© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06383 |
| Gene name | |
| Location | scaffold_07:2224326..2225003 |
| Strand | + |
| Gene length (bp) | 677 |
| Transcript length (bp) | 612 |
| Coding sequence length (bp) | 612 |
| Protein length (aa) | 204 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04777 | Evr1_Alr | Erv1 / Alr family | 1.1E-28 | 93 | 179 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016972 | thiol oxidase activity | Yes |
| GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 63.19 | 31.09 | 95.30 |
| Alive | In ants, during behavior modification | 79.11 | 40.64 | 117.58 |
| Dead | In ants, recently dead | 65.97 | 32.40 | 99.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.327636 | no |
| Alive | Dead | 0.361580 | no |
| Dead | Fungus | 0.879084 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06383 MARRTHVTLMLLVGLAFFFSVSYLYSGPGSLTARDAARLLNKVRNGPSQTRPSESEAGPGFRPDLGGLPDGLLDG ESIAPKLENATLKAELGRATWKFLHTMVAKYPEKPTPEDRKTLQLFFMAFGKLYPCGDCARHFRGLLKQMPPQTG SRNSAAGWLCEMHNQVNKRLEKSIFDCNNIGDFYDCGCGDDKKDGKKKDEGVK* |
| Coding | >Ophcf2|06383 ATGGCGCGTCGGACGCACGTCACCTTGATGCTCCTCGTCGGCCTCGCCTTCTTCTTCAGCGTCTCCTATCTTTAC TCCGGGCCGGGCTCCTTGACGGCACGGGATGCCGCTCGACTGCTGAACAAGGTCCGCAACGGGCCGTCCCAGACC CGCCCCTCCGAGTCCGAGGCCGGGCCGGGTTTCCGACCGGACCTGGGCGGTCTCCCCGATGGCCTGCTGGACGGT GAATCCATCGCGCCCAAGCTGGAAAATGCAACCTTGAAAGCCGAACTGGGTCGCGCCACATGGAAGTTCCTACAC ACCATGGTGGCCAAGTACCCCGAGAAGCCGACGCCGGAAGATCGCAAGACGCTGCAGCTCTTTTTCATGGCCTTT GGCAAGCTGTACCCCTGCGGCGACTGCGCGAGACACTTCCGCGGCCTTCTCAAGCAGATGCCGCCCCAGACGGGC AGCCGCAACTCGGCGGCTGGATGGCTATGCGAGATGCACAATCAGGTTAATAAGCGACTGGAAAAGTCCATCTTT GACTGCAACAACATCGGCGACTTTTACGACTGCGGGTGCGGAGACGATAAAAAGGACGGAAAGAAAAAGGACGAG GGGGTGAAGTAA |
| Transcript | >Ophcf2|06383 ATGGCGCGTCGGACGCACGTCACCTTGATGCTCCTCGTCGGCCTCGCCTTCTTCTTCAGCGTCTCCTATCTTTAC TCCGGGCCGGGCTCCTTGACGGCACGGGATGCCGCTCGACTGCTGAACAAGGTCCGCAACGGGCCGTCCCAGACC CGCCCCTCCGAGTCCGAGGCCGGGCCGGGTTTCCGACCGGACCTGGGCGGTCTCCCCGATGGCCTGCTGGACGGT GAATCCATCGCGCCCAAGCTGGAAAATGCAACCTTGAAAGCCGAACTGGGTCGCGCCACATGGAAGTTCCTACAC ACCATGGTGGCCAAGTACCCCGAGAAGCCGACGCCGGAAGATCGCAAGACGCTGCAGCTCTTTTTCATGGCCTTT GGCAAGCTGTACCCCTGCGGCGACTGCGCGAGACACTTCCGCGGCCTTCTCAAGCAGATGCCGCCCCAGACGGGC AGCCGCAACTCGGCGGCTGGATGGCTATGCGAGATGCACAATCAGGTTAATAAGCGACTGGAAAAGTCCATCTTT GACTGCAACAACATCGGCGACTTTTACGACTGCGGGTGCGGAGACGATAAAAAGGACGGAAAGAAAAAGGACGAG GGGGTGAAGTAA |
| Gene | >Ophcf2|06383 ATGGCGCGTCGGACGCACGTCACCTTGATGCTCCTCGTCGGCCTCGCCTTCTTCTTCAGCGTCTCCTATCTTTAC TCCGGGCCGGGCTCCTTGACGGCACGGGATGCCGCTCGACTGCTGAACAAGGTCCGCAACGGGCCGTCCCAGACC CGCCCCTCCGAGTCCGAGGCCGGGCCGGGTTTCCGACCGGACCTGGGCGGTCTCCCCGATGGCCTGCTGGACGGT GAATCCATCGCGCCCAAGCTGGAAAATGCAACCTTGAAGTGAAGACCGTTGCCCCCGCTTGCCTTGTCGTCTCGG TCCATTCTTGCTGACCCTGATCCGACAGAGCCGAACTGGGTCGCGCCACATGGAAGTTCCTACACACCATGGTGG CCAAGTACCCCGAGAAGCCGACGCCGGAAGATCGCAAGACGCTGCAGCTCTTTTTCATGGCCTTTGGCAAGCTGT ACCCCTGCGGCGACTGCGCGAGACACTTCCGCGGCCTTCTCAAGCAGATGCCGCCCCAGACGGGCAGCCGCAACT CGGCGGCTGGATGGCTATGCGAGATGCACAATCAGGTTAATAAGCGACTGGAAAAGTCCATCTTTGACTGCAACA ACATCGGCGACTTTTACGACTGCGGGTGCGGAGACGATAAAAAGGACGGAAAGAAAAAGGACGAGGGGGTGAAGT AA |