© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|06256 |
| Gene name | |
| Location | scaffold_07:1702751..1704455 |
| Strand | + |
| Gene length (bp) | 1704 |
| Transcript length (bp) | 1488 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 1.9E-20 | 248 | 321 |
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 2.0E-18 | 412 | 484 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 31 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 276 | 298 | 22 |
| 2 | 308 | 325 | 17 |
| 3 | 397 | 419 | 22 |
| 4 | 439 | 461 | 22 |
| 5 | 468 | 490 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 55.49 | 31.60 | 79.38 |
| Alive | In ants, during behavior modification | 69.46 | 38.74 | 100.19 |
| Dead | In ants, recently dead | 45.89 | 25.52 | 66.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.252020 | no |
| Alive | Dead | 0.010814 | yes |
| Dead | Fungus | 0.354164 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|06256 MRAHTQPTQPTLSPPLLLLLLLPLLVSSLAGSLKPEPATVSHARVEPRHYVPTKEAPVDGRDGKPHTGPFVEKTD SDRTGLPPLRGRPEDPTVVDGIKIPKSNDGVMFDRNRERPLEGTTGTEGGVSEKDKARKEKEGQTGERTVGQPKS PKEQPRLPDSEEKKLQTNGDDRYRPAVEDSSSSGYTGLGKPADIPDIPREDAMPPPKSKTSEAEVPLTGSPRKTS HKSSDLHADDEDGIIRPFHSFVLSLTMILVSEVGDKTFLVAALMAMKHDRLLVFSAAFGALLVMTVLSALLGHAV PTLIPKRLTSLLAAILFFVFGLKLLREGLNMDPDEGVAAEMQEVEQELADKEKEQHGHPYRQHSLSPHALEMGLA PRNPPRLPGQSSGRSIDDFVHGVGNLCSLLLSPAWVQTFAMTFLGEWGDRSQIATIAMAAGQDYAWVTLGAMCGH AVCTGVAVVGGRAIAGRVSLKVVTVGGALAFLLFSIVYLIEALHG* |
| Coding | >Ophcf2|06256 ATGCGCGCTCACACGCAGCCGACGCAGCCGACGCTCTCGCCGCCGCTGCTGCTGCTGCTGCTGCTACCGCTCCTG GTCTCCTCGCTGGCTGGAAGTCTGAAACCCGAGCCGGCTACTGTCAGCCACGCCCGCGTCGAGCCTCGTCATTAC GTACCGACAAAGGAGGCTCCCGTCGATGGCAGAGACGGGAAGCCACATACAGGCCCCTTTGTCGAAAAGACGGAT TCGGACAGGACAGGCTTGCCCCCTCTCCGGGGCCGACCCGAGGATCCCACTGTCGTGGACGGCATCAAAATTCCA AAGTCAAATGACGGCGTCATGTTTGATAGGAACCGCGAGCGTCCCCTAGAGGGCACCACCGGCACCGAGGGCGGC GTCTCCGAAAAGGACAAGGCTCGCAAGGAAAAGGAGGGCCAGACCGGGGAGCGCACCGTCGGACAGCCCAAGTCA CCCAAGGAGCAGCCCCGGCTACCAGACAGCGAGGAGAAGAAGCTGCAAACGAATGGCGACGACAGGTACAGGCCT GCAGTGGAGGACAGCTCATCAAGCGGCTACACGGGGCTGGGGAAACCCGCAGACATACCCGACATCCCCCGCGAA GACGCAATGCCTCCACCCAAGTCCAAGACCAGCGAAGCAGAAGTGCCCCTAACAGGTTCGCCACGCAAGACGAGC CACAAAAGCAGCGACCTACACGCCGACGACGAAGACGGCATCATCCGACCCTTCCACTCCTTCGTCCTCTCCCTG ACCATGATCCTGGTATCCGAGGTAGGCGACAAGACATTCCTGGTAGCAGCTCTCATGGCGATGAAGCACGATCGC CTCCTCGTCTTCTCCGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTCCTATCAGCGCTACTCGGGCACGCCGTC CCGACGCTGATACCTAAGCGGCTCACCAGCCTCCTCGCCGCCATCCTCTTCTTCGTCTTCGGCCTCAAGCTCCTC CGCGAAGGTCTGAACATGGATCCCGACGAGGGCGTCGCCGCCGAGATGCAAGAAGTAGAACAAGAGCTCGCCGAC AAGGAAAAAGAACAACACGGCCATCCCTACCGTCAACATTCCCTCTCACCACACGCCCTAGAAATGGGCCTCGCC CCCCGAAACCCCCCGCGGCTCCCAGGCCAAAGCAGCGGCCGCTCGATAGACGACTTCGTCCACGGCGTCGGAAAC CTTTGCTCCCTCCTCCTCAGCCCAGCCTGGGTGCAGACCTTTGCCATGACCTTCCTGGGCGAGTGGGGTGACCGC AGTCAGATCGCGACGATTGCAATGGCGGCTGGCCAGGATTACGCCTGGGTTACGCTGGGGGCTATGTGCGGTCAT GCTGTTTGCACCGGCGTTGCCGTCGTGGGCGGGAGGGCTATAGCCGGACGCGTCAGCCTTAAAGTCGTTACCGTC GGCGGTGCCCTCGCCTTCCTCCTCTTCTCCATCGTCTACCTCATCGAAGCTCTTCACGGCTAG |
| Transcript | >Ophcf2|06256 ATGCGCGCTCACACGCAGCCGACGCAGCCGACGCTCTCGCCGCCGCTGCTGCTGCTGCTGCTGCTACCGCTCCTG GTCTCCTCGCTGGCTGGAAGTCTGAAACCCGAGCCGGCTACTGTCAGCCACGCCCGCGTCGAGCCTCGTCATTAC GTACCGACAAAGGAGGCTCCCGTCGATGGCAGAGACGGGAAGCCACATACAGGCCCCTTTGTCGAAAAGACGGAT TCGGACAGGACAGGCTTGCCCCCTCTCCGGGGCCGACCCGAGGATCCCACTGTCGTGGACGGCATCAAAATTCCA AAGTCAAATGACGGCGTCATGTTTGATAGGAACCGCGAGCGTCCCCTAGAGGGCACCACCGGCACCGAGGGCGGC GTCTCCGAAAAGGACAAGGCTCGCAAGGAAAAGGAGGGCCAGACCGGGGAGCGCACCGTCGGACAGCCCAAGTCA CCCAAGGAGCAGCCCCGGCTACCAGACAGCGAGGAGAAGAAGCTGCAAACGAATGGCGACGACAGGTACAGGCCT GCAGTGGAGGACAGCTCATCAAGCGGCTACACGGGGCTGGGGAAACCCGCAGACATACCCGACATCCCCCGCGAA GACGCAATGCCTCCACCCAAGTCCAAGACCAGCGAAGCAGAAGTGCCCCTAACAGGTTCGCCACGCAAGACGAGC CACAAAAGCAGCGACCTACACGCCGACGACGAAGACGGCATCATCCGACCCTTCCACTCCTTCGTCCTCTCCCTG ACCATGATCCTGGTATCCGAGGTAGGCGACAAGACATTCCTGGTAGCAGCTCTCATGGCGATGAAGCACGATCGC CTCCTCGTCTTCTCCGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTCCTATCAGCGCTACTCGGGCACGCCGTC CCGACGCTGATACCTAAGCGGCTCACCAGCCTCCTCGCCGCCATCCTCTTCTTCGTCTTCGGCCTCAAGCTCCTC CGCGAAGGTCTGAACATGGATCCCGACGAGGGCGTCGCCGCCGAGATGCAAGAAGTAGAACAAGAGCTCGCCGAC AAGGAAAAAGAACAACACGGCCATCCCTACCGTCAACATTCCCTCTCACCACACGCCCTAGAAATGGGCCTCGCC CCCCGAAACCCCCCGCGGCTCCCAGGCCAAAGCAGCGGCCGCTCGATAGACGACTTCGTCCACGGCGTCGGAAAC CTTTGCTCCCTCCTCCTCAGCCCAGCCTGGGTGCAGACCTTTGCCATGACCTTCCTGGGCGAGTGGGGTGACCGC AGTCAGATCGCGACGATTGCAATGGCGGCTGGCCAGGATTACGCCTGGGTTACGCTGGGGGCTATGTGCGGTCAT GCTGTTTGCACCGGCGTTGCCGTCGTGGGCGGGAGGGCTATAGCCGGACGCGTCAGCCTTAAAGTCGTTACCGTC GGCGGTGCCCTCGCCTTCCTCCTCTTCTCCATCGTCTACCTCATCGAAGCTCTTCACGGCTAG |
| Gene | >Ophcf2|06256 ATGCGCGCTCACACGCAGCCGACGCAGCCGACGCTCTCGCCGCCGCTGCTGCTGCTGCTGCTGCTACCGCTCCTG GTCTCCTCGCTGGCTGGAAGTCTGAAACCCGAGCCGGCTACTGTCAGCCACGCCCGCGTCGAGCCTCGTCATTAC GTACCGACAAAGGAGGCTCCCGTCGATGGCAGAGACGGGAAGCCACATACAGGCCCCTTTGTCGAAAAGACGGAT TCGGACAGGACAGGCTTGCCCCCTCTCCGGGGCCGACCCGAGGATCCCACTGTCGTGGACGGCATCAAAATTCCA AAGTCAAATGACGGCGTCATGTTTGATAGGAACCGCGAGCGTCCCCTAGAGGGCACCACCGGCACCGAGGGCGGC GTCTCCGAAAAGGACAAGGCTCGCAAGGAAAAGGAGGGCCAGACCGGGGAGCGCACCGTCGGACAGCCCAAGTCA CCCAAGGAGCAGCCCCGGCTACCAGACAGCGAGGAGAAGAAGCTGCAAACGAATGGCGACGACAGGTACAGGCCT GCAGTGGAGGACAGCTCATCAAGCGGCTACACGGGGCTGGGGGCAGGTTTTCCCCGTTCTCTTTACCCCAGATAT TGATGCGATGAATTCGTCATGACCGTCTACTGACGCGCTACAACAGAAACCCGCAGACATACCCGACATCCCCCG CGAAGACGCAATGCCTCCACCCAAGTCCAAGACCAGCGAAGCAGAAGTGCCCCTAACAGGTTCGCCACGCAAGAC GAGCCACAAAAGCAGCGACCTACACGCCGACGACGAAGACGGCATCATCCGACCCTTCCACTCCTTCGTCCTCTC CCTGACCATGATCCTGGTATCCGAGGTAGGCGACAAGACATTCCTGGTAGCAGCTCTCATGGCGATGAAGCACGA TCGCCTCCTCGTCTTCTCCGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTCCTATCAGCGCTACTCGGGCACGC CGTCCCGACGCTGATACCTAAGCGGCTCACCAGCCTCCTCGCCGCCATCCTCTTCTTCGTCTTCGGCCTCAAGCT CCTCCGCGAAGGTCTGAACATGGATCCCGACGAGGGCGTCGCCGCCGAGATGCAAGAAGTAGAACAAGAGCTCGC CGACAAGGAAAAAGAACAACACGGCCATCCCTACCGTCAACATTCCCTCTCACCACACGCCCTAGAAATGGGCCT CGCCCCCCGAAACCCCCCGCGGCTCCCGTTCAAAAGGCCGTTTCCCTCCCCCCCGATCCCCATCGCAATCCCCCT CCCGCCCGTGCTCCCCAACCAGAGGCCAAAGCAGCGGCCGCTCGATAGACGACTTCGTCCACGGCGTCGGAAACC TTTGCTCCCTCCTCCTCAGCCCAGCCTGGGTGCAGACCTTTGCCATGACCTTCCTGGGCGAGTGGGGTGACCGCA GTCAGATCGCGACGATTGCAATGGCGGCTGGCCAGGATTACGCCTGGGTTACGCTGGGGGCTATGTGCGGTCATG CTGTTTGCACCGGCGTTGCCGTCGTGGGCGGGAGGGCTATAGCCGGACGCGTCAGCCTTAAAGTCGGTGAGTCTC TCACCTCGCTCCTCCTGTCTGCCTATCCGGTATACGCTGACAGGAATATTGGTGATAGTTACCGTCGGCGGTGCC CTCGCCTTCCTCCTCTTCTCCATCGTCTACCTCATCGAAGCTCTTCACGGCTAG |