Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06397
Gene name
Locationscaffold_07:2271791..2272544
Strand+
Gene length (bp)753
Transcript length (bp)669
Coding sequence length (bp)669
Protein length (aa) 223

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07798 CCDC90-like Coiled-coil domain-containing protein 90-like 7.8E-56 47 221

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 199 221 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06397
MATTTTTTTTTVPRFLLPRLSWTARSWTVSGRRRFGTTTVRARDHHFDTLKFVRRMQSEGFTEEQSVAMMKVLND
VIEESIQNLTRTMVLREEAAKATYTQKVDFAKLRSELLSADSSESNTTRSAHERLTNDIAKLSSRLRDEISRTQA
SVRLDLNLEKGRIREEAVGQELKIKETETKIEQEVAALREKLELVKFQTLQWLMGVCTGFAALLLGAWRLLM*
Coding >Ophcf2|06397
ATGGCGACGACGACGACGACGACGACGACGACGGTGCCTCGCTTCTTACTTCCGCGACTGAGCTGGACGGCGAGG
TCATGGACGGTCTCCGGGCGGCGGCGGTTCGGGACGACGACGGTTCGGGCGAGGGATCATCACTTTGATACGCTC
AAGTTTGTGAGGCGGATGCAGAGTGAGGGGTTTACCGAGGAGCAGAGTGTTGCCATGATGAAGGTGCTCAACGAT
GTCATCGAGGAGAGCATCCAGAACCTGACGAGAACAATGGTCCTCCGCGAAGAAGCCGCAAAGGCAACCTACACG
CAAAAAGTCGACTTCGCCAAACTCCGATCCGAACTCCTATCAGCCGACAGCAGCGAATCCAACACGACGCGCAGC
GCTCACGAGCGTCTGACCAACGACATCGCCAAGCTATCCAGCCGCCTCCGCGACGAAATCTCCCGCACGCAGGCC
AGCGTGCGCCTGGACCTGAACCTCGAGAAGGGGAGGATCCGCGAGGAGGCCGTCGGCCAGGAACTCAAGATCAAG
GAGACGGAGACCAAGATCGAGCAGGAGGTGGCCGCCCTGAGGGAGAAGTTGGAGCTGGTCAAGTTTCAGACGTTG
CAGTGGCTCATGGGGGTTTGTACGGGGTTTGCGGCTTTGTTGCTGGGGGCTTGGAGGCTTTTGATGTGA
Transcript >Ophcf2|06397
ATGGCGACGACGACGACGACGACGACGACGACGGTGCCTCGCTTCTTACTTCCGCGACTGAGCTGGACGGCGAGG
TCATGGACGGTCTCCGGGCGGCGGCGGTTCGGGACGACGACGGTTCGGGCGAGGGATCATCACTTTGATACGCTC
AAGTTTGTGAGGCGGATGCAGAGTGAGGGGTTTACCGAGGAGCAGAGTGTTGCCATGATGAAGGTGCTCAACGAT
GTCATCGAGGAGAGCATCCAGAACCTGACGAGAACAATGGTCCTCCGCGAAGAAGCCGCAAAGGCAACCTACACG
CAAAAAGTCGACTTCGCCAAACTCCGATCCGAACTCCTATCAGCCGACAGCAGCGAATCCAACACGACGCGCAGC
GCTCACGAGCGTCTGACCAACGACATCGCCAAGCTATCCAGCCGCCTCCGCGACGAAATCTCCCGCACGCAGGCC
AGCGTGCGCCTGGACCTGAACCTCGAGAAGGGGAGGATCCGCGAGGAGGCCGTCGGCCAGGAACTCAAGATCAAG
GAGACGGAGACCAAGATCGAGCAGGAGGTGGCCGCCCTGAGGGAGAAGTTGGAGCTGGTCAAGTTTCAGACGTTG
CAGTGGCTCATGGGGGTTTGTACGGGGTTTGCGGCTTTGTTGCTGGGGGCTTGGAGGCTTTTGATGTGA
Gene >Ophcf2|06397
ATGGCGACGACGACGACGACGACGACGACGACGGTGCCTCGCTTCTTACTTCCGCGACTGAGCTGGACGGCGAGG
TCATGGACGGTCTCCGGGCGGCGGCGGTTCGGGACGACGACGGTTCGGGCGAGGGATCATCACTTTGATACGCTC
AAGTTTGTGAGGCGGATGCAGAGTGAGGGGTTTACCGAGGAGCAGAGTGTTGCCATGATGAAGGTGCTCAACGAT
GTCATCGAGGAGAGGTGAGTTTCTTTTTCTGTTCAGAGCGAGACGGGCGAGGGACCTTGTTTGTGGGAGAGAATG
AAGGTTGGTTCTAACAGATGTAGCATCCAGAACCTGACGAGAACAATGGTCCTCCGCGAAGAAGCCGCAAAGGCA
ACCTACACGCAAAAAGTCGACTTCGCCAAACTCCGATCCGAACTCCTATCAGCCGACAGCAGCGAATCCAACACG
ACGCGCAGCGCTCACGAGCGTCTGACCAACGACATCGCCAAGCTATCCAGCCGCCTCCGCGACGAAATCTCCCGC
ACGCAGGCCAGCGTGCGCCTGGACCTGAACCTCGAGAAGGGGAGGATCCGCGAGGAGGCCGTCGGCCAGGAACTC
AAGATCAAGGAGACGGAGACCAAGATCGAGCAGGAGGTGGCCGCCCTGAGGGAGAAGTTGGAGCTGGTCAAGTTT
CAGACGTTGCAGTGGCTCATGGGGGTTTGTACGGGGTTTGCGGCTTTGTTGCTGGGGGCTTGGAGGCTTTTGATG
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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