© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06312 |
| Gene name | |
| Location | scaffold_07:1918563..1919966 |
| Strand | + |
| Gene length (bp) | 1403 |
| Transcript length (bp) | 1299 |
| Coding sequence length (bp) | 1299 |
| Protein length (aa) | 433 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 6.5E-34 | 34 | 190 |
| PF11970 | GPR_Gpa2_C | G protein-coupled glucose receptor regulating Gpa2 C-term | 3.6E-17 | 281 | 351 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 33 | 18 |
| 2 | 40 | 62 | 22 |
| 3 | 77 | 99 | 22 |
| 4 | 120 | 142 | 22 |
| 5 | 162 | 184 | 22 |
| 6 | 292 | 314 | 22 |
| 7 | 324 | 346 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 10.55 | 4.14 | 16.96 |
| Alive | In ants, during behavior modification | 13.53 | 5.54 | 21.51 |
| Dead | In ants, recently dead | 11.32 | 4.49 | 18.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.366023 | no |
| Alive | Dead | 0.465975 | no |
| Dead | Fungus | 0.833105 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06312 MPLSSPAPLTISPQGHKLAINVTCLVLASLSVVATAWAKILIVILLQIDLFKSAILVLVPAIELVHGPVISGSTT CHVIGCVLLITLEACNVAIVLLALHTALNVFRGEGGLYPHRRLAWAVGLVLPLALASLAFINRPAFVNTDGFCQV PERPRWPKRVLIWLPRGLCLVIIVFTYVATFVHVQKLMRRFVAGPAQPGPRIKAVEPPPPPSLASLRLGPWQPDV IPFRDSGIRPVLTLASVSGPPCPVVSGSHPSLLIRPDSSTAVTLSPTTFGASGIAETRDRVRRQLRLLFIYPMVY MGLWTVPLICHITSVLDRGETVGLSLASIASLSLQGVADALVFLVVEKPWRLPRHGDASCWLVHAIQGTAVTTTT NAGRSRDEMRFDSRVARRRREGERAAERRSKHSPGRVREWWEVGVETDVEDDGYSDT* |
| Coding | >Ophcf2|06312 ATGCCCCTTTCAAGCCCCGCCCCCCTGACCATCAGCCCACAAGGCCACAAGCTGGCCATCAACGTGACTTGCCTC GTCCTCGCAAGCCTAAGTGTCGTGGCCACGGCTTGGGCCAAGATCCTCATCGTGATCCTCCTCCAAATCGACCTC TTCAAATCAGCCATCCTCGTCCTCGTCCCCGCCATAGAACTCGTCCACGGTCCCGTCATCTCAGGCTCGACAACA TGTCACGTCATCGGTTGCGTCCTTCTCATCACTCTGGAAGCCTGCAACGTCGCCATCGTCCTCCTCGCTCTGCAC ACGGCCCTCAACGTATTCCGAGGCGAAGGGGGACTGTACCCGCATCGACGTCTGGCTTGGGCTGTCGGCCTCGTG CTACCTCTGGCTCTCGCTTCGCTTGCCTTCATCAATAGGCCTGCTTTTGTCAATACCGATGGCTTCTGTCAAGTT CCTGAGAGGCCGAGGTGGCCGAAGCGGGTGCTAATATGGCTCCCTCGCGGCCTGTGTCTCGTCATCATCGTCTTC ACTTACGTTGCCACCTTTGTACACGTTCAGAAGCTCATGAGACGCTTCGTCGCTGGGCCTGCACAGCCGGGACCT AGGATCAAGGCAGTCGAACCGCCCCCGCCGCCTTCGCTGGCCTCGCTCCGTCTCGGTCCGTGGCAGCCGGACGTG ATCCCGTTCCGGGACTCGGGCATCCGGCCTGTGCTGACGCTGGCTTCTGTATCGGGACCGCCTTGTCCGGTCGTA TCTGGCTCTCATCCGTCGTTGCTGATCCGACCAGACTCGTCGACAGCCGTCACGCTCTCCCCAACGACATTCGGA GCCTCAGGAATAGCCGAGACGCGAGACAGGGTCCGCCGCCAGCTTCGTCTGCTCTTCATCTACCCCATGGTTTAC ATGGGCTTGTGGACCGTCCCCCTGATCTGCCACATCACGAGCGTCCTCGACCGCGGCGAAACCGTCGGCCTCAGC CTAGCCAGCATCGCCAGTCTCAGCCTGCAGGGAGTCGCCGACGCTCTCGTGTTCCTCGTCGTGGAGAAGCCGTGG CGTCTGCCGCGGCATGGCGACGCCTCTTGCTGGCTCGTTCACGCCATACAGGGCACCGCGGTGACGACCACCACC AACGCTGGCCGCAGTCGCGACGAGATGCGCTTCGACAGCCGCGTCGCGAGACGTCGTCGAGAAGGAGAGCGCGCT GCCGAGCGTCGTTCCAAGCACAGCCCCGGCCGCGTGCGCGAGTGGTGGGAGGTTGGTGTCGAGACTGATGTGGAA GACGACGGCTACAGCGACACGTGA |
| Transcript | >Ophcf2|06312 ATGCCCCTTTCAAGCCCCGCCCCCCTGACCATCAGCCCACAAGGCCACAAGCTGGCCATCAACGTGACTTGCCTC GTCCTCGCAAGCCTAAGTGTCGTGGCCACGGCTTGGGCCAAGATCCTCATCGTGATCCTCCTCCAAATCGACCTC TTCAAATCAGCCATCCTCGTCCTCGTCCCCGCCATAGAACTCGTCCACGGTCCCGTCATCTCAGGCTCGACAACA TGTCACGTCATCGGTTGCGTCCTTCTCATCACTCTGGAAGCCTGCAACGTCGCCATCGTCCTCCTCGCTCTGCAC ACGGCCCTCAACGTATTCCGAGGCGAAGGGGGACTGTACCCGCATCGACGTCTGGCTTGGGCTGTCGGCCTCGTG CTACCTCTGGCTCTCGCTTCGCTTGCCTTCATCAATAGGCCTGCTTTTGTCAATACCGATGGCTTCTGTCAAGTT CCTGAGAGGCCGAGGTGGCCGAAGCGGGTGCTAATATGGCTCCCTCGCGGCCTGTGTCTCGTCATCATCGTCTTC ACTTACGTTGCCACCTTTGTACACGTTCAGAAGCTCATGAGACGCTTCGTCGCTGGGCCTGCACAGCCGGGACCT AGGATCAAGGCAGTCGAACCGCCCCCGCCGCCTTCGCTGGCCTCGCTCCGTCTCGGTCCGTGGCAGCCGGACGTG ATCCCGTTCCGGGACTCGGGCATCCGGCCTGTGCTGACGCTGGCTTCTGTATCGGGACCGCCTTGTCCGGTCGTA TCTGGCTCTCATCCGTCGTTGCTGATCCGACCAGACTCGTCGACAGCCGTCACGCTCTCCCCAACGACATTCGGA GCCTCAGGAATAGCCGAGACGCGAGACAGGGTCCGCCGCCAGCTTCGTCTGCTCTTCATCTACCCCATGGTTTAC ATGGGCTTGTGGACCGTCCCCCTGATCTGCCACATCACGAGCGTCCTCGACCGCGGCGAAACCGTCGGCCTCAGC CTAGCCAGCATCGCCAGTCTCAGCCTGCAGGGAGTCGCCGACGCTCTCGTGTTCCTCGTCGTGGAGAAGCCGTGG CGTCTGCCGCGGCATGGCGACGCCTCTTGCTGGCTCGTTCACGCCATACAGGGCACCGCGGTGACGACCACCACC AACGCTGGCCGCAGTCGCGACGAGATGCGCTTCGACAGCCGCGTCGCGAGACGTCGTCGAGAAGGAGAGCGCGCT GCCGAGCGTCGTTCCAAGCACAGCCCCGGCCGCGTGCGCGAGTGGTGGGAGGTTGGTGTCGAGACTGATGTGGAA GACGACGGCTACAGCGACACGTGA |
| Gene | >Ophcf2|06312 ATGCCCCTTTCAAGCCCCGCCCCCCTGACCATCAGCCCACAAGGCCACAAGCTGGCCATCAACGTGACTTGCCTC GTCCTCGCAAGCCTAAGTGTCGTGGCCACGGCTTGGGCCAAGATGTGCTTCCTTCGCGTACGGAAGAACTTTCGC TACGAGCGCGTTTTCACCCCCCCCCTTTCCTACTCTACATGAAAACTTGATCCATCAGCTAAGAGAGAAACAGCC TCATCGTGATCCTCCTCCAAATCGACCTCTTCAAATCAGCCATCCTCGTCCTCGTCCCCGCCATAGAACTCGTCC ACGGTCCCGTCATCTCAGGCTCGACAACATGTCACGTCATCGGTTGCGTCCTTCTCATCACTCTGGAAGCCTGCA ACGTCGCCATCGTCCTCCTCGCTCTGCACACGGCCCTCAACGTATTCCGAGGCGAAGGGGGACTGTACCCGCATC GACGTCTGGCTTGGGCTGTCGGCCTCGTGCTACCTCTGGCTCTCGCTTCGCTTGCCTTCATCAATAGGCCTGCTT TTGTCAATACCGATGGCTTCTGTCAAGTTCCTGAGAGGCCGAGGTGGCCGAAGCGGGTGCTAATATGGCTCCCTC GCGGCCTGTGTCTCGTCATCATCGTCTTCACTTACGTTGCCACCTTTGTACACGTTCAGAAGCTCATGAGACGCT TCGTCGCTGGGCCTGCACAGCCGGGACCTAGGATCAAGGCAGTCGAACCGCCCCCGCCGCCTTCGCTGGCCTCGC TCCGTCTCGGTCCGTGGCAGCCGGACGTGATCCCGTTCCGGGACTCGGGCATCCGGCCTGTGCTGACGCTGGCTT CTGTATCGGGACCGCCTTGTCCGGTCGTATCTGGCTCTCATCCGTCGTTGCTGATCCGACCAGACTCGTCGACAG CCGTCACGCTCTCCCCAACGACATTCGGAGCCTCAGGAATAGCCGAGACGCGAGACAGGGTCCGCCGCCAGCTTC GTCTGCTCTTCATCTACCCCATGGTTTACATGGGCTTGTGGACCGTCCCCCTGATCTGCCACATCACGAGCGTCC TCGACCGCGGCGAAACCGTCGGCCTCAGCCTAGCCAGCATCGCCAGTCTCAGCCTGCAGGGAGTCGCCGACGCTC TCGTGTTCCTCGTCGTGGAGAAGCCGTGGCGTCTGCCGCGGCATGGCGACGCCTCTTGCTGGCTCGTTCACGCCA TACAGGGCACCGCGGTGACGACCACCACCAACGCTGGCCGCAGTCGCGACGAGATGCGCTTCGACAGCCGCGTCG CGAGACGTCGTCGAGAAGGAGAGCGCGCTGCCGAGCGTCGTTCCAAGCACAGCCCCGGCCGCGTGCGCGAGTGGT GGGAGGTTGGTGTCGAGACTGATGTGGAAGACGACGGCTACAGCGACACGTGA |