Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|06282
Gene name
Locationscaffold_07:1779194..1779971
Strand-
Gene length (bp)777
Transcript length (bp)714
Coding sequence length (bp)714
Protein length (aa) 238

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00957 Synaptobrevin Synaptobrevin 1.2E-30 148 231
PF13774 Longin Regulated-SNARE-like domain 1.1E-28 38 130

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 33 0.45

Transmembrane Domains

Domain # Start End Length
1 214 233 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|06282
MASSSTPSTPLLYSCIAHKTTILSECTTSASSQASSLASLILPKIEHATPQKLTYTHGQHQVHYMSEAPSEYPSH
PAAGGLTFLVVADASLGRRVPFGFLLEIRRRFLDAFPVAETDFSDLPNYGAGSFNADLKGLMVEYGSTAGGRDDA
IGNAKREIDDVRGIMTRNIESLLERGERVDLLVDKTDRLGGSSREFRVRSRGLKREMWWKNVKLMALIAFVILLI
IIAIVIGVKNGS*
Coding >Ophcf2|06282
ATGGCGTCGTCATCCACGCCCTCCACTCCTCTCTTATACTCCTGCATCGCCCACAAGACAACTATTCTTTCGGAA
TGCACCACATCAGCCTCTTCGCAAGCCTCGTCGCTCGCGTCGCTCATCCTACCCAAGATTGAGCACGCGACGCCG
CAGAAGCTGACGTACACCCACGGCCAGCACCAAGTCCACTACATGTCCGAGGCTCCATCCGAGTATCCATCTCAC
CCAGCCGCAGGCGGTCTAACGTTCCTCGTCGTCGCCGATGCCTCGCTCGGCCGCCGCGTGCCCTTTGGCTTCCTT
CTCGAGATCCGCCGGCGCTTCCTCGACGCCTTTCCCGTCGCAGAAACCGACTTTTCCGATCTTCCAAACTACGGT
GCCGGTTCCTTCAACGCCGACCTCAAGGGCCTGATGGTTGAATACGGCTCTACGGCAGGTGGGCGCGACGACGCC
ATCGGAAATGCCAAGCGCGAGATCGACGACGTCAGGGGCATCATGACGCGAAACATCGAGTCGTTACTCGAGCGG
GGTGAGAGGGTCGATCTCCTAGTCGACAAGACCGACAGACTCGGTGGCAGCTCCCGCGAGTTCCGCGTCAGGAGC
CGCGGCCTGAAGCGCGAGATGTGGTGGAAGAATGTGAAGCTGATGGCGCTCATTGCCTTCGTCATACTGCTCATC
ATCATCGCCATTGTTATTGGGGTCAAGAATGGATCGTGA
Transcript >Ophcf2|06282
ATGGCGTCGTCATCCACGCCCTCCACTCCTCTCTTATACTCCTGCATCGCCCACAAGACAACTATTCTTTCGGAA
TGCACCACATCAGCCTCTTCGCAAGCCTCGTCGCTCGCGTCGCTCATCCTACCCAAGATTGAGCACGCGACGCCG
CAGAAGCTGACGTACACCCACGGCCAGCACCAAGTCCACTACATGTCCGAGGCTCCATCCGAGTATCCATCTCAC
CCAGCCGCAGGCGGTCTAACGTTCCTCGTCGTCGCCGATGCCTCGCTCGGCCGCCGCGTGCCCTTTGGCTTCCTT
CTCGAGATCCGCCGGCGCTTCCTCGACGCCTTTCCCGTCGCAGAAACCGACTTTTCCGATCTTCCAAACTACGGT
GCCGGTTCCTTCAACGCCGACCTCAAGGGCCTGATGGTTGAATACGGCTCTACGGCAGGTGGGCGCGACGACGCC
ATCGGAAATGCCAAGCGCGAGATCGACGACGTCAGGGGCATCATGACGCGAAACATCGAGTCGTTACTCGAGCGG
GGTGAGAGGGTCGATCTCCTAGTCGACAAGACCGACAGACTCGGTGGCAGCTCCCGCGAGTTCCGCGTCAGGAGC
CGCGGCCTGAAGCGCGAGATGTGGTGGAAGAATGTGAAGCTGATGGCGCTCATTGCCTTCGTCATACTGCTCATC
ATCATCGCCATTGTTATTGGGGTCAAGAATGGATCGTGA
Gene >Ophcf2|06282
ATGGCGTCGTCATCCACGCCCTCCACTCCTCTCTTATAGTATGAACCCCCTATCCATCTCTAGGATTCATCACTG
ATGATTCGCTTCGCCTTCCTCAACAGCTCCTGCATCGCCCACAAGACAACTATTCTTTCGGAATGCACCACATCA
GCCTCTTCGCAAGCCTCGTCGCTCGCGTCGCTCATCCTACCCAAGATTGAGCACGCGACGCCGCAGAAGCTGACG
TACACCCACGGCCAGCACCAAGTCCACTACATGTCCGAGGCTCCATCCGAGTATCCATCTCACCCAGCCGCAGGC
GGTCTAACGTTCCTCGTCGTCGCCGATGCCTCGCTCGGCCGCCGCGTGCCCTTTGGCTTCCTTCTCGAGATCCGC
CGGCGCTTCCTCGACGCCTTTCCCGTCGCAGAAACCGACTTTTCCGATCTTCCAAACTACGGTGCCGGTTCCTTC
AACGCCGACCTCAAGGGCCTGATGGTTGAATACGGCTCTACGGCAGGTGGGCGCGACGACGCCATCGGAAATGCC
AAGCGCGAGATCGACGACGTCAGGGGCATCATGACGCGAAACATCGAGTCGTTACTCGAGCGGGGTGAGAGGGTC
GATCTCCTAGTCGACAAGACCGACAGACTCGGTGGCAGCTCCCGCGAGTTCCGCGTCAGGAGCCGCGGCCTGAAG
CGCGAGATGTGGTGGAAGAATGTGAAGCTGATGGCGCTCATTGCCTTCGTCATACTGCTCATCATCATCGCCATT
GTTATTGGGGTCAAGAATGGATCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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