Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06412
Gene name
Locationscaffold_07:2297730..2298684
Strand-
Gene length (bp)954
Transcript length (bp)783
Coding sequence length (bp)783
Protein length (aa) 261

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01956 EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like 4.7E-54 10 201

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 51 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 126 148 22
3 175 197 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06412
MAQTPVQTLHRDPQLFYWILIPITVVMVLTGVLRHYASVLMSAAPKRVDARTMREQRALARGHALRSNFHVLSQR
AFESRRQFLVDGYEAGTFLKDPDRKGQPPANPLSDPSQMDGMMSMMKNNMAMIIPNTLIMSWINAFFSGYVIMKL
PFPITIKFKSMLQAGVQTKDMDPRWMSSISWYFLCIFGLQFVYVFLLGSDNAASQMAQQMAAQQMPMGPMGGPGQ
DPDKQFKMEAENLAVVEHYSILDGVEERLLQGIKS*
Coding >Ophcf2|06412
ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCTCAGCTATTCTACTGGATTCTCATCCCCATCACCGTC
GTCATGGTCCTCACGGGCGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGAGTCGACGCT
AGGACCATGCGGGAGCAGCGCGCACTCGCCCGCGGTCACGCTCTGCGCTCCAATTTTCACGTTCTCTCCCAGCGC
GCGTTCGAGTCTCGACGCCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCGGATCGCAAG
GGACAGCCGCCTGCCAACCCGCTGAGCGATCCGAGTCAGATGGATGGCATGATGAGCATGATGAAGAACAACATG
GCCATGATCATTCCCAATACGCTCATTATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATCATGAAACTC
CCCTTCCCCATCACCATCAAGTTCAAGAGCATGCTGCAGGCCGGCGTGCAGACCAAGGACATGGATCCACGGTGG
ATGTCGAGCATCAGCTGGTACTTTCTGTGCATATTCGGCCTTCAGTTTGTCTACGTTTTTCTCCTCGGTAGCGAT
AACGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGACCTATGGGCGGTCCCGGACAA
GATCCGGACAAACAGTTCAAGATGGAGGCGGAAAACCTTGCCGTGGTGGAGCACTACTCCATCCTAGACGGCGTC
GAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG
Transcript >Ophcf2|06412
ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCTCAGCTATTCTACTGGATTCTCATCCCCATCACCGTC
GTCATGGTCCTCACGGGCGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGAGTCGACGCT
AGGACCATGCGGGAGCAGCGCGCACTCGCCCGCGGTCACGCTCTGCGCTCCAATTTTCACGTTCTCTCCCAGCGC
GCGTTCGAGTCTCGACGCCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCGGATCGCAAG
GGACAGCCGCCTGCCAACCCGCTGAGCGATCCGAGTCAGATGGATGGCATGATGAGCATGATGAAGAACAACATG
GCCATGATCATTCCCAATACGCTCATTATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATCATGAAACTC
CCCTTCCCCATCACCATCAAGTTCAAGAGCATGCTGCAGGCCGGCGTGCAGACCAAGGACATGGATCCACGGTGG
ATGTCGAGCATCAGCTGGTACTTTCTGTGCATATTCGGCCTTCAGTTTGTCTACGTTTTTCTCCTCGGTAGCGAT
AACGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGACCTATGGGCGGTCCCGGACAA
GATCCGGACAAACAGTTCAAGATGGAGGCGGAAAACCTTGCCGTGGTGGAGCACTACTCCATCCTAGACGGCGTC
GAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG
Gene >Ophcf2|06412
ATGGCCCAGACACCCGTGCAGACCCTTCACAGGGACCCTCAGCTATTGTCAGTCTTGCCCCCAGCACGTGTTCAC
GCTTCCCCCCAAGCTGACAAGACGTTGCCTCGCAGCTACTGGATTCTCATCCCCATCACCGTCGTCATGGTCCTC
ACGGGCGTGCTGCGCCACTATGCCTCGGTCCTCATGTCCGCGGCTCCCAAGCGAGTCGACGCTAGGACCATGCGG
GAGCAGCGCGCACTCGCCCGCGGTCACGCTCTGCGCTCCAATTTTCACGTTCTCTCCCAGCGCGCGTTCGAGTCT
CGACGCCAGTTTCTGGTCGATGGCTACGAGGCGGGGACTTTTCTCAAGGATCCGGATCGCAAGGGACAGCCGCCT
GCCAACCCGCTGAGCGATCCGAGTCAGATGGATGGCATGATGAGCATGATGAAGAACAACATGGCCATGATCATT
CCCAATACGCTCATTATGAGCTGGATCAATGCTTTTTTCAGCGGCTACGTCATCAGTAGTTTTCCCAATCATCAA
CCCGCTCCACGATCACAACTGACATCCATCAGTGAAACTCCCCTTCCCCATCACCATCAAGTTCAAGAGCATGCT
GCAGGCCGGCGTGCAGACCAAGGACATGGATCCACGGTGGATGTCGAGCATCAGCTGGTACTTTCTGTGCATATT
CGGCCTTCAGTTTGTCTACGTTTTTCTCCTCGGTAGCGATAACGGTGAGCCGCTCTTCCTGTCAGGTGTTGGCCT
GTGTCCCGCGCTGATCCGACGACAGCCGCCAGCCAGATGGCTCAGCAGATGGCCGCCCAGCAGATGCCCATGGGA
CCTATGGGCGGTCCCGGACAAGATCCGGACAAACAGTTCAAGATGGAGGCGGAAAACCTTGCCGTGGTGGAGCAC
TACTCCATCCTAGACGGCGTCGAAGAGCGGCTTCTCCAGGGTATCAAGTCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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