© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06413 |
| Gene name | |
| Location | scaffold_07:2299256..2300669 |
| Strand | - |
| Gene length (bp) | 1413 |
| Transcript length (bp) | 1359 |
| Coding sequence length (bp) | 1359 |
| Protein length (aa) | 453 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11309 | DUF3112 | Protein of unknown function (DUF3112) | 6.3E-06 | 279 | 343 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 91 | 109 | 18 |
| 2 | 122 | 144 | 22 |
| 3 | 157 | 179 | 22 |
| 4 | 200 | 222 | 22 |
| 5 | 237 | 259 | 22 |
| 6 | 280 | 302 | 22 |
| 7 | 317 | 336 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.01 | 0.0 | 0.12 |
| Alive | In ants, during behavior modification | 0.44 | 0.0 | 1.01 |
| Dead | In ants, recently dead | 0.08 | 0.0 | 0.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 1.0 | no |
| Alive | Dead | 1.0 | no |
| Dead | Fungus | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06413 MEAPMDAVTAPPGDAPPAPMEAPPDLPAMDMPPDPAAMMMPGAPPGAPPPGAPPGFPPGALPGAPPGLPPGPKDI INGPFFGLVPTPVEDGLPALVFLLIFAAGYFLHARQLSRNRKRRHKFLLTVPFIAFCQTRIFTCLFRFIWAFLKA PFPRGVVFMTLFFDNAGLPFVYGVNIVLAHRIVRVIQPAIGWHPVFNITVPVLLVTIPIILIASVIGLLVLFFAD QNKINQEFIFDMLEAFAVWKVLLAIMPIIWIFVACALPGPPPRNFGTGNLRFKTSLVVFSSVTLAIGQAVRLAAT ANPLLAFTGSAVFGKPMFYLIGFLLETFTVFSYVIFRFDNLFYVPDGARGPRDYERGMESAGWTTSRIKSAMAEL GFKHEFLRPPEYSDRAPIYALIYPSSEEGLEPSSSTAPASAGGRKPPPQYIERSVERQTRNQSAFSWDSTADAKT FI* |
| Coding | >Ophcf2|06413 ATGGAGGCTCCTATGGATGCAGTGACAGCGCCTCCTGGAGACGCGCCTCCCGCTCCCATGGAGGCGCCGCCCGAT CTACCCGCCATGGACATGCCACCGGATCCGGCCGCTATGATGATGCCGGGGGCTCCTCCCGGCGCTCCTCCCCCG GGTGCTCCTCCCGGGTTTCCTCCCGGCGCTCTGCCCGGCGCCCCTCCCGGTCTCCCTCCAGGTCCCAAGGACATC ATCAACGGGCCCTTCTTCGGCCTCGTTCCCACCCCCGTCGAGGACGGACTGCCGGCCCTCGTCTTCCTCCTCATC TTCGCTGCGGGCTACTTCTTACACGCACGTCAGTTGAGCCGGAACAGAAAGCGGCGTCACAAGTTCCTCTTAACT GTACCCTTCATCGCCTTTTGCCAGACGCGCATCTTCACTTGTCTCTTTCGCTTTATCTGGGCCTTTCTCAAGGCT