAGCAACAAG ATTGCTTCTCAGGACCTGCTTGATGCCGACCCCGATCTTCTGGATGCCGTCTTGGCTGCTGATCCGGCCAAGGTC ACCACCTCGACTGCTTCTGATGCTAAATCCGGCGGCAAGAGACGCAAGTCGGCCAAATAA |