© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06257 |
| Gene name | |
| Location | scaffold_07:1705086..1707958 |
| Strand | - |
| Gene length (bp) | 2872 |
| Transcript length (bp) | 2817 |
| Coding sequence length (bp) | 2817 |
| Protein length (aa) | 939 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06011 | TRP | Transient receptor potential (TRP) ion channel | 3.4E-106 | 202 | 714 |
| PF14558 | TRP_N | ML-like domain | 2.1E-38 | 57 | 196 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 126 | 148 | 22 |
| 3 | 205 | 227 | 22 |
| 4 | 234 | 256 | 22 |
| 5 | 386 | 408 | 22 |
| 6 | 429 | 451 | 22 |
| 7 | 466 | 488 | 22 |
| 8 | 579 | 598 | 19 |
| 9 | 603 | 622 | 19 |
| 10 | 634 | 655 | 21 |
| 11 | 670 | 692 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 30.67 | 17.55 | 43.79 |
| Alive | In ants, during behavior modification | 120.76 | 57.49 | 184.04 |
| Dead | In ants, recently dead | 114.12 | 58.15 | 170.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.811119 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06257 MAPRRDSRPWCLVMAFLVTTFFACPAFVLAANDRVYIKGDGIDGVSRQLDVARYPALYTGDFDDCLGDESLFNIT KFDAAYYADNLTVLFHLDGTSNIRRENLILHISVEAYGENRFNMTYDPCKANIASMCPLNASVPVSAFATIPISP NDVAGIPSIALGIPDLEGFARLQIFANSTKTEIGCFQAVMTNGNSFSQPRAVASILGILTALAALASFATAAYGL SVPHMRTHYAHSFSVLIIFETFQSIFFSGALSVNWPSVLPAWWSNFAWSAGIFADRSVHKSLRAFTGTNTDATHV GGAGSFQINNSGGLLRKIYGRALSGGSPKVYKALTRRAAYNASNPYDYNWNGYPRAPGMPMPGTWPGFAGTLSAV GVPPAEVFMVALIWLLVVLVAIVAFVVAAKLILDLLRRRKYVKSDGFDYFRSHLGGYVLAALFRTLFIAFFAIMT LATYQFSLRGRAGPTAMAAVVWIVFLLAVGGASALACHARFSQGKFSVVRDTVRIERGTLFGKMPFIAASRSSQL GEEERSEKRYLLWTIPFLRVKFTDDDANRATVHRDEAFIKRFGWLTGRYRRTKWWFFSVYVVYLFVRASFVGGGS RSPLAQVFGLFIFELLALLAIVKTSPFEGNRNTALSIWMLSISKIVTCGLSIAFLPDFSLNRIVATVLGIIIIVV QGFVAVAVVVLIGLGAVSTCMSLSRNREQFPASMDQTRIRYFVHVDARAPDSPPRPRTKMPASGVTVQATTFDVK GVRRTPKTDDVEGAPSASASLRRSRANSAGSLPRTGRSHRKSWSSKDLAQWDAEMNRGDIQRSNFSTRSGSSLRL HGLGAGETHAASGSPARRPPPMTPMLESVESPGWGNLPAQPFAEEKTATRGPDTISDDGVSAVARPVVDEKEGSP HVSAAEPMPRSPENTTSGDGNAVGAISTDEKMTPRENR* |
| Coding | >Ophcf2|06257 ATGGCGCCTCGCCGTGACTCCAGGCCATGGTGCCTCGTCATGGCCTTCCTCGTCACGACATTCTTCGCCTGCCCC GCCTTTGTCTTGGCCGCTAATGACAGGGTTTACATCAAGGGCGATGGCATCGACGGTGTCTCACGACAACTCGAC GTCGCCCGTTACCCAGCTCTCTACACGGGTGACTTTGACGACTGCCTTGGTGACGAGAGTCTCTTCAACATCACC AAGTTCGACGCTGCCTATTATGCCGATAACCTCACAGTCCTCTTCCACCTCGACGGCACGTCCAATATCCGGCGT GAGAACCTTATACTGCACATCTCCGTTGAGGCCTATGGAGAGAACCGCTTCAACATGACGTACGACCCGTGCAAG GCCAACATCGCCAGCATGTGTCCTCTCAACGCCAGCGTCCCGGTATCGGCCTTTGCCACAATTCCCATCTCCCCC AACGACGTCGCCGGTATTCCCTCCATCGCCCTGGGCATCCCCGACCTCGAGGGTTTCGCCCGTCTGCAGATCTTT GCCAACTCGACCAAAACCGAGATTGGCTGCTTCCAGGCCGTCATGACCAACGGAAACTCCTTCTCTCAGCCCAGG GCCGTCGCCTCTATCCTCGGCATCTTGACCGCCTTGGCCGCCTTGGCATCCTTTGCTACGGCAGCCTACGGGCTC AGCGTCCCTCATATGCGCACGCACTACGCCCACTCGTTTTCCGTCCTCATCATCTTCGAGACCTTTCAGTCCATC TTCTTCTCGGGCGCCCTCTCCGTCAACTGGCCGAGCGTGCTGCCCGCCTGGTGGAGCAACTTTGCCTGGTCCGCT GGTATCTTTGCGGACCGTTCCGTTCACAAGTCGCTGAGAGCCTTCACCGGTACCAACACCGATGCCACCCACGTC GGCGGCGCGGGCTCCTTTCAGATCAACAACAGCGGCGGCCTGCTGCGCAAAATCTACGGCAGAGCCCTGTCCGGC GGCTCGCCCAAAGTCTACAAAGCGTTGACTCGCCGGGCTGCGTACAACGCGAGCAACCCCTATGACTACAACTGG AACGGCTATCCTCGCGCCCCGGGAATGCCCATGCCCGGCACCTGGCCCGGCTTTGCTGGGACGCTGTCTGCCGTC GGCGTGCCCCCGGCCGAGGTCTTTATGGTGGCCCTGATCTGGCTGCTCGTCGTCTTGGTCGCCATCGTCGCCTTC GTTGTGGCCGCCAAGCTGATACTCGACCTGTTGAGGAGACGCAAGTACGTCAAGTCAGACGGCTTCGACTACTTT CGCTCCCATCTGGGCGGCTACGTGCTTGCGGCGCTCTTCCGCACTCTCTTCATCGCCTTCTTCGCCATCATGACC CTGGCCACGTACCAGTTCTCGCTACGCGGTCGGGCTGGGCCAACCGCCATGGCTGCCGTCGTCTGGATCGTCTTT CTGCTGGCTGTCGGCGGAGCATCGGCGCTTGCTTGCCATGCCAGATTCAGCCAGGGGAAATTCTCAGTCGTCCGG GATACGGTGCGCATCGAGCGCGGAACTCTCTTCGGCAAGATGCCATTCATAGCAGCCTCGAGGTCAAGCCAGTTG GGGGAGGAGGAGAGGTCGGAGAAGCGGTACTTGCTTTGGACTATCCCCTTTTTGCGCGTCAAGTTCACCGACGAC GACGCCAACAGAGCAACGGTTCACCGCGATGAGGCCTTCATCAAGAGATTTGGCTGGCTCACAGGGCGATATCGA CGCACCAAGTGGTGGTTCTTCTCCGTCTACGTCGTCTACCTCTTCGTCAGGGCCAGCTTCGTCGGCGGAGGCTCC CGCAGTCCGCTGGCGCAGGTGTTTGGCCTCTTCATCTTTGAGCTCCTCGCCCTACTGGCCATTGTCAAGACGAGC CCGTTTGAGGGGAACCGGAACACGGCTCTGTCCATCTGGATGCTATCCATCTCCAAGATTGTCACTTGCGGGTTG TCCATCGCCTTTCTGCCCGACTTTAGCCTCAACCGCATCGTAGCCACGGTGCTGGGCATCATCATTATCGTCGTC CAGGGCTTCGTCGCCGTCGCCGTCGTCGTCCTCATCGGCCTGGGCGCCGTCTCAACCTGTATGTCCCTGTCGCGC AACCGGGAGCAGTTCCCCGCGTCCATGGACCAGACGCGTATCCGTTACTTCGTCCACGTGGATGCCCGCGCGCCC GATTCTCCCCCAAGGCCAAGGACGAAGATGCCGGCAAGCGGGGTGACGGTACAGGCCACGACCTTTGACGTCAAG GGCGTCCGACGTACACCCAAGACGGACGACGTCGAGGGCGCCCCCAGCGCGTCCGCCAGCCTCCGTCGCAGCCGG GCCAACAGCGCCGGAAGCCTACCGCGAACGGGCCGCTCGCACCGCAAATCATGGAGCTCCAAGGACTTGGCTCAG TGGGACGCCGAGATGAATAGGGGCGACATCCAGCGTTCCAACTTTTCCACCCGCTCCGGCTCCTCGCTTCGCCTC CACGGACTGGGCGCTGGCGAGACCCATGCCGCCAGCGGTTCGCCAGCTAGGAGGCCGCCTCCCATGACGCCCATG CTGGAGTCGGTCGAGAGCCCTGGTTGGGGCAACCTCCCCGCGCAGCCGTTTGCCGAGGAGAAGACTGCGACAAGG GGGCCCGATACCATCTCGGACGATGGGGTATCGGCCGTTGCTCGTCCGGTGGTAGATGAGAAGGAGGGAAGCCCT CATGTTTCGGCGGCAGAACCCATGCCTCGTTCTCCTGAGAACACGACGTCTGGTGATGGGAATGCCGTCGGCGCG ATATCAACCGATGAGAAAATGACTCCAAGGGAAAATCGATAG |
| Transcript | >Ophcf2|06257 ATGGCGCCTCGCCGTGACTCCAGGCCATGGTGCCTCGTCATGGCCTTCCTCGTCACGACATTCTTCGCCTGCCCC GCCTTTGTCTTGGCCGCTAATGACAGGGTTTACATCAAGGGCGATGGCATCGACGGTGTCTCACGACAACTCGAC GTCGCCCGTTACCCAGCTCTCTACACGGGTGACTTTGACGACTGCCTTGGTGACGAGAGTCTCTTCAACATCACC AAGTTCGACGCTGCCTATTATGCCGATAACCTCACAGTCCTCTTCCACCTCGACGGCACGTCCAATATCCGGCGT GAGAACCTTATACTGCACATCTCCGTTGAGGCCTATGGAGAGAACCGCTTCAACATGACGTACGACCCGTGCAAG GCCAACATCGCCAGCATGTGTCCTCTCAACGCCAGCGTCCCGGTATCGGCCTTTGCCACAATTCCCATCTCCCCC AACGACGTCGCCGGTATTCCCTCCATCGCCCTGGGCATCCCCGACCTCGAGGGTTTCGCCCGTCTGCAGATCTTT GCCAACTCGACCAAAACCGAGATTGGCTGCTTCCAGGCCGTCATGACCAACGGAAACTCCTTCTCTCAGCCCAGG GCCGTCGCCTCTATCCTCGGCATCTTGACCGCCTTGGCCGCCTTGGCATCCTTTGCTACGGCAGCCTACGGGCTC AGCGTCCCTCATATGCGCACGCACTACGCCCACTCGTTTTCCGTCCTCATCATCTTCGAGACCTTTCAGTCCATC TTCTTCTCGGGCGCCCTCTCCGTCAACTGGCCGAGCGTGCTGCCCGCCTGGTGGAGCAACTTTGCCTGGTCCGCT GGTATCTTTGCGGACCGTTCCGTTCACAAGTCGCTGAGAGCCTTCACCGGTACCAACACCGATGCCACCCACGTC GGCGGCGCGGGCTCCTTTCAGATCAACAACAGCGGCGGCCTGCTGCGCAAAATCTACGGCAGAGCCCTGTCCGGC GGCTCGCCCAAAGTCTACAAAGCGTTGACTCGCCGGGCTGCGTACAACGCGAGCAACCCCTATGACTACAACTGG AACGGCTATCCTCGCGCCCCGGGAATGCCCATGCCCGGCACCTGGCCCGGCTTTGCTGGGACGCTGTCTGCCGTC GGCGTGCCCCCGGCCGAGGTCTTTATGGTGGCCCTGATCTGGCTGCTCGTCGTCTTGGTCGCCATCGTCGCCTTC GTTGTGGCCGCCAAGCTGATACTCGACCTGTTGAGGAGACGCAAGTACGTCAAGTCAGACGGCTTCGACTACTTT CGCTCCCATCTGGGCGGCTACGTGCTTGCGGCGCTCTTCCGCACTCTCTTCATCGCCTTCTTCGCCATCATGACC CTGGCCACGTACCAGTTCTCGCTACGCGGTCGGGCTGGGCCAACCGCCATGGCTGCCGTCGTCTGGATCGTCTTT CTGCTGGCTGTCGGCGGAGCATCGGCGCTTGCTTGCCATGCCAGATTCAGCCAGGGGAAATTCTCAGTCGTCCGG GATACGGTGCGCATCGAGCGCGGAACTCTCTTCGGCAAGATGCCATTCATAGCAGCCTCGAGGTCAAGCCAGTTG GGGGAGGAGGAGAGGTCGGAGAAGCGGTACTTGCTTTGGACTATCCCCTTTTTGCGCGTCAAGTTCACCGACGAC GACGCCAACAGAGCAACGGTTCACCGCGATGAGGCCTTCATCAAGAGATTTGGCTGGCTCACAGGGCGATATCGA CGCACCAAGTGGTGGTTCTTCTCCGTCTACGTCGTCTACCTCTTCGTCAGGGCCAGCTTCGTCGGCGGAGGCTCC CGCAGTCCGCTGGCGCAGGTGTTTGGCCTCTTCATCTTTGAGCTCCTCGCCCTACTGGCCATTGTCAAGACGAGC CCGTTTGAGGGGAACCGGAACACGGCTCTGTCCATCTGGATGCTATCCATCTCCAAGATTGTCACTTGCGGGTTG TCCATCGCCTTTCTGCCCGACTTTAGCCTCAACCGCATCGTAGCCACGGTGCTGGGCATCATCATTATCGTCGTC CAGGGCTTCGTCGCCGTCGCCGTCGTCGTCCTCATCGGCCTGGGCGCCGTCTCAACCTGTATGTCCCTGTCGCGC AACCGGGAGCAGTTCCCCGCGTCCATGGACCAGACGCGTATCCGTTACTTCGTCCACGTGGATGCCCGCGCGCCC GATTCTCCCCCAAGGCCAAGGACGAAGATGCCGGCAAGCGGGGTGACGGTACAGGCCACGACCTTTGACGTCAAG GGCGTCCGACGTACACCCAAGACGGACGACGTCGAGGGCGCCCCCAGCGCGTCCGCCAGCCTCCGTCGCAGCCGG GCCAACAGCGCCGGAAGCCTACCGCGAACGGGCCGCTCGCACCGCAAATCATGGAGCTCCAAGGACTTGGCTCAG TGGGACGCCGAGATGAATAGGGGCGACATCCAGCGTTCCAACTTTTCCACCCGCTCCGGCTCCTCGCTTCGCCTC CACGGACTGGGCGCTGGCGAGACCCATGCCGCCAGCGGTTCGCCAGCTAGGAGGCCGCCTCCCATGACGCCCATG CTGGAGTCGGTCGAGAGCCCTGGTTGGGGCAACCTCCCCGCGCAGCCGTTTGCCGAGGAGAAGACTGCGACAAGG GGGCCCGATACCATCTCGGACGATGGGGTATCGGCCGTTGCTCGTCCGGTGGTAGATGAGAAGGAGGGAAGCCCT CATGTTTCGGCGGCAGAACCCATGCCTCGTTCTCCTGAGAACACGACGTCTGGTGATGGGAATGCCGTCGGCGCG ATATCAACCGATGAGAAAATGACTCCAAGGGAAAATCGATAG |
| Gene | >Ophcf2|06257 ATGGCGCCTCGCCGTGACTCCAGGCCATGGTGCCTCGTCATGGCCTTCCTCGTCACGACATTCTTCGCCTGCCCC GCCTTTGTCTTGGCCGCTAATGACAGGGTTTACATCAAGGGCGATGGCATCGACGGTGTCTCACGACAACTCGAC GTCGCCCGTTACCCAGCTCTCTACACGGGTGACTTTGACGACTGCCTTGGTGACGAGAGTCTCTTCAACATCACC AAGTTCGACGCTGCCTATTATGCCGATAACCTCACAGTCCTCTTCCACCTCGACGGCACGTCCAATATCCGGCGT GAGAACCTTATACGTGCGTTGGTCCCCTTGACAGTAGCCTCCTATCTCTGACCTCTTCTCTCTGATAGTGCACAT CTCCGTTGAGGCCTATGGAGAGAACCGCTTCAACATGACGTACGACCCGTGCAAGGCCAACATCGCCAGCATGTG TCCTCTCAACGCCAGCGTCCCGGTATCGGCCTTTGCCACAATTCCCATCTCCCCCAACGACGTCGCCGGTATTCC CTCCATCGCCCTGGGCATCCCCGACCTCGAGGGTTTCGCCCGTCTGCAGATCTTTGCCAACTCGACCAAAACCGA GATTGGCTGCTTCCAGGCCGTCATGACCAACGGAAACTCCTTCTCTCAGCCCAGGGCCGTCGCCTCTATCCTCGG CATCTTGACCGCCTTGGCCGCCTTGGCATCCTTTGCTACGGCAGCCTACGGGCTCAGCGTCCCTCATATGCGCAC GCACTACGCCCACTCGTTTTCCGTCCTCATCATCTTCGAGACCTTTCAGTCCATCTTCTTCTCGGGCGCCCTCTC CGTCAACTGGCCGAGCGTGCTGCCCGCCTGGTGGAGCAACTTTGCCTGGTCCGCTGGTATCTTTGCGGACCGTTC CGTTCACAAGTCGCTGAGAGCCTTCACCGGTACCAACACCGATGCCACCCACGTCGGCGGCGCGGGCTCCTTTCA GATCAACAACAGCGGCGGCCTGCTGCGCAAAATCTACGGCAGAGCCCTGTCCGGCGGCTCGCCCAAAGTCTACAA AGCGTTGACTCGCCGGGCTGCGTACAACGCGAGCAACCCCTATGACTACAACTGGAACGGCTATCCTCGCGCCCC GGGAATGCCCATGCCCGGCACCTGGCCCGGCTTTGCTGGGACGCTGTCTGCCGTCGGCGTGCCCCCGGCCGAGGT CTTTATGGTGGCCCTGATCTGGCTGCTCGTCGTCTTGGTCGCCATCGTCGCCTTCGTTGTGGCCGCCAAGCTGAT ACTCGACCTGTTGAGGAGACGCAAGTACGTCAAGTCAGACGGCTTCGACTACTTTCGCTCCCATCTGGGCGGCTA CGTGCTTGCGGCGCTCTTCCGCACTCTCTTCATCGCCTTCTTCGCCATCATGACCCTGGCCACGTACCAGTTCTC GCTACGCGGTCGGGCTGGGCCAACCGCCATGGCTGCCGTCGTCTGGATCGTCTTTCTGCTGGCTGTCGGCGGAGC ATCGGCGCTTGCTTGCCATGCCAGATTCAGCCAGGGGAAATTCTCAGTCGTCCGGGATACGGTGCGCATCGAGCG CGGAACTCTCTTCGGCAAGATGCCATTCATAGCAGCCTCGAGGTCAAGCCAGTTGGGGGAGGAGGAGAGGTCGGA GAAGCGGTACTTGCTTTGGACTATCCCCTTTTTGCGCGTCAAGTTCACCGACGACGACGCCAACAGAGCAACGGT TCACCGCGATGAGGCCTTCATCAAGAGATTTGGCTGGCTCACAGGGCGATATCGACGCACCAAGTGGTGGTTCTT CTCCGTCTACGTCGTCTACCTCTTCGTCAGGGCCAGCTTCGTCGGCGGAGGCTCCCGCAGTCCGCTGGCGCAGGT GTTTGGCCTCTTCATCTTTGAGCTCCTCGCCCTACTGGCCATTGTCAAGACGAGCCCGTTTGAGGGGAACCGGAA CACGGCTCTGTCCATCTGGATGCTATCCATCTCCAAGATTGTCACTTGCGGGTTGTCCATCGCCTTTCTGCCCGA CTTTAGCCTCAACCGCATCGTAGCCACGGTGCTGGGCATCATCATTATCGTCGTCCAGGGCTTCGTCGCCGTCGC CGTCGTCGTCCTCATCGGCCTGGGCGCCGTCTCAACCTGTATGTCCCTGTCGCGCAACCGGGAGCAGTTCCCCGC GTCCATGGACCAGACGCGTATCCGTTACTTCGTCCACGTGGATGCCCGCGCGCCCGATTCTCCCCCAAGGCCAAG GACGAAGATGCCGGCAAGCGGGGTGACGGTACAGGCCACGACCTTTGACGTCAAGGGCGTCCGACGTACACCCAA GACGGACGACGTCGAGGGCGCCCCCAGCGCGTCCGCCAGCCTCCGTCGCAGCCGGGCCAACAGCGCCGGAAGCCT ACCGCGAACGGGCCGCTCGCACCGCAAATCATGGAGCTCCAAGGACTTGGCTCAGTGGGACGCCGAGATGAATAG GGGCGACATCCAGCGTTCCAACTTTTCCACCCGCTCCGGCTCCTCGCTTCGCCTCCACGGACTGGGCGCTGGCGA GACCCATGCCGCCAGCGGTTCGCCAGCTAGGAGGCCGCCTCCCATGACGCCCATGCTGGAGTCGGTCGAGAGCCC TGGTTGGGGCAACCTCCCCGCGCAGCCGTTTGCCGAGGAGAAGACTGCGACAAGGGGGCCCGATACCATCTCGGA CGATGGGGTATCGGCCGTTGCTCGTCCGGTGGTAGATGAGAAGGAGGGAAGCCCTCATGTTTCGGCGGCAGAACC CATGCCTCGTTCTCCTGAGAACACGACGTCTGGTGATGGGAATGCCGTCGGCGCGATATCAACCGATGAGAAAAT GACTCCAAGGGAAAATCGATAG |