CCTTTCCCCCGAGGCGTCGTTTTCATGACACTCTTCTTCGACAACGCTGGCCTCCCTTTTGTTTACGGCGTCAAC ATCGTCCTGGCGCATCGCATAGTCCGCGTCATTCAGCCTGCCATCGGCTGGCATCCCGTTTTCAACATCACCGTC CCAGTCTTGCTCGTCACCATCCCAATCATTCTCATTGCTTCCGTCATTGGACTGCTTGTCCTCTTCTTCGCCGAT CAAAACAAAATCAACCAAGAGTTTATCTTCGATATGCTCGAGGCCTTCGCAGTATGGAAGGTTTTGCTCGCCATC ATGCCTATCATATGGATCTTCGTCGCCTGCGCATTGCCAGGACCGCCCCCGAGGAACTTTGGAACCGGAAATCTC CGCTTCAAAACGTCGTTGGTCGTCTTCAGCTCCGTCACCCTGGCCATCGGACAGGCCGTGAGGCTCGCTGCGACG GCTAACCCCCTGTTGGCCTTTACCGGATCCGCTGTTTTCGGAAAGCCCATGTTCTACCTAATAGGCTTCTTGCTC GAAACCTTTACCGTCTTCTCATACGTAATCTTTCGGTTCGACAACCTTTTCTACGTCCCTGATGGCGCCCGAGGC CCTCGCGACTACGAAAGGGGAATGGAATCTGCCGGCTGGACGACTTCTCGGATCAAGTCTGCCATGGCTGAGCTG GGTTTCAAGCATGAGTTCTTGCGACCGCCCGAGTATTCGGATCGGGCGCCCATATACGCTCTTATATACCCATCT TCTGAGGAGGGCTTGGAGCCTTCAAGTTCGACTGCACCAGCGTCTGCGGGAGGTCGTAAGCCGCCACCGCAATAC ATAGAAAGAAGCGTGGAGCGGCAGACGAGAAACCAATCGGCCTTCAGCTGGGACTCGACGGCCGACGCAAAGACC TTTATATAA |
| Transcript | >Ophcf2|06413 ATGGAGGCTCCTATGGATGCAGTGACAGCGCCTCCTGGAGACGCGCCTCCCGCTCCCATGGAGGCGCCGCCCGAT CTACCCGCCATGGACATGCCACCGGATCCGGCCGCTATGATGATGCCGGGGGCTCCTCCCGGCGCTCCTCCCCCG GGTGCTCCTCCCGGGTTTCCTCCCGGCGCTCTGCCCGGCGCCCCTCCCGGTCTCCCTCCAGGTCCCAAGGACATC ATCAACGGGCCCTTCTTCGGCCTCGTTCCCACCCCCGTCGAGGACGGACTGCCGGCCCTCGTCTTCCTCCTCATC TTCGCTGCGGGCTACTTCTTACACGCACGTCAGTTGAGCCGGAACAGAAAGCGGCGTCACAAGTTCCTCTTAACT GTACCCTTCATCGCCTTTTGCCAGACGCGCATCTTCACTTGTCTCTTTCGCTTTATCTGGGCCTTTCTCAAGGCT CCTTTCCCCCGAGGCGTCGTTTTCATGACACTCTTCTTCGACAACGCTGGCCTCCCTTTTGTTTACGGCGTCAAC ATCGTCCTGGCGCATCGCATAGTCCGCGTCATTCAGCCTGCCATCGGCTGGCATCCCGTTTTCAACATCACCGTC CCAGTCTTGCTCGTCACCATCCCAATCATTCTCATTGCTTCCGTCATTGGACTGCTTGTCCTCTTCTTCGCCGAT CAAAACAAAATCAACCAAGAGTTTATCTTCGATATGCTCGAGGCCTTCGCAGTATGGAAGGTTTTGCTCGCCATC ATGCCTATCATATGGATCTTCGTCGCCTGCGCATTGCCAGGACCGCCCCCGAGGAACTTTGGAACCGGAAATCTC CGCTTCAAAACGTCGTTGGTCGTCTTCAGCTCCGTCACCCTGGCCATCGGACAGGCCGTGAGGCTCGCTGCGACG GCTAACCCCCTGTTGGCCTTTACCGGATCCGCTGTTTTCGGAAAGCCCATGTTCTACCTAATAGGCTTCTTGCTC GAAACCTTTACCGTCTTCTCATACGTAATCTTTCGGTTCGACAACCTTTTCTACGTCCCTGATGGCGCCCGAGGC CCTCGCGACTACGAAAGGGGAATGGAATCTGCCGGCTGGACGACTTCTCGGATCAAGTCTGCCATGGCTGAGCTG GGTTTCAAGCATGAGTTCTTGCGACCGCCCGAGTATTCGGATCGGGCGCCCATATACGCTCTTATATACCCATCT TCTGAGGAGGGCTTGGAGCCTTCAAGTTCGACTGCACCAGCGTCTGCGGGAGGTCGTAAGCCGCCACCGCAATAC ATAGAAAGAAGCGTGGAGCGGCAGACGAGAAACCAATCGGCCTTCAGCTGGGACTCGACGGCCGACGCAAAGACC TTTATATAA |
| Gene | >Ophcf2|06413 ATGGAGGCTCCTATGGATGCAGTGACAGCGCCTCCTGGAGACGCGCCTCCCGCTCCCATGGAGGCGCCGCCCGAT CTACCCGCCATGGACATGCCACCGGATCCGGCCGCTATGATGATGCCGGGGGCTCCTCCCGGCGCTCCTCCCCCG GGTGCTCCTCCCGGGTTTCCTCCCGGCGCTCTGCCCGGCGCCCCTCCCGGTCTCCCTCCAGGTCCCAAGGACATC ATCAACGGGCCCTTCTTCGGCCTCGTTCCCACCCCCGTCGAGGACGGACTGCCGGCCCTCGTCTTCCTCCTCATC TTCGCTGCGGGCTACTTCTTACACGCACGTCAGTTGAGCCGGAACAGAAAGCGGCGTCACAAGTTCCTCTTAACT GTACCCTTCATCGCCTTTTGCCAGACGCGCATCTTCACTTGTCTCTTTCGCTTTATCTGGGCCTTTCTCAAGGCT CCTTTCCCCCGAGGCGTCGTTTTCATGACACTCTTCTTCGACAACGCTGGGTTCGTATTTGCTACTTCTCTCTCA TCACTTCTCAGCTCACAATACATCTTCAGCCTCCCTTTTGTTTACGGCGTCAACATCGTCCTGGCGCATCGCATA GTCCGCGTCATTCAGCCTGCCATCGGCTGGCATCCCGTTTTCAACATCACCGTCCCAGTCTTGCTCGTCACCATC CCAATCATTCTCATTGCTTCCGTCATTGGACTGCTTGTCCTCTTCTTCGCCGATCAAAACAAAATCAACCAAGAG TTTATCTTCGATATGCTCGAGGCCTTCGCAGTATGGAAGGTTTTGCTCGCCATCATGCCTATCATATGGATCTTC GTCGCCTGCGCATTGCCAGGACCGCCCCCGAGGAACTTTGGAACCGGAAATCTCCGCTTCAAAACGTCGTTGGTC GTCTTCAGCTCCGTCACCCTGGCCATCGGACAGGCCGTGAGGCTCGCTGCGACGGCTAACCCCCTGTTGGCCTTT ACCGGATCCGCTGTTTTCGGAAAGCCCATGTTCTACCTAATAGGCTTCTTGCTCGAAACCTTTACCGTCTTCTCA TACGTAATCTTTCGGTTCGACAACCTTTTCTACGTCCCTGATGGCGCCCGAGGCCCTCGCGACTACGAAAGGGGA ATGGAATCTGCCGGCTGGACGACTTCTCGGATCAAGTCTGCCATGGCTGAGCTGGGTTTCAAGCATGAGTTCTTG CGACCGCCCGAGTATTCGGATCGGGCGCCCATATACGCTCTTATATACCCATCTTCTGAGGAGGGCTTGGAGCCT TCAAGTTCGACTGCACCAGCGTCTGCGGGAGGTCGTAAGCCGCCACCGCAATACATAGAAAGAAGCGTGGAGCGG CAGACGAGAAACCAATCGGCCTTCAGCTGGGACTCGACGGCCGACGCAAAGACCTTTATATAA |