© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06400 |
| Gene name | |
| Location | scaffold_07:2277561..2278753 |
| Strand | - |
| Gene length (bp) | 1192 |
| Transcript length (bp) | 1080 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF19445 | eIF3h_C | C-terminal region of eIF3h | 1.9E-38 | 146 | 351 |
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 9.0E-07 | 10 | 132 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear export signal | 0.7879 | 0.5926 | 0.0083 | 0.048 | 0.1467 | 0.0243 | 0.0751 | 0.1721 | 0.0472 | 0.0146 |
| Orthofinder run ID | 4 |
| Orthogroup | 2884 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06400 MDETAKDVPLQAVQVEALVVMKIAKHCSSTFPTTATGMTVGMDQNGLLEITNLFPFPSVEGAAVDGHQNDASSLA AAAPRQKANMAYQTDMIRHLKEVNVDANNVGWYTSATMGNFINLSFIENQYHYQKDNDRTVALVYDASKSSQGNL TLRAFRLTAAFVNAYKESKFTTENLQKSKLTFRDILIELPITIHNSHLLTSFLHQIASPSQDEVEPPSSLAEVER SAVKPPLYPSIDSLDVSIDPFLEKTCDFLLESIESHYTDLNNFQFYQRQLGREQAKITQWQIKRKAENAQRALAK QPPLPEDEWQRLYKLPQEPSRLEGMLNAKQVEQYSKQVDGFTANVTAKMFAVRENLLPQ* |
| Coding | >Ophcf2|06400 ATGGACGAAACGGCCAAGGATGTGCCCTTGCAGGCGGTTCAGGTCGAGGCCCTGGTGGTCATGAAGATTGCCAAG CACTGCTCCTCGACTTTTCCGACGACGGCGACGGGCATGACGGTTGGCATGGATCAGAACGGTCTTCTTGAGATC ACAAACTTGTTTCCCTTTCCATCAGTCGAAGGCGCTGCCGTCGATGGTCACCAGAACGATGCGTCCTCGCTCGCA GCCGCCGCGCCACGGCAAAAGGCCAATATGGCCTATCAGACAGACATGATCCGTCATCTCAAAGAGGTCAACGTC GACGCTAACAACGTCGGCTGGTACACGAGCGCCACCATGGGTAACTTTATCAACCTGTCGTTTATCGAGAACCAG TATCACTACCAAAAAGACAACGACCGCACCGTCGCCCTCGTCTATGATGCCAGCAAAAGCTCACAAGGGAATCTT ACTCTACGCGCCTTTCGTTTAACGGCGGCATTCGTCAACGCCTACAAGGAGTCCAAGTTTACGACGGAAAATCTG CAAAAGTCGAAGCTTACTTTCCGCGACATTCTCATCGAGCTCCCCATCACCATTCACAACTCGCATCTCCTCACC TCCTTCCTCCACCAAATCGCGTCGCCGTCGCAGGATGAGGTCGAGCCACCCAGCTCGCTTGCAGAAGTGGAGCGC AGCGCCGTCAAACCGCCTCTGTATCCGTCCATCGACAGCCTCGACGTCTCCATCGACCCGTTTCTCGAGAAGACG TGTGACTTTTTGCTGGAAAGCATCGAGTCGCATTACACAGACCTCAACAACTTTCAATTCTACCAGCGGCAACTG GGGCGAGAGCAGGCCAAGATTACGCAGTGGCAGATCAAGCGCAAGGCGGAGAATGCGCAGCGGGCGTTGGCCAAG CAGCCGCCGCTGCCCGAGGACGAGTGGCAGCGGCTGTACAAGCTGCCACAGGAGCCGAGCCGGTTGGAGGGGATG CTCAATGCGAAGCAGGTGGAACAGTACAGCAAGCAGGTCGACGGCTTCACCGCCAACGTGACGGCCAAAATGTTT GCGGTTCGGGAGAATCTGCTACCGCAGTAG |
| Transcript | >Ophcf2|06400 ATGGACGAAACGGCCAAGGATGTGCCCTTGCAGGCGGTTCAGGTCGAGGCCCTGGTGGTCATGAAGATTGCCAAG CACTGCTCCTCGACTTTTCCGACGACGGCGACGGGCATGACGGTTGGCATGGATCAGAACGGTCTTCTTGAGATC ACAAACTTGTTTCCCTTTCCATCAGTCGAAGGCGCTGCCGTCGATGGTCACCAGAACGATGCGTCCTCGCTCGCA GCCGCCGCGCCACGGCAAAAGGCCAATATGGCCTATCAGACAGACATGATCCGTCATCTCAAAGAGGTCAACGTC GACGCTAACAACGTCGGCTGGTACACGAGCGCCACCATGGGTAACTTTATCAACCTGTCGTTTATCGAGAACCAG TATCACTACCAAAAAGACAACGACCGCACCGTCGCCCTCGTCTATGATGCCAGCAAAAGCTCACAAGGGAATCTT ACTCTACGCGCCTTTCGTTTAACGGCGGCATTCGTCAACGCCTACAAGGAGTCCAAGTTTACGACGGAAAATCTG CAAAAGTCGAAGCTTACTTTCCGCGACATTCTCATCGAGCTCCCCATCACCATTCACAACTCGCATCTCCTCACC TCCTTCCTCCACCAAATCGCGTCGCCGTCGCAGGATGAGGTCGAGCCACCCAGCTCGCTTGCAGAAGTGGAGCGC AGCGCCGTCAAACCGCCTCTGTATCCGTCCATCGACAGCCTCGACGTCTCCATCGACCCGTTTCTCGAGAAGACG TGTGACTTTTTGCTGGAAAGCATCGAGTCGCATTACACAGACCTCAACAACTTTCAATTCTACCAGCGGCAACTG GGGCGAGAGCAGGCCAAGATTACGCAGTGGCAGATCAAGCGCAAGGCGGAGAATGCGCAGCGGGCGTTGGCCAAG CAGCCGCCGCTGCCCGAGGACGAGTGGCAGCGGCTGTACAAGCTGCCACAGGAGCCGAGCCGGTTGGAGGGGATG CTCAATGCGAAGCAGGTGGAACAGTACAGCAAGCAGGTCGACGGCTTCACCGCCAACGTGACGGCCAAAATGTTT GCGGTTCGGGAGAATCTGCTACCGCAGTAG |
| Gene | >Ophcf2|06400 ATGGACGAAACGGCCAAGGATGTGCCCTTGCAGGCGGTTCAGGTCGAGGCCCTGGTGAGTTTCGGCTCTTTGTGG CGCTCTCGTCGCTCGGATAGATGCTTATGACGATGCGCAGGTGGTCATGAAGATTGCCAAGCACTGCTCCTCGAC TTTTCCGACGACGGCGACGGGCATGACGGTTGGCATGGATCAGAACGGTCTTCTTGAGATCACAAACTTGTTTCC CTTTCCATCAGTCGAAGGCGCTGCCGTCGATGGTCACCAGAACGATGCGTCCTCGCTCGCAGCCGCCGCGCCACG GCAAAAGGCCAATATGGCCTATCAGACAGACATGATCCGTCATCTCAAAGAGGTCAACGTCGACGCTAACAACGT CGGCTGGTACACGAGCGCCACCATGGGTAACTTTATCAACCTGTCGTTTATCGAGAACCAGTATCACTACCAAAA AGACAACGACCGCACCGTCGCCCTCGTCTATGATGCCAGCAAAAGCTCACAAGGGAATCTTACTCTACGCGCCTT TCGTTTAACGGCGGCATTCGTCAACGCCTACAAGGAGTCCAAGTTTACGACGGAAAAGTGAGTCAGGCGGCGCTT CGTGTTGTGTGACGATGGTTGACAAGAGCGCAGTCTGCAAAAGTCGAAGCTTACTTTCCGCGACATTCTCATCGA GCTCCCCATCACCATTCACAACTCGCATCTCCTCACCTCCTTCCTCCACCAAATCGCGTCGCCGTCGCAGGATGA GGTCGAGCCACCCAGCTCGCTTGCAGAAGTGGAGCGCAGCGCCGTCAAACCGCCTCTGTATCCGTCCATCGACAG CCTCGACGTCTCCATCGACCCGTTTCTCGAGAAGACGTGTGACTTTTTGCTGGAAAGCATCGAGTCGCATTACAC AGACCTCAACAACTTTCAATTCTACCAGCGGCAACTGGGGCGAGAGCAGGCCAAGATTACGCAGTGGCAGATCAA GCGCAAGGCGGAGAATGCGCAGCGGGCGTTGGCCAAGCAGCCGCCGCTGCCCGAGGACGAGTGGCAGCGGCTGTA CAAGCTGCCACAGGAGCCGAGCCGGTTGGAGGGGATGCTCAATGCGAAGCAGGTGGAACAGTACAGCAAGCAGGT CGACGGCTTCACCGCCAACGTGACGGCCAAAATGTTTGCGGTTCGGGAGAATCTGCTACCGCAGTAG |