© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|06284 |
| Gene name | |
| Location | scaffold_07:1783448..1784995 |
| Strand | + |
| Gene length (bp) | 1547 |
| Transcript length (bp) | 1137 |
| Coding sequence length (bp) | 1137 |
| Protein length (aa) | 379 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00782 | DSPc | Dual specificity phosphatase, catalytic domain | 4.8E-09 | 185 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016311 | dephosphorylation | Yes |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | Yes |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0016791 | phosphatase activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0016787 | hydrolase activity | No |
| GO:0004721 | phosphoprotein phosphatase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 204 | 226 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 51.14 | 28.15 | 74.14 |
| Alive | In ants, during behavior modification | 95.90 | 54.74 | 137.07 |
| Dead | In ants, recently dead | 71.94 | 40.72 | 103.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000454 | yes |
| Alive | Dead | 0.075776 | no |
| Dead | Fungus | 0.071192 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06284 MDVDLAMDDGEGECCAGPPPDAIRMAPYSLRAPSPPVLHVPVVQFRPDEPSEMRFTPSAERVDPTQLTDEDLFII TGGKTHVAVDRVFSWRYEDRRRAQHILDFLVLGPTSVVRDDEFLRREAVTMMLVARDARMGDTRLVSVDVAASRH GIVRLFVDVEYPSGVINAWSHAVRLINDHLVSYHRARGRRGKVLVMCESGNDRSAAIVVAYLMALFGVGVVPAIQ FTSVQRFCCCFEEDVKRLLVAWGDILRARRAVAGQTFPRDAWQQQQQQQQLLSPQMQGQDGSWPAPSPLPPTEVA VLPEAKAKRGLDDGMEDVCIVLVGERDGWCFKQRIAATFAIQWRNLAIVLGKIEENFSLLSLSGRTDVRLDWIEA CVS* |
| Coding | >Ophcf2|06284 ATGGACGTCGACTTGGCAATGGACGACGGCGAAGGGGAATGCTGCGCCGGTCCACCGCCGGACGCGATCCGTATG GCGCCCTACTCGCTTCGCGCCCCCAGTCCGCCGGTCTTACACGTGCCGGTGGTGCAATTCAGGCCAGACGAGCCT TCTGAGATGCGGTTCACGCCGTCGGCTGAGCGGGTTGATCCGACGCAGCTGACGGATGAAGACTTATTCATCATC ACGGGGGGGAAGACGCACGTTGCCGTGGATCGCGTCTTCTCGTGGCGGTACGAGGATAGGCGTAGGGCTCAGCAT ATACTCGACTTTCTCGTCCTCGGTCCTACGAGTGTTGTGCGCGATGACGAGTTCCTAAGGCGGGAGGCCGTTACC ATGATGCTTGTTGCTCGTGATGCTCGCATGGGGGATACGAGACTTGTCAGCGTCGACGTGGCGGCCTCACGGCAT GGCATCGTCAGACTCTTCGTTGACGTCGAGTACCCGTCTGGCGTCATCAACGCCTGGTCACATGCCGTCCGGCTC ATCAACGACCACCTCGTCAGCTACCACCGCGCCCGCGGTCGACGCGGAAAGGTGCTCGTCATGTGCGAGTCCGGC AATGACCGATCAGCAGCCATAGTGGTCGCCTACCTCATGGCTCTATTTGGCGTGGGAGTCGTGCCGGCGATACAG TTCACCAGCGTGCAGCGTTTCTGCTGCTGCTTCGAGGAGGATGTCAAGAGGCTGCTGGTTGCGTGGGGGGATATC CTGAGGGCTCGGCGGGCGGTGGCTGGTCAGACTTTCCCTCGTGACGCGTGGCAGCAGCAGCAGCAGCAGCAGCAG CTTTTATCGCCGCAGATGCAGGGACAGGATGGGTCTTGGCCTGCTCCTTCGCCGTTGCCGCCGACGGAGGTTGCT GTTCTTCCCGAGGCCAAGGCTAAGCGTGGGCTGGATGATGGCATGGAGGACGTCTGCATCGTCTTGGTTGGTGAG CGAGATGGCTGGTGTTTCAAGCAGCGTATTGCTGCGACCTTTGCAATCCAATGGAGGAATCTTGCTATTGTCCTC GGCAAAATAGAGGAGAATTTTTCACTATTGTCTCTCTCTGGCCGCACTGACGTTAGACTCGACTGGATCGAGGCG TGCGTCAGTTGA |
| Transcript | >Ophcf2|06284 ATGGACGTCGACTTGGCAATGGACGACGGCGAAGGGGAATGCTGCGCCGGTCCACCGCCGGACGCGATCCGTATG GCGCCCTACTCGCTTCGCGCCCCCAGTCCGCCGGTCTTACACGTGCCGGTGGTGCAATTCAGGCCAGACGAGCCT TCTGAGATGCGGTTCACGCCGTCGGCTGAGCGGGTTGATCCGACGCAGCTGACGGATGAAGACTTATTCATCATC ACGGGGGGGAAGACGCACGTTGCCGTGGATCGCGTCTTCTCGTGGCGGTACGAGGATAGGCGTAGGGCTCAGCAT ATACTCGACTTTCTCGTCCTCGGTCCTACGAGTGTTGTGCGCGATGACGAGTTCCTAAGGCGGGAGGCCGTTACC ATGATGCTTGTTGCTCGTGATGCTCGCATGGGGGATACGAGACTTGTCAGCGTCGACGTGGCGGCCTCACGGCAT GGCATCGTCAGACTCTTCGTTGACGTCGAGTACCCGTCTGGCGTCATCAACGCCTGGTCACATGCCGTCCGGCTC ATCAACGACCACCTCGTCAGCTACCACCGCGCCCGCGGTCGACGCGGAAAGGTGCTCGTCATGTGCGAGTCCGGC AATGACCGATCAGCAGCCATAGTGGTCGCCTACCTCATGGCTCTATTTGGCGTGGGAGTCGTGCCGGCGATACAG TTCACCAGCGTGCAGCGTTTCTGCTGCTGCTTCGAGGAGGATGTCAAGAGGCTGCTGGTTGCGTGGGGGGATATC CTGAGGGCTCGGCGGGCGGTGGCTGGTCAGACTTTCCCTCGTGACGCGTGGCAGCAGCAGCAGCAGCAGCAGCAG CTTTTATCGCCGCAGATGCAGGGACAGGATGGGTCTTGGCCTGCTCCTTCGCCGTTGCCGCCGACGGAGGTTGCT GTTCTTCCCGAGGCCAAGGCTAAGCGTGGGCTGGATGATGGCATGGAGGACGTCTGCATCGTCTTGGTTGGTGAG CGAGATGGCTGGTGTTTCAAGCAGCGTATTGCTGCGACCTTTGCAATCCAATGGAGGAATCTTGCTATTGTCCTC GGCAAAATAGAGGAGAATTTTTCACTATTGTCTCTCTCTGGCCGCACTGACGTTAGACTCGACTGGATCGAGGCG TGCGTCAGTTGA |
| Gene | >Ophcf2|06284 ATGGACGTCGACTTGGCAATGGACGACGGCGAAGGGGAATGCTGCGCCGGTCCACCGCCGGACGCGATCCGTATG GCGCCCTACTCGCTTCGCGCCCCCAGTCCGCCGGTCTTACACGTGCCGGTGGTGCAATTCAGGCCAGACGAGCCT TCTGAGATGCGGTTCACGCCGTCGGCTGAGCGGGTTGATCCGACGCAGCTGACGGATGAAGACTTATTCATCATC ACGGGGGGGAAGACGCACGTTGCCGTGGATCGCGTCTTCTCGTGGCGGTACGAGGATAGGCGTAGGGCTCAGCAT ATACTCGACTTTCTCGTCCTCGGTCCTACGAGTGTTGTGCGCGATGACGAGTTCCTAAGGCGGGAGGCCGTTACC ATGATGCTTGTTGCTCGTGATGCTCGCATGGGGGATACGAGACTTGTCAGCGTCGACGTGGCGGCCTCACGGCAT GGCATCGTCAGACTCTTCGTTGACGTCGAGTACCCGTCTGGCGTCATCAACGCCTGGTCACATGCCGTCCGGCTC ATCAACGACCACCTCGTCAGCTACCACCGCGCCCGCGGTCGACGCGGAAAGGTGCTCGTCATGTGCGAGTCCGGC AATGACCGATCAGCAGCCATAGTGGTCGCCTACCTCATGGCTCTATTTGGCGTGGGAGTCGTGCCGGCGATACAG TTCACCAGCGTGCAGCGTTTCTGCTGCTGCTTCGAGGAGGATGTCAAGAGGCTGCTGGTTGCGTGGGGGGATATC CTGAGGGCTCGGCGGGCGGTGGCTGGTCAGACTTTCCCTCGTGACGCGTGGCAGCAGCAGCAGCAGCAGCAGCAG CTTTTATCGCCGCAGATGCAGGGACAGGATGGGTCTTGGCCTGCTCCTTCGCCGTTGCCGCCGACGGAGGTTGCT GTTCTTCCCGAGGCCAAGGCTAAGCGTGGGCTGGATGATGGCATGGAGGACGGTGAGCGCTTCGTTGGGCGCGGA TACTCGGCTCCTTTTGGTGACGTGTGTTGAATGTGAGGGGCGACGAGATGAAGGGGAGGTGGAGGGAGTCGGGAG ATGCAGGTGAGTTTTGGTTCAAGGCAAAGCTTGAATCAGCAACTTGAATGGGCGCAGTCTGCATCGTCTTGGTTG GTGAGCGAGATGGCTGGTGTTTCAAGGTAGGATCGGGACCCGCGAAGAAGCAGGTGAAGATGGCTTCATTGACTC GAGTTATCTTGCTAGGTAGGTACTTGCGAGTATTCCATCAGCCATCTGTACTGCCATTGACTTGCTTGACTGGAT GGAAGCAGCGTATTGCTGCGACCTTTGCAATGTGAGGCTTCAGTGCAGCGTGGGCTGTGATTGGCTGCCCACCGA GGACACCAATCGAAGCCAATGGAGGAATCTTGCTATTGTCCTCGGCAAAATAGAGGAGAATTTTTCACTATTGTC TCTCTCTGGCCGCACTGGTATAAATTTCTCTCTTCCCCCTCTTTCCTTTCGTCTCGTCTCTTCTTCTGACGTTGA GAACATCAGACGTTAGACTCGACTGGATCGAGGCGTGCGTCAGTTGA |