Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06303
Gene name
Locationscaffold_07:1840667..1841196
Strand+
Gene length (bp)529
Transcript length (bp)441
Coding sequence length (bp)441
Protein length (aa) 147

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01679 Pmp3 Proteolipid membrane potential modulator 1.2E-20 5 53

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 5 22 17
2 31 53 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06303
MCSSDVFLGLLAILFPPLAVWVKRGICSADSLINILLCVLGFIPGLLHAWYIIAKFPDHEWEGPAHEHEAGRVAY
VYVQPSDSCRQPRPHGGMDYGTQGSSRTQRQAEERGVVAAGSGSNHAGNSRGVPPSYAEVVAGDHKVQTNE*
Coding >Ophcf2|06303
ATGTGCTCTTCCGATGTCTTCCTGGGCCTCCTTGCCATTCTCTTCCCCCCGCTTGCCGTGTGGGTGAAGCGCGGA
ATCTGCAGCGCAGACAGCCTAATCAACATCCTGCTCTGCGTCCTCGGCTTCATCCCCGGCCTGCTTCACGCCTGG
TACATCATCGCCAAGTTCCCGGATCACGAGTGGGAGGGCCCGGCGCATGAGCATGAGGCCGGTCGTGTGGCCTAC
GTCTATGTCCAGCCGTCGGATAGCTGTCGCCAACCTCGTCCGCACGGCGGTATGGATTACGGAACGCAGGGTTCG
TCGCGGACGCAGCGGCAGGCGGAGGAGCGGGGGGTCGTTGCGGCGGGCTCTGGCAGCAATCATGCTGGTAATTCT
CGGGGTGTGCCGCCTTCTTATGCCGAGGTCGTTGCTGGCGATCACAAGGTGCAGACCAATGAGTAG
Transcript >Ophcf2|06303
ATGTGCTCTTCCGATGTCTTCCTGGGCCTCCTTGCCATTCTCTTCCCCCCGCTTGCCGTGTGGGTGAAGCGCGGA
ATCTGCAGCGCAGACAGCCTAATCAACATCCTGCTCTGCGTCCTCGGCTTCATCCCCGGCCTGCTTCACGCCTGG
TACATCATCGCCAAGTTCCCGGATCACGAGTGGGAGGGCCCGGCGCATGAGCATGAGGCCGGTCGTGTGGCCTAC
GTCTATGTCCAGCCGTCGGATAGCTGTCGCCAACCTCGTCCGCACGGCGGTATGGATTACGGAACGCAGGGTTCG
TCGCGGACGCAGCGGCAGGCGGAGGAGCGGGGGGTCGTTGCGGCGGGCTCTGGCAGCAATCATGCTGGTAATTCT
CGGGGTGTGCCGCCTTCTTATGCCGAGGTCGTTGCTGGCGATCACAAGGTGCAGACCAATGAGTAG
Gene >Ophcf2|06303
ATGTGCTCTTCCGATGTCTTCCTGGGCCTCCTTGCCATTCTCTTCCCCCCGCTTGCCGGTACGTCGTGCCACCGT
TACCGCCTTACCCCCCCCCCCCCCCTCTCCATGTATGTAGGTAGGCGTCGCTGACGGCCCGCCTCGTTCAGTGTG
GGTGAAGCGCGGAATCTGCAGCGCAGACAGCCTAATCAACATCCTGCTCTGCGTCCTCGGCTTCATCCCCGGCCT
GCTTCACGCCTGGTACATCATCGCCAAGTTCCCGGATCACGAGTGGGAGGGCCCGGCGCATGAGCATGAGGCCGG
TCGTGTGGCCTACGTCTATGTCCAGCCGTCGGATAGCTGTCGCCAACCTCGTCCGCACGGCGGTATGGATTACGG
AACGCAGGGTTCGTCGCGGACGCAGCGGCAGGCGGAGGAGCGGGGGGTCGTTGCGGCGGGCTCTGGCAGCAATCA
TGCTGGTAATTCTCGGGGTGTGCCGCCTTCTTATGCCGAGGTCGTTGCTGGCGATCACAAGGTGCAGACCAATGA
GTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